RNA–Protein interactions for RNA: ENST00000543205.1

CLIP1-217, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 2,018 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-217ENST00000543205 BTBD16Q32M84 506 aa4.91□□□□□ -1.62
CLIP1-217ENST00000543205 AMZ1Q400G9 498 aa4.91□□□□□ -1.62
CLIP1-217ENST00000543205 CHCHD2P9Q5T1J5 151 aaPredicted RBP4.91□□□□□ -1.62
CLIP1-217ENST00000543205 UBAP2Q5T6F2 1119 aaKnown RBP4.91□□□□□ -1.62
CLIP1-217ENST00000543205 GARNL3Q5VVW2 1013 aa4.91□□□□□ -1.62
CLIP1-217ENST00000543205 DUS1LQ6P1R4 473 aaKnown RBP4.91□□□□□ -1.62
CLIP1-217ENST00000543205 TTC23LQ6PF05 361 aa4.91□□□□□ -1.62
CLIP1-217ENST00000543205 TMEM26Q6ZUK4 368 aa4.91□□□□□ -1.62
CLIP1-217ENST00000543205 TAOK1Q7L7X3 1001 aa4.91□□□□□ -1.62
CLIP1-217ENST00000543205 SLCO6A1Q86UG4 719 aa4.91□□□□□ -1.62
CLIP1-217ENST00000543205 PIM3Q86V86 326 aa4.91□□□□□ -1.62
CLIP1-217ENST00000543205 ZNF761Q86XN6 746 aaPredicted RBP4.91□□□□□ -1.62
CLIP1-217ENST00000543205 LURAP1LQ8IV03 231 aa4.91□□□□□ -1.62
CLIP1-217ENST00000543205 VRK3Q8IV63 474 aa4.91□□□□□ -1.62
CLIP1-217ENST00000543205 GLB1L3Q8NCI6 653 aaPredicted RBP4.91□□□□□ -1.62
CLIP1-217ENST00000543205 OR6Y1Q8NGX8 325 aa4.91□□□□□ -1.62
CLIP1-217ENST00000543205 OR10G6Q8NH81 332 aa4.91□□□□□ -1.62
CLIP1-217ENST00000543205 CD200R1Q8TD46 325 aa4.91□□□□□ -1.62
CLIP1-217ENST00000543205 TSPAN17Q96FV3 270 aa4.91□□□□□ -1.62
CLIP1-217ENST00000543205 RBBP8Q99708 897 aa4.91□□□□□ -1.62
CLIP1-217ENST00000543205 THUMPD3Q9BV44 507 aaKnown RBP4.91□□□□□ -1.62
CLIP1-217ENST00000543205 FUT8Q9BYC5 575 aa4.91□□□□□ -1.62
CLIP1-217ENST00000543205 MUC13Q9H3R2 512 aa4.91□□□□□ -1.62
CLIP1-217ENST00000543205 LRRN3Q9H3W5 708 aa4.91□□□□□ -1.62
CLIP1-217ENST00000543205 UCK1Q9HA47 277 aa4.91□□□□□ -1.62
CLIP1-217ENST00000543205 SLC40A1Q9NP59 571 aa4.91□□□□□ -1.62
CLIP1-217ENST00000543205 MBNL3Q9NUK0 354 aaKnown RBP4.91□□□□□ -1.62
CLIP1-217ENST00000543205 ERVK13-1Q9NX77 482 aa4.91□□□□□ -1.62
CLIP1-217ENST00000543205 NIPSNAP3AQ9UFN0 247 aaPredicted RBP4.91□□□□□ -1.62
CLIP1-217ENST00000543205 RNF114Q9Y508 228 aa4.91□□□□□ -1.62
CLIP1-217ENST00000543205 FRYLO94915 3013 aa4.91□□□□□ -1.62
CLIP1-217ENST00000543205 ASCC3Q8N3C0 2202 aaKnown RBP4.91□□□□□ -1.62
CLIP1-217ENST00000543205 PRAMEF33A0A0G2JMD5 474 aa4.9□□□□□ -1.62
CLIP1-217ENST00000543205 EXOC1LA0A1B0GW35 172 aa4.9□□□□□ -1.62
CLIP1-217ENST00000543205 PCDH17O14917 1159 aa4.9□□□□□ -1.62
CLIP1-217ENST00000543205 DUX1O43812 170 aa4.9□□□□□ -1.62
CLIP1-217ENST00000543205 C1QAP02745 245 aa4.9□□□□□ -1.62
CLIP1-217ENST00000543205 RNASE1P07998 156 aaKnown RBP4.9□□□□□ -1.62
CLIP1-217ENST00000543205 ADRB1P08588 477 aa4.9□□□□□ -1.62
CLIP1-217ENST00000543205 MPC1LP0DKB6 136 aa4.9□□□□□ -1.62
CLIP1-217ENST00000543205 ENO3P13929 434 aaPredicted RBP4.9□□□□□ -1.62
CLIP1-217ENST00000543205 NPPBP16860 134 aa4.9□□□□□ -1.62
CLIP1-217ENST00000543205 AMD1P17707 334 aa4.9□□□□□ -1.62
CLIP1-217ENST00000543205 FPR2P25090 351 aa4.9□□□□□ -1.62
CLIP1-217ENST00000543205 ACADLP28330 430 aa4.9□□□□□ -1.62
CLIP1-217ENST00000543205 LIMK2P53671 638 aa4.9□□□□□ -1.62
CLIP1-217ENST00000543205 SLC13A2Q13183 592 aa4.9□□□□□ -1.62
CLIP1-217ENST00000543205 GPR18Q14330 331 aa4.9□□□□□ -1.62
CLIP1-217ENST00000543205 SLC29A2Q14542 456 aa4.9□□□□□ -1.62
CLIP1-217ENST00000543205 IRF3Q14653 427 aa4.9□□□□□ -1.62
CLIP1-217ENST00000543205 USP10Q14694 798 aaKnown RBP4.9□□□□□ -1.62
CLIP1-217ENST00000543205 NR1D2Q14995 579 aa4.9□□□□□ -1.62
CLIP1-217ENST00000543205 MED22Q15528 200 aa4.9□□□□□ -1.62
CLIP1-217ENST00000543205 ACSBG2Q5FVE4 666 aa4.9□□□□□ -1.62
CLIP1-217ENST00000543205 KRBOX4Q5JUW0 171 aa4.9□□□□□ -1.62
CLIP1-217ENST00000543205 LGSNQ5TDP6 509 aa4.9□□□□□ -1.62
CLIP1-217ENST00000543205 NKAIN2Q5VXU1 208 aa4.9□□□□□ -1.62
CLIP1-217ENST00000543205 LRRC8EQ6NSJ5 796 aa4.9□□□□□ -1.62
CLIP1-217ENST00000543205 ARMC6Q6NXE6 501 aa4.9□□□□□ -1.62
CLIP1-217ENST00000543205 EMBQ6PCB8 327 aa4.9□□□□□ -1.62
CLIP1-217ENST00000543205 KLHL35Q6PF15 583 aa4.9□□□□□ -1.62
CLIP1-217ENST00000543205 PAQR3Q6TCH7 311 aa4.9□□□□□ -1.62
CLIP1-217ENST00000543205 DHRS13Q6UX07 377 aa4.9□□□□□ -1.62
CLIP1-217ENST00000543205 CYP2R1Q6VVX0 501 aa4.9□□□□□ -1.62
CLIP1-217ENST00000543205 SPRED1Q7Z699 444 aa4.9□□□□□ -1.62
CLIP1-217ENST00000543205 CPNE9Q8IYJ1 553 aa4.9□□□□□ -1.62
CLIP1-217ENST00000543205 ACVR1CQ8NER5 493 aa4.9□□□□□ -1.62
CLIP1-217ENST00000543205 OR5AR1Q8NGP9 310 aa4.9□□□□□ -1.62
CLIP1-217ENST00000543205 OR5K2Q8NHB8 316 aa4.9□□□□□ -1.62
CLIP1-217ENST00000543205 WDR48Q8TAF3 677 aa4.9□□□□□ -1.62
CLIP1-217ENST00000543205 MAGEC3Q8TD91 643 aa4.9□□□□□ -1.62
CLIP1-217ENST00000543205 ZFAND2BQ8WV99 257 aa4.9□□□□□ -1.62
CLIP1-217ENST00000543205 LINGO1Q96FE5 620 aa4.9□□□□□ -1.62
CLIP1-217ENST00000543205 MAP6Q96JE9 813 aa4.9□□□□□ -1.62
CLIP1-217ENST00000543205 MRGPRX4Q96LA9 322 aa4.9□□□□□ -1.62
CLIP1-217ENST00000543205 PTCHD1Q96NR3 888 aa4.9□□□□□ -1.62
CLIP1-217ENST00000543205 GFM1Q96RP9 751 aaKnown RBP4.9□□□□□ -1.62
CLIP1-217ENST00000543205 PAFAH2Q99487 392 aa4.9□□□□□ -1.62
CLIP1-217ENST00000543205 GPR22Q99680 433 aa4.9□□□□□ -1.62
CLIP1-217ENST00000543205 OLFM1Q99784 485 aa4.9□□□□□ -1.62
CLIP1-217ENST00000543205 CHST8Q9H2A9 424 aa4.9□□□□□ -1.62
CLIP1-217ENST00000543205 EPB41L1Q9H4G0 881 aa4.9□□□□□ -1.62
CLIP1-217ENST00000543205 KIR3DX1Q9H7L2 352 aa4.9□□□□□ -1.62
CLIP1-217ENST00000543205 CAB39LQ9H9S4 337 aa4.9□□□□□ -1.62
CLIP1-217ENST00000543205 SYTL2Q9HCH5 934 aa4.9□□□□□ -1.62
CLIP1-217ENST00000543205 PCDHB16Q9NRJ7 776 aa4.9□□□□□ -1.62
CLIP1-217ENST00000543205 SLC24A2Q9UI40 661 aa4.9□□□□□ -1.62
CLIP1-217ENST00000543205 KCND3Q9UK17 655 aa4.9□□□□□ -1.62
CLIP1-217ENST00000543205 CDYLQ9Y232 598 aa4.9□□□□□ -1.62
CLIP1-217ENST00000543205 TDRKHQ9Y2W6 561 aaKnown RBP4.9□□□□□ -1.62
CLIP1-217ENST00000543205 MED16Q9Y2X0 877 aa4.9□□□□□ -1.62
CLIP1-217ENST00000543205 COL5A1P20908 1838 aaPredicted RBP4.9□□□□□ -1.62
CLIP1-217ENST00000543205 IGHV1OR21-1A0A087WYE8 117 aa4.9□□□□□ -1.63
CLIP1-217ENST00000543205 LILRA5A6NI73 299 aa4.9□□□□□ -1.63
CLIP1-217ENST00000543205 B4GAT1O43505 415 aa4.9□□□□□ -1.63
CLIP1-217ENST00000543205 ERLIN1O75477 346 aa4.9□□□□□ -1.63
CLIP1-217ENST00000543205 MATN4O95460 622 aa4.9□□□□□ -1.63
CLIP1-217ENST00000543205 PROS1P07225 676 aa4.9□□□□□ -1.63
CLIP1-217ENST00000543205 HSD17B3P37058 310 aa4.9□□□□□ -1.63
CLIP1-217ENST00000543205 BDKRB1P46663 353 aa4.9□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms