RNA–Protein interactions for RNA: ENST00000540931.1

CLSTN3-210, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-210ENST00000540931 F2RL3Q96RI0 385 aa16.59■□□□□ 0.25
CLSTN3-210ENST00000540931 SHCBP1LQ9BZQ2 653 aa16.59■□□□□ 0.25
CLSTN3-210ENST00000540931 OR51B5Q9H339 312 aa16.59■□□□□ 0.25
CLSTN3-210ENST00000540931 DDX31Q9H8H2 851 aaKnown RBP16.59■□□□□ 0.25
CLSTN3-210ENST00000540931 WDR41Q9HAD4 459 aa16.59■□□□□ 0.25
CLSTN3-210ENST00000540931 TRPC4Q9UBN4 977 aa16.59■□□□□ 0.25
CLSTN3-210ENST00000540931 CROTQ9UKG9 612 aa16.59■□□□□ 0.25
CLSTN3-210ENST00000540931 TIMM22Q9Y584 194 aa16.59■□□□□ 0.25
CLSTN3-210ENST00000540931 FLNBO75369 2602 aaKnown RBP16.59■□□□□ 0.25
CLSTN3-210ENST00000540931 SEC16AO15027 2179 aa16.58■□□□□ 0.25
CLSTN3-210ENST00000540931 KLK10O43240 276 aa16.58■□□□□ 0.24
CLSTN3-210ENST00000540931 CHRNGP07510 517 aa16.58■□□□□ 0.24
CLSTN3-210ENST00000540931 CTSBP07858 339 aa16.58■□□□□ 0.24
CLSTN3-210ENST00000540931 DDX5P17844 614 aaKnown RBP16.58■□□□□ 0.24
CLSTN3-210ENST00000540931 MAPK1P28482 360 aa16.58■□□□□ 0.24
CLSTN3-210ENST00000540931 PPP2R1BP30154 601 aa16.58■□□□□ 0.24
CLSTN3-210ENST00000540931 BUD31P41223 144 aaPredicted RBP16.58■□□□□ 0.24
CLSTN3-210ENST00000540931 FOLR3P41439 243 aa16.58■□□□□ 0.24
CLSTN3-210ENST00000540931 CLN3Q13286 438 aa16.58■□□□□ 0.24
CLSTN3-210ENST00000540931 SSPNQ14714 243 aa16.58■□□□□ 0.24
CLSTN3-210ENST00000540931 ABRAXAS2Q15018 415 aa16.58■□□□□ 0.24
CLSTN3-210ENST00000540931 TUBB8Q3ZCM7 444 aa16.58■□□□□ 0.24
CLSTN3-210ENST00000540931 SGO1Q5FBB7 561 aa16.58■□□□□ 0.24
CLSTN3-210ENST00000540931 MLIPQ5VWP3 458 aa16.58■□□□□ 0.24
CLSTN3-210ENST00000540931 FAM9CQ8IZT9 166 aa16.58■□□□□ 0.24
CLSTN3-210ENST00000540931 OR2Y1Q8NGV0 311 aa16.58■□□□□ 0.24
CLSTN3-210ENST00000540931 OR51Q1Q8NH59 317 aa16.58■□□□□ 0.24
CLSTN3-210ENST00000540931 CKAP2Q8WWK9 683 aa16.58■□□□□ 0.24
CLSTN3-210ENST00000540931 PPP3R2Q96LZ3 170 aa16.58■□□□□ 0.24
CLSTN3-210ENST00000540931 MACROD1Q9BQ69 325 aa16.58■□□□□ 0.24
CLSTN3-210ENST00000540931 YIPF2Q9BWQ6 316 aa16.58■□□□□ 0.24
CLSTN3-210ENST00000540931 SYNPO2LQ9H987 977 aa16.58■□□□□ 0.24
CLSTN3-210ENST00000540931 PRDM7Q9NQW5 492 aa16.58■□□□□ 0.24
CLSTN3-210ENST00000540931 SEMA3GQ9NS98 782 aa16.58■□□□□ 0.24
CLSTN3-210ENST00000540931 DNAJC15Q9Y5T4 150 aa16.58■□□□□ 0.24
CLSTN3-210ENST00000540931 SDK2Q58EX2 2172 aa16.58■□□□□ 0.24
CLSTN3-210ENST00000540931 SPTBP11277 2137 aa16.57■□□□□ 0.24
CLSTN3-210ENST00000540931 A0A087WV48 116 aa16.57■□□□□ 0.24
CLSTN3-210ENST00000540931 A0A1B0GTL3 188 aa16.57■□□□□ 0.24
CLSTN3-210ENST00000540931 VSTM2BA6NLU5 285 aa16.57■□□□□ 0.24
CLSTN3-210ENST00000540931 ZNF891A8MT65 544 aaPredicted RBP16.57■□□□□ 0.24
CLSTN3-210ENST00000540931 PLPP1O14494 284 aa16.57■□□□□ 0.24
CLSTN3-210ENST00000540931 ACPPP15309 386 aa16.57■□□□□ 0.24
CLSTN3-210ENST00000540931 ATP5A1P25705 553 aaKnown RBP16.57■□□□□ 0.24
CLSTN3-210ENST00000540931 OR1D4P47884 311 aa16.57■□□□□ 0.24
CLSTN3-210ENST00000540931 RAB38P57729 211 aa16.57■□□□□ 0.24
CLSTN3-210ENST00000540931 GALNT18Q6P9A2 607 aa16.57■□□□□ 0.24
CLSTN3-210ENST00000540931 FAM198BQ6UWH4 519 aa16.57■□□□□ 0.24
CLSTN3-210ENST00000540931 RAB43Q86YS6 212 aa16.57■□□□□ 0.24
CLSTN3-210ENST00000540931 WDR75Q8IWA0 830 aaKnown RBP16.57■□□□□ 0.24
CLSTN3-210ENST00000540931 DDIASQ8IXT1 998 aa16.57■□□□□ 0.24
CLSTN3-210ENST00000540931 ACOT4Q8N9L9 421 aa16.57■□□□□ 0.24
CLSTN3-210ENST00000540931 PIWIL2Q8TC59 973 aaKnown RBP16.57■□□□□ 0.24
CLSTN3-210ENST00000540931 CT55Q8WUE5 264 aa16.57■□□□□ 0.24
CLSTN3-210ENST00000540931 TWIST2Q8WVJ9 160 aa16.57■□□□□ 0.24
CLSTN3-210ENST00000540931 TBC1D20Q96BZ9 403 aa16.57■□□□□ 0.24
CLSTN3-210ENST00000540931 KLHL31Q9H511 634 aa16.57■□□□□ 0.24
CLSTN3-210ENST00000540931 ACSS2Q9NR19 701 aa16.57■□□□□ 0.24
CLSTN3-210ENST00000540931 ZDHHC2Q9UIJ5 367 aa16.57■□□□□ 0.24
CLSTN3-210ENST00000540931 MCM8Q9UJA3 840 aa16.57■□□□□ 0.24
CLSTN3-210ENST00000540931 TCFL5Q9UL49 500 aa16.57■□□□□ 0.24
CLSTN3-210ENST00000540931 DAPP1Q9UN19 280 aa16.57■□□□□ 0.24
CLSTN3-210ENST00000540931 SSUH2Q9Y2M2 353 aa16.57■□□□□ 0.24
CLSTN3-210ENST00000540931 MAU2Q9Y6X3 613 aa16.57■□□□□ 0.24
CLSTN3-210ENST00000540931 AHCTF1Q8WYP5 2266 aa16.56■□□□□ 0.24
CLSTN3-210ENST00000540931 SGK494L7N484 410 aa16.56■□□□□ 0.24
CLSTN3-210ENST00000540931 CHST10O43529 356 aa16.56■□□□□ 0.24
CLSTN3-210ENST00000540931 TLX3O43711 291 aaPredicted RBP16.56■□□□□ 0.24
CLSTN3-210ENST00000540931 TGDSO95455 350 aa16.56■□□□□ 0.24
CLSTN3-210ENST00000540931 TBX6O95947 436 aaPredicted RBP16.56■□□□□ 0.24
CLSTN3-210ENST00000540931 ZGLP1P0C6A0 271 aa16.56■□□□□ 0.24
CLSTN3-210ENST00000540931 XCR1P46094 333 aa16.56■□□□□ 0.24
CLSTN3-210ENST00000540931 NKG7Q16617 165 aa16.56■□□□□ 0.24
CLSTN3-210ENST00000540931 UGT3A2Q3SY77 523 aa16.56■□□□□ 0.24
CLSTN3-210ENST00000540931 SPDYAQ5MJ70 313 aa16.56■□□□□ 0.24
CLSTN3-210ENST00000540931 CLEC6AQ6EIG7 209 aa16.56■□□□□ 0.24
CLSTN3-210ENST00000540931 ZNF595Q8IYB9 648 aa16.56■□□□□ 0.24
CLSTN3-210ENST00000540931 ENDOVQ8N8Q3 282 aaKnown RBP16.56■□□□□ 0.24
CLSTN3-210ENST00000540931 AMER3Q8N944 861 aa16.56■□□□□ 0.24
CLSTN3-210ENST00000540931 STT3BQ8TCJ2 826 aa16.56■□□□□ 0.24
CLSTN3-210ENST00000540931 CHTF18Q8WVB6 975 aa16.56■□□□□ 0.24
CLSTN3-210ENST00000540931 METTL21AQ8WXB1 218 aa16.56■□□□□ 0.24
CLSTN3-210ENST00000540931 SIKE1Q9BRV8 207 aa16.56■□□□□ 0.24
CLSTN3-210ENST00000540931 FAIM2Q9BWQ8 316 aa16.56■□□□□ 0.24
CLSTN3-210ENST00000540931 ACPTQ9BZG2 426 aa16.56■□□□□ 0.24
CLSTN3-210ENST00000540931 FARSBQ9NSD9 589 aaKnown RBP16.56■□□□□ 0.24
CLSTN3-210ENST00000540931 C1orf109Q9NX04 203 aa16.56■□□□□ 0.24
CLSTN3-210ENST00000540931 C19orf25Q9UFG5 118 aaPredicted RBP16.56■□□□□ 0.24
CLSTN3-210ENST00000540931 MAPRE3Q9UPY8 281 aa16.56■□□□□ 0.24
CLSTN3-210ENST00000540931 MMACHCQ9Y4U1 282 aa16.56■□□□□ 0.24
CLSTN3-210ENST00000540931 LOC101059948A0A1B0GTJ6 334 aa16.55■□□□□ 0.24
CLSTN3-210ENST00000540931 TERTO14746 1132 aaKnown RBP16.55■□□□□ 0.24
CLSTN3-210ENST00000540931 HDAC3O15379 428 aa16.55■□□□□ 0.24
CLSTN3-210ENST00000540931 RDH16O75452 317 aa16.55■□□□□ 0.24
CLSTN3-210ENST00000540931 CREG1O75629 220 aa16.55■□□□□ 0.24
CLSTN3-210ENST00000540931 BMP10O95393 424 aa16.55■□□□□ 0.24
CLSTN3-210ENST00000540931 STATHP02808 62 aa16.55■□□□□ 0.24
CLSTN3-210ENST00000540931 FHP07954 510 aa16.55■□□□□ 0.24
CLSTN3-210ENST00000540931 BSGP35613 385 aa16.55■□□□□ 0.24
CLSTN3-210ENST00000540931 FOXA1P55317 472 aa16.55■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms