RNA–Protein interactions for RNA: ENST00000543140.5

COL4A1-204, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A1, Length 2,547 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-204ENST00000543140 PCBD2Q9H0N5 130 aa15.58■□□□□ 0.08
COL4A1-204ENST00000543140 SLAMF7Q9NQ25 335 aa15.58■□□□□ 0.08
COL4A1-204ENST00000543140 LHX9Q9NQ69 397 aa15.58■□□□□ 0.08
COL4A1-204ENST00000543140 C1GALT1Q9NS00 363 aa15.58■□□□□ 0.08
COL4A1-204ENST00000543140 THUMPD1Q9NXG2 353 aaKnown RBP15.58■□□□□ 0.08
COL4A1-204ENST00000543140 GMEB1Q9Y692 573 aa15.58■□□□□ 0.08
COL4A1-204ENST00000543140 IGKV1-8A0A0C4DH67 115 aa15.57■□□□□ 0.08
COL4A1-204ENST00000543140 GPR89AB7ZAQ6 455 aa15.57■□□□□ 0.08
COL4A1-204ENST00000543140 M0QX08 132 aa15.57■□□□□ 0.08
COL4A1-204ENST00000543140 PLRG1O43660 514 aaKnown RBP15.57■□□□□ 0.08
COL4A1-204ENST00000543140 GPR89BP0CG08 455 aa15.57■□□□□ 0.08
COL4A1-204ENST00000543140 EPHA2P29317 976 aa15.57■□□□□ 0.08
COL4A1-204ENST00000543140 PLA2G16P53816 162 aa15.57■□□□□ 0.08
COL4A1-204ENST00000543140 SELENOWP63302 87 aa15.57■□□□□ 0.08
COL4A1-204ENST00000543140 CSNK1G2P78368 415 aa15.57■□□□□ 0.08
COL4A1-204ENST00000543140 IL5RAQ01344 420 aa15.57■□□□□ 0.08
COL4A1-204ENST00000543140 ZNF691Q5VV52 312 aa15.57■□□□□ 0.08
COL4A1-204ENST00000543140 SDE2Q6IQ49 451 aa15.57■□□□□ 0.08
COL4A1-204ENST00000543140 IKBIPQ70UQ0 350 aa15.57■□□□□ 0.08
COL4A1-204ENST00000543140 ATG16L2Q8NAA4 619 aa15.57■□□□□ 0.08
COL4A1-204ENST00000543140 HDAC2Q92769 488 aaKnown RBP15.57■□□□□ 0.08
COL4A1-204ENST00000543140 UCN3Q969E3 161 aa15.57■□□□□ 0.08
COL4A1-204ENST00000543140 MTERF3Q96E29 417 aa15.57■□□□□ 0.08
COL4A1-204ENST00000543140 S1PR5Q9H228 398 aa15.57■□□□□ 0.08
COL4A1-204ENST00000543140 CXorf36Q9H7Y0 433 aa15.57■□□□□ 0.08
COL4A1-204ENST00000543140 FANCEQ9HB96 536 aa15.57■□□□□ 0.08
COL4A1-204ENST00000543140 SPATA7Q9P0W8 599 aa15.57■□□□□ 0.08
COL4A1-204ENST00000543140 KIF17Q9P2E2 1029 aa15.57■□□□□ 0.08
COL4A1-204ENST00000543140 PNMA8BQ9ULN7 279 aaPredicted RBP15.57■□□□□ 0.08
COL4A1-204ENST00000543140 PTGES3LE9PB15 166 aa15.57■□□□□ 0.08
COL4A1-204ENST00000543140 KLF8O95600 359 aaPredicted RBP15.57■□□□□ 0.08
COL4A1-204ENST00000543140 EGFP01133 1207 aa15.57■□□□□ 0.08
COL4A1-204ENST00000543140 ITGA1P56199 1179 aa15.57■□□□□ 0.08
COL4A1-204ENST00000543140 PPP2CBP62714 309 aa15.57■□□□□ 0.08
COL4A1-204ENST00000543140 PPP2CAP67775 309 aa15.57■□□□□ 0.08
COL4A1-204ENST00000543140 FOXD4Q12950 439 aaPredicted RBP15.57■□□□□ 0.08
COL4A1-204ENST00000543140 RFX4Q33E94 735 aa15.57■□□□□ 0.08
COL4A1-204ENST00000543140 KDM4DQ6B0I6 523 aa15.57■□□□□ 0.08
COL4A1-204ENST00000543140 TRIM40Q6P9F5 258 aa15.57■□□□□ 0.08
COL4A1-204ENST00000543140 TAMM41Q96BW9 452 aa15.57■□□□□ 0.08
COL4A1-204ENST00000543140 APOOQ9BUR5 198 aa15.57■□□□□ 0.08
COL4A1-204ENST00000543140 CD93Q9NPY3 652 aa15.57■□□□□ 0.08
COL4A1-204ENST00000543140 CA5BQ9Y2D0 317 aa15.57■□□□□ 0.08
COL4A1-204ENST00000543140 ZNF451Q9Y4E5 1061 aa15.57■□□□□ 0.08
COL4A1-204ENST00000543140 TESMINQ9Y4I5 508 aa15.57■□□□□ 0.08
COL4A1-204ENST00000543140 SLC16A6O15403 523 aa15.56■□□□□ 0.08
COL4A1-204ENST00000543140 CAPN5O15484 640 aaPredicted RBP15.56■□□□□ 0.08
COL4A1-204ENST00000543140 TMPRSS11DO60235 418 aa15.56■□□□□ 0.08
COL4A1-204ENST00000543140 HOXB3P14651 431 aaPredicted RBP15.56■□□□□ 0.08
COL4A1-204ENST00000543140 HOXB2P14652 356 aa15.56■□□□□ 0.08
COL4A1-204ENST00000543140 DDCP20711 480 aa15.56■□□□□ 0.08
COL4A1-204ENST00000543140 RRM2P31350 389 aa15.56■□□□□ 0.08
COL4A1-204ENST00000543140 RAB28P51157 221 aa15.56■□□□□ 0.08
COL4A1-204ENST00000543140 MAPK10P53779 464 aa15.56■□□□□ 0.08
COL4A1-204ENST00000543140 CLDN2P57739 230 aa15.56■□□□□ 0.08
COL4A1-204ENST00000543140 CDK6Q00534 326 aa15.56■□□□□ 0.08
COL4A1-204ENST00000543140 DMPKQ09013 629 aa15.56■□□□□ 0.08
COL4A1-204ENST00000543140 RBM48Q5RL73 367 aaKnown RBP15.56■□□□□ 0.08
COL4A1-204ENST00000543140 BROXQ5VW32 411 aa15.56■□□□□ 0.08
COL4A1-204ENST00000543140 PIWIL3Q7Z3Z3 882 aaKnown RBP15.56■□□□□ 0.08
COL4A1-204ENST00000543140 TSEN54Q7Z6J9 526 aaKnown RBP15.56■□□□□ 0.08
COL4A1-204ENST00000543140 RAB42Q8N4Z0 105 aa15.56■□□□□ 0.08
COL4A1-204ENST00000543140 BPIFB6Q8NFQ5 453 aa15.56■□□□□ 0.08
COL4A1-204ENST00000543140 OR2A1Q8NGT9 310 aa15.56■□□□□ 0.08
COL4A1-204ENST00000543140 EXOSC8Q96B26 276 aaKnown RBP15.56■□□□□ 0.08
COL4A1-204ENST00000543140 TBC1D20Q96BZ9 403 aa15.56■□□□□ 0.08
COL4A1-204ENST00000543140 NAA50Q9GZZ1 169 aaKnown RBP15.56■□□□□ 0.08
COL4A1-204ENST00000543140 GABARAPL1Q9H0R8 117 aa15.56■□□□□ 0.08
COL4A1-204ENST00000543140 SLC17A4Q9Y2C5 497 aa15.56■□□□□ 0.08
COL4A1-204ENST00000543140 SNX11Q9Y5W9 270 aa15.56■□□□□ 0.08
COL4A1-204ENST00000543140 A0A1W2PQF6 199 aa15.56■□□□□ 0.08
COL4A1-204ENST00000543140 POM121BA6NF01 834 aa15.56■□□□□ 0.08
COL4A1-204ENST00000543140 NDUFS4O43181 175 aa15.56■□□□□ 0.08
COL4A1-204ENST00000543140 MANFP55145 182 aaKnown RBP15.56■□□□□ 0.08
COL4A1-204ENST00000543140 PRDX1Q06830 199 aaKnown RBP15.56■□□□□ 0.08
COL4A1-204ENST00000543140 HSPB3Q12988 150 aa15.56■□□□□ 0.08
COL4A1-204ENST00000543140 UBE3DQ7Z6J8 389 aa15.56■□□□□ 0.08
COL4A1-204ENST00000543140 SMYD1Q8NB12 490 aa15.56■□□□□ 0.08
COL4A1-204ENST00000543140 OR52J3Q8NH60 311 aa15.56■□□□□ 0.08
COL4A1-204ENST00000543140 C12orf43Q96C57 262 aaKnown RBP15.56■□□□□ 0.08
COL4A1-204ENST00000543140 C17orf62Q9BQA9 187 aa15.56■□□□□ 0.08
COL4A1-204ENST00000543140 TIMM29Q9BSF4 260 aa15.56■□□□□ 0.08
COL4A1-204ENST00000543140 FGF22Q9HCT0 170 aa15.56■□□□□ 0.08
COL4A1-204ENST00000543140 KRT84Q9NSB2 600 aa15.56■□□□□ 0.08
COL4A1-204ENST00000543140 TEX10Q9NXF1 929 aaPredicted RBP15.56■□□□□ 0.08
COL4A1-204ENST00000543140 MDC1Q14676 2089 aaKnown RBP15.55■□□□□ 0.08
COL4A1-204ENST00000543140 WASHC1A8K0Z3 465 aa15.55■□□□□ 0.08
COL4A1-204ENST00000543140 TMX2-CTNND1H3BSU7 103 aa15.55■□□□□ 0.08
COL4A1-204ENST00000543140 XPNPEP2O43895 674 aa15.55■□□□□ 0.08
COL4A1-204ENST00000543140 SEMA3DO95025 777 aa15.55■□□□□ 0.08
COL4A1-204ENST00000543140 CLK3P49761 638 aaKnown RBP15.55■□□□□ 0.08
COL4A1-204ENST00000543140 ADAM15Q13444 863 aa15.55■□□□□ 0.08
COL4A1-204ENST00000543140 ZC3H12BQ5HYM0 836 aaKnown RBP15.55■□□□□ 0.08
COL4A1-204ENST00000543140 KIAA1161Q6NSJ0 714 aa15.55■□□□□ 0.08
COL4A1-204ENST00000543140 WASH2PQ6VEQ5 465 aa15.55■□□□□ 0.08
COL4A1-204ENST00000543140 PAGE2Q7Z2X7 111 aa15.55■□□□□ 0.08
COL4A1-204ENST00000543140 RD3Q7Z3Z2 195 aa15.55■□□□□ 0.08
COL4A1-204ENST00000543140 OR52E1Q8NGJ3 308 aa15.55■□□□□ 0.08
COL4A1-204ENST00000543140 DCUN1D5Q9BTE7 237 aa15.55■□□□□ 0.08
COL4A1-204ENST00000543140 TMEM184CQ9NVA4 438 aa15.55■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms