RNA–Protein interactions for RNA: ENST00000540447.5

YBX3-208, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 6,393 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-208ENST00000540447 RPP40O75818 363 aaKnown RBP8.46□□□□□ -1.05
YBX3-208ENST00000540447 CH25HO95992 272 aa8.46□□□□□ -1.05
YBX3-208ENST00000540447 ARSBP15848 533 aa8.46□□□□□ -1.05
YBX3-208ENST00000540447 ITPKAP23677 461 aa8.46□□□□□ -1.05
YBX3-208ENST00000540447 LHX1P48742 406 aa8.46□□□□□ -1.05
YBX3-208ENST00000540447 ARHGAP11BQ3KRB8 267 aa8.46□□□□□ -1.05
YBX3-208ENST00000540447 ALG10Q5BKT4 473 aa8.46□□□□□ -1.05
YBX3-208ENST00000540447 H3F3CQ6NXT2 135 aa8.46□□□□□ -1.05
YBX3-208ENST00000540447 HACD2Q6Y1H2 254 aa8.46□□□□□ -1.05
YBX3-208ENST00000540447 UBE2R2Q712K3 238 aaPredicted RBP8.46□□□□□ -1.05
YBX3-208ENST00000540447 RANBP3LQ86VV4 465 aaPredicted RBP8.46□□□□□ -1.05
YBX3-208ENST00000540447 CAMK1GQ96NX5 476 aa8.46□□□□□ -1.05
YBX3-208ENST00000540447 PKMYT1Q99640 499 aa8.46□□□□□ -1.05
YBX3-208ENST00000540447 FAM83CQ9BQN1 747 aa8.46□□□□□ -1.05
YBX3-208ENST00000540447 HDHD5Q9BXW7 423 aa8.46□□□□□ -1.05
YBX3-208ENST00000540447 GLOD4Q9HC38 313 aa8.46□□□□□ -1.05
YBX3-208ENST00000540447 RIMS3Q9UJD0 308 aa8.46□□□□□ -1.05
YBX3-208ENST00000540447 NR2E3Q9Y5X4 410 aa8.46□□□□□ -1.05
YBX3-208ENST00000540447 POM121BA6NF01 834 aa8.46□□□□□ -1.05
YBX3-208ENST00000540447 RPP14O95059 124 aaKnown RBP8.46□□□□□ -1.05
YBX3-208ENST00000540447 GLAP06280 429 aa8.46□□□□□ -1.05
YBX3-208ENST00000540447 GIFP27352 417 aa8.46□□□□□ -1.05
YBX3-208ENST00000540447 KCNJ11Q14654 390 aa8.46□□□□□ -1.05
YBX3-208ENST00000540447 PDZD11Q5EBL8 140 aa8.46□□□□□ -1.05
YBX3-208ENST00000540447 BRAT1Q6PJG6 821 aa8.46□□□□□ -1.05
YBX3-208ENST00000540447 BLOC1S3Q6QNY0 202 aa8.46□□□□□ -1.05
YBX3-208ENST00000540447 ZNF550Q7Z398 422 aa8.46□□□□□ -1.05
YBX3-208ENST00000540447 LDB1Q86U70 411 aaPredicted RBP8.46□□□□□ -1.05
YBX3-208ENST00000540447 RBFAQ8N0V3 343 aa8.46□□□□□ -1.05
YBX3-208ENST00000540447 NAXEQ8NCW5 288 aa8.46□□□□□ -1.05
YBX3-208ENST00000540447 MUL1Q969V5 352 aa8.46□□□□□ -1.05
YBX3-208ENST00000540447 CSPG4P5Q96PW8 444 aa8.46□□□□□ -1.05
YBX3-208ENST00000540447 NEURL2Q9BR09 285 aa8.46□□□□□ -1.05
YBX3-208ENST00000540447 RIOX1Q9H6W3 641 aa8.46□□□□□ -1.05
YBX3-208ENST00000540447 NAALAD2Q9Y3Q0 740 aa8.46□□□□□ -1.05
YBX3-208ENST00000540447 TMEM72A0PK05 275 aa8.46□□□□□ -1.06
YBX3-208ENST00000540447 AGAP14A8MT82 685 aa8.46□□□□□ -1.06
YBX3-208ENST00000540447 J3QR89 54 aa8.46□□□□□ -1.06
YBX3-208ENST00000540447 M0R129 80 aa8.46□□□□□ -1.06
YBX3-208ENST00000540447 CAPN5O15484 640 aaPredicted RBP8.46□□□□□ -1.06
YBX3-208ENST00000540447 FGF1P05230 155 aa8.46□□□□□ -1.06
YBX3-208ENST00000540447 SMIM18P0DKX4 95 aa8.46□□□□□ -1.06
YBX3-208ENST00000540447 HTR1BP28222 390 aa8.46□□□□□ -1.06
YBX3-208ENST00000540447 KCNQ1P51787 676 aa8.46□□□□□ -1.06
YBX3-208ENST00000540447 CREMQ03060 361 aa8.46□□□□□ -1.06
YBX3-208ENST00000540447 TCTE1Q5JU00 501 aa8.46□□□□□ -1.06
YBX3-208ENST00000540447 ZNF585AQ6P3V2 769 aa8.46□□□□□ -1.06
YBX3-208ENST00000540447 TMEM205Q6UW68 189 aa8.46□□□□□ -1.06
YBX3-208ENST00000540447 JAGN1Q8N5M9 183 aa8.46□□□□□ -1.06
YBX3-208ENST00000540447 ZNF709Q8N972 641 aa8.46□□□□□ -1.06
YBX3-208ENST00000540447 RHBGQ9H310 441 aa8.46□□□□□ -1.06
YBX3-208ENST00000540447 ACKR4Q9NPB9 350 aa8.46□□□□□ -1.06
YBX3-208ENST00000540447 EIF2B3Q9NR50 452 aaKnown RBP8.46□□□□□ -1.06
YBX3-208ENST00000540447 SPAM1P38567 509 aa8.46□□□□□ -1.06
YBX3-208ENST00000540447 DGKGP49619 791 aa8.46□□□□□ -1.06
YBX3-208ENST00000540447 EIF4HQ15056 248 aaKnown RBP8.46□□□□□ -1.06
YBX3-208ENST00000540447 SLC39A12Q504Y0 691 aa8.46□□□□□ -1.06
YBX3-208ENST00000540447 NLRC3Q7RTR2 1065 aa8.46□□□□□ -1.06
YBX3-208ENST00000540447 OR13F1Q8NGS4 319 aa8.46□□□□□ -1.06
YBX3-208ENST00000540447 TSPEARQ8WU66 669 aa8.46□□□□□ -1.06
YBX3-208ENST00000540447 GIMAP1Q8WWP7 306 aa8.46□□□□□ -1.06
YBX3-208ENST00000540447 HAS2Q92819 552 aa8.46□□□□□ -1.06
YBX3-208ENST00000540447 SEMA3CQ99985 751 aa8.46□□□□□ -1.06
YBX3-208ENST00000540447 LIN7BQ9HAP6 207 aa8.46□□□□□ -1.06
YBX3-208ENST00000540447 ABCA8O94911 1581 aa8.46□□□□□ -1.06
YBX3-208ENST00000540447 VIRMAQ69YN4 1812 aaKnown RBP8.46□□□□□ -1.06
YBX3-208ENST00000540447 CLDN24A6NM45 220 aa8.46□□□□□ -1.06
YBX3-208ENST00000540447 CTDSP2O14595 271 aa8.46□□□□□ -1.06
YBX3-208ENST00000540447 TGFB1I1O43294 461 aa8.46□□□□□ -1.06
YBX3-208ENST00000540447 MED6O75586 246 aa8.46□□□□□ -1.06
YBX3-208ENST00000540447 HDCP19113 662 aa8.46□□□□□ -1.06
YBX3-208ENST00000540447 EPHX2P34913 555 aa8.46□□□□□ -1.06
YBX3-208ENST00000540447 CASP9P55211 416 aa8.46□□□□□ -1.06
YBX3-208ENST00000540447 MAXP61244 160 aa8.46□□□□□ -1.06
YBX3-208ENST00000540447 MSS51Q4VC12 460 aa8.46□□□□□ -1.06
YBX3-208ENST00000540447 OTOP1Q7RTM1 612 aa8.46□□□□□ -1.06
YBX3-208ENST00000540447 LYSMD3Q7Z3D4 306 aa8.46□□□□□ -1.06
YBX3-208ENST00000540447 CCDC54Q8NEL0 328 aa8.46□□□□□ -1.06
YBX3-208ENST00000540447 HERVK_113Q902F9 699 aa8.46□□□□□ -1.06
YBX3-208ENST00000540447 FYTTD1Q96QD9 318 aaKnown RBP8.46□□□□□ -1.06
YBX3-208ENST00000540447 TMEM39BQ9GZU3 492 aa8.46□□□□□ -1.06
YBX3-208ENST00000540447 TEX264Q9Y6I9 313 aa8.46□□□□□ -1.06
YBX3-208ENST00000540447 CEP170Q5SW79 1584 aa8.45□□□□□ -1.06
YBX3-208ENST00000540447 SLC43A1O75387 559 aa8.45□□□□□ -1.06
YBX3-208ENST00000540447 ADAP00813 363 aa8.45□□□□□ -1.06
YBX3-208ENST00000540447 CRHBPP24387 322 aa8.45□□□□□ -1.06
YBX3-208ENST00000540447 MPPE1Q53F39 396 aa8.45□□□□□ -1.06
YBX3-208ENST00000540447 RD3Q7Z3Z2 195 aa8.45□□□□□ -1.06
YBX3-208ENST00000540447 MINDY1Q8N5J2 469 aa8.45□□□□□ -1.06
YBX3-208ENST00000540447 SMAP2Q8WU79 429 aaPredicted RBP8.45□□□□□ -1.06
YBX3-208ENST00000540447 TRIB2Q92519 343 aa8.45□□□□□ -1.06
YBX3-208ENST00000540447 CHFRQ96EP1 664 aa8.45□□□□□ -1.06
YBX3-208ENST00000540447 MYOCQ99972 504 aa8.45□□□□□ -1.06
YBX3-208ENST00000540447 PUS1Q9Y606 427 aaKnown RBP eCLIP8.45□□□□□ -1.06
YBX3-208ENST00000540447 ROBO3Q96MS0 1386 aa8.45□□□□□ -1.06
YBX3-208ENST00000540447 PRORSD1PA6NEY8 169 aa8.45□□□□□ -1.06
YBX3-208ENST00000540447 GTPBP1O00178 669 aaKnown RBP8.45□□□□□ -1.06
YBX3-208ENST00000540447 MFSD11O43934 449 aa8.45□□□□□ -1.06
YBX3-208ENST00000540447 AKR1C4P17516 323 aa8.45□□□□□ -1.06
YBX3-208ENST00000540447 CHRNA4P43681 627 aa8.45□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 62.1 ms