RNA–Protein interactions for RNA: ENST00000540428.1

CBX3P4-202, Transcript of chromobox 3 pseudogene 4, humanhuman

TSL 2 BASIC

Gene CBX3P4, Length 423 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX3P4-202ENST00000540428 ADAP2Q9NPF8 381 aa11.18□□□□□ -0.62
CBX3P4-202ENST00000540428 PRTFDC1Q9NRG1 225 aa11.18□□□□□ -0.62
CBX3P4-202ENST00000540428 IGSF5Q9NSI5 407 aa11.18□□□□□ -0.62
CBX3P4-202ENST00000540428 SLC17A6Q9P2U8 582 aa11.18□□□□□ -0.62
CBX3P4-202ENST00000540428 IKZF3Q9UKT9 509 aa11.18□□□□□ -0.62
CBX3P4-202ENST00000540428 MRPS33Q9Y291 106 aaKnown RBP11.18□□□□□ -0.62
CBX3P4-202ENST00000540428 OARD1Q9Y530 152 aa11.18□□□□□ -0.62
CBX3P4-202ENST00000540428 HRH3Q9Y5N1 445 aa11.18□□□□□ -0.62
CBX3P4-202ENST00000540428 DCHS2Q6V1P9 2916 aa11.18□□□□□ -0.62
CBX3P4-202ENST00000540428 AKAP9Q99996 3911 aa11.17□□□□□ -0.62
CBX3P4-202ENST00000540428 GTF3C1Q12789 2109 aa11.17□□□□□ -0.62
CBX3P4-202ENST00000540428 LRIT2A6NDA9 550 aa11.17□□□□□ -0.62
CBX3P4-202ENST00000540428 A8MVJ9 347 aa11.17□□□□□ -0.62
CBX3P4-202ENST00000540428 ACOT7O00154 380 aa11.17□□□□□ -0.62
CBX3P4-202ENST00000540428 CDC7O00311 574 aa11.17□□□□□ -0.62
CBX3P4-202ENST00000540428 B3GALT2O43825 422 aa11.17□□□□□ -0.62
CBX3P4-202ENST00000540428 CLEC3AO75596 197 aa11.17□□□□□ -0.62
CBX3P4-202ENST00000540428 C1GALT1C1LP0DN25 315 aa11.17□□□□□ -0.62
CBX3P4-202ENST00000540428 MSX1P28360 303 aa11.17□□□□□ -0.62
CBX3P4-202ENST00000540428 RFC3P40938 356 aa11.17□□□□□ -0.62
CBX3P4-202ENST00000540428 PGGT1BP53609 377 aa11.17□□□□□ -0.62
CBX3P4-202ENST00000540428 GPR85P60893 370 aa11.17□□□□□ -0.62
CBX3P4-202ENST00000540428 SLC13A2Q13183 592 aa11.17□□□□□ -0.62
CBX3P4-202ENST00000540428 RUNX2Q13950 521 aa11.17□□□□□ -0.62
CBX3P4-202ENST00000540428 RCN2Q14257 317 aa11.17□□□□□ -0.62
CBX3P4-202ENST00000540428 MORF4L2Q15014 288 aa11.17□□□□□ -0.62
CBX3P4-202ENST00000540428 ELAVL1Q15717 326 aaKnown RBP11.17□□□□□ -0.62
CBX3P4-202ENST00000540428 STEAP4Q687X5 459 aa11.17□□□□□ -0.62
CBX3P4-202ENST00000540428 TRMT10BQ6PF06 316 aaKnown RBP11.17□□□□□ -0.62
CBX3P4-202ENST00000540428 TMIGD1Q6UXZ0 262 aa11.17□□□□□ -0.62
CBX3P4-202ENST00000540428 SLCO4C1Q6ZQN7 724 aa11.17□□□□□ -0.62
CBX3P4-202ENST00000540428 CEP128Q6ZU80 1094 aa11.17□□□□□ -0.62
CBX3P4-202ENST00000540428 ACAD11Q709F0 780 aa11.17□□□□□ -0.62
CBX3P4-202ENST00000540428 ADAMTSL2Q86TH1 951 aa11.17□□□□□ -0.62
CBX3P4-202ENST00000540428 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP11.17□□□□□ -0.62
CBX3P4-202ENST00000540428 KRT78Q8N1N4 520 aa11.17□□□□□ -0.62
CBX3P4-202ENST00000540428 OR52N2Q8NGI0 321 aa11.17□□□□□ -0.62
CBX3P4-202ENST00000540428 MS4A6EQ96DS6 147 aa11.17□□□□□ -0.62
CBX3P4-202ENST00000540428 EGFL8Q99944 293 aa11.17□□□□□ -0.62
CBX3P4-202ENST00000540428 ZDHHC11Q9H8X9 412 aa11.17□□□□□ -0.62
CBX3P4-202ENST00000540428 SLC24A3Q9HC58 644 aa11.17□□□□□ -0.62
CBX3P4-202ENST00000540428 KCNJ16Q9NPI9 418 aa11.17□□□□□ -0.62
CBX3P4-202ENST00000540428 PNO1Q9NRX1 252 aaKnown RBP11.17□□□□□ -0.62
CBX3P4-202ENST00000540428 HPF1Q9NWY4 346 aa11.17□□□□□ -0.62
CBX3P4-202ENST00000540428 GPRC5BQ9NZH0 403 aa11.17□□□□□ -0.62
CBX3P4-202ENST00000540428 ERVK-11Q9UQG0 969 aa11.17□□□□□ -0.62
CBX3P4-202ENST00000540428 RNF6Q9Y252 685 aa11.17□□□□□ -0.62
CBX3P4-202ENST00000540428 OR14I1A6ND48 311 aa11.16□□□□□ -0.62
CBX3P4-202ENST00000540428 NPEPPSL1A6NEC2 478 aa11.16□□□□□ -0.62
CBX3P4-202ENST00000540428 TMEM200CA6NKL6 621 aa11.16□□□□□ -0.62
CBX3P4-202ENST00000540428 ERI3O43414 337 aaKnown RBP11.16□□□□□ -0.62
CBX3P4-202ENST00000540428 OR2J2O76002 312 aa11.16□□□□□ -0.62
CBX3P4-202ENST00000540428 TOXO94900 526 aa11.16□□□□□ -0.62
CBX3P4-202ENST00000540428 WDR47O94967 919 aa11.16□□□□□ -0.62
CBX3P4-202ENST00000540428 CD1EP15812 388 aa11.16□□□□□ -0.62
CBX3P4-202ENST00000540428 SAT1P21673 171 aa11.16□□□□□ -0.62
CBX3P4-202ENST00000540428 IVDP26440 423 aa11.16□□□□□ -0.62
CBX3P4-202ENST00000540428 HNRNPH1P31943 449 aaKnown RBP11.16□□□□□ -0.62
CBX3P4-202ENST00000540428 ELK3P41970 407 aa11.16□□□□□ -0.62
CBX3P4-202ENST00000540428 SLC6A12P48065 614 aa11.16□□□□□ -0.62
CBX3P4-202ENST00000540428 ILF2Q12905 390 aaKnown RBP11.16□□□□□ -0.62
CBX3P4-202ENST00000540428 SLBPQ14493 270 aaKnown RBP eCLIP11.16□□□□□ -0.62
CBX3P4-202ENST00000540428 ADPRMQ3LIE5 342 aa11.16□□□□□ -0.62
CBX3P4-202ENST00000540428 EMC4Q5J8M3 183 aa11.16□□□□□ -0.62
CBX3P4-202ENST00000540428 NDUFAF5Q5TEU4 345 aa11.16□□□□□ -0.62
CBX3P4-202ENST00000540428 TRIM40Q6P9F5 258 aa11.16□□□□□ -0.62
CBX3P4-202ENST00000540428 ZC3HC1Q86WB0 502 aaKnown RBP11.16□□□□□ -0.62
CBX3P4-202ENST00000540428 DMRTC2Q8IXT2 367 aaPredicted RBP11.16□□□□□ -0.62
CBX3P4-202ENST00000540428 TMEM132CQ8N3T6 1108 aa11.16□□□□□ -0.62
CBX3P4-202ENST00000540428 OR2L5Q8NG80 312 aa11.16□□□□□ -0.62
CBX3P4-202ENST00000540428 ASB15Q8WXK1 588 aa11.16□□□□□ -0.62
CBX3P4-202ENST00000540428 DAZLQ92904 295 aaKnown RBP11.16□□□□□ -0.62
CBX3P4-202ENST00000540428 RHBDF1Q96CC6 855 aa11.16□□□□□ -0.62
CBX3P4-202ENST00000540428 CFAP36Q96G28 342 aa11.16□□□□□ -0.62
CBX3P4-202ENST00000540428 QRFPRQ96P65 431 aa11.16□□□□□ -0.62
CBX3P4-202ENST00000540428 EHD1Q9H4M9 534 aa11.16□□□□□ -0.62
CBX3P4-202ENST00000540428 POPDC3Q9HBV1 291 aa11.16□□□□□ -0.62
CBX3P4-202ENST00000540428 NPDC1Q9NQX5 325 aaPredicted RBP11.16□□□□□ -0.62
CBX3P4-202ENST00000540428 DEPPQ9NTK1 212 aa11.16□□□□□ -0.62
CBX3P4-202ENST00000540428 KCMF1Q9P0J7 381 aa11.16□□□□□ -0.62
CBX3P4-202ENST00000540428 MYOTQ9UBF9 498 aa11.16□□□□□ -0.62
CBX3P4-202ENST00000540428 TNFRSF10DQ9UBN6 386 aa11.16□□□□□ -0.62
CBX3P4-202ENST00000540428 KCNN3Q9UGI6 736 aa11.16□□□□□ -0.62
CBX3P4-202ENST00000540428 CHMP2BQ9UQN3 213 aa11.16□□□□□ -0.62
CBX3P4-202ENST00000540428 TEX264Q9Y6I9 313 aa11.16□□□□□ -0.62
CBX3P4-202ENST00000540428 HIVEP1P15822 2718 aa11.16□□□□□ -0.62
CBX3P4-202ENST00000540428 FAM95CA0A1B0GW59 222 aa11.15□□□□□ -0.62
CBX3P4-202ENST00000540428 ANKDD1BA6NHY2 528 aa11.15□□□□□ -0.62
CBX3P4-202ENST00000540428 FAM90A27PA6NNH2 459 aa11.15□□□□□ -0.62
CBX3P4-202ENST00000540428 TGFBR3LH3BV60 316 aa11.15□□□□□ -0.62
CBX3P4-202ENST00000540428 CYR61O00622 381 aa11.15□□□□□ -0.62
CBX3P4-202ENST00000540428 BCKDKO14874 412 aa11.15□□□□□ -0.62
CBX3P4-202ENST00000540428 PRKNO60260 465 aaPredicted RBP11.15□□□□□ -0.62
CBX3P4-202ENST00000540428 CTNSO60931 367 aa11.15□□□□□ -0.62
CBX3P4-202ENST00000540428 IGHG3P01860 377 aa11.15□□□□□ -0.62
CBX3P4-202ENST00000540428 HOXD4P09016 255 aaPredicted RBP11.15□□□□□ -0.62
CBX3P4-202ENST00000540428 PPP2R1BP30154 601 aa11.15□□□□□ -0.62
CBX3P4-202ENST00000540428 HNRNPFP52597 415 aaKnown RBP11.15□□□□□ -0.62
CBX3P4-202ENST00000540428 MTTPP55157 894 aa11.15□□□□□ -0.62
CBX3P4-202ENST00000540428 PPIAP62937 165 aaKnown RBP11.15□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms