RNA–Protein interactions for RNA: ENST00000538475.5

USP28-207, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 1,081 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-207ENST00000538475 OR2T11Q8NH01 316 aa6.43□□□□□ -1.38
USP28-207ENST00000538475 VANGL1Q8TAA9 524 aaPredicted RBP6.43□□□□□ -1.38
USP28-207ENST00000538475 TMEM163Q8TC26 289 aa6.43□□□□□ -1.38
USP28-207ENST00000538475 ZNF431Q8TF32 576 aaPredicted RBP6.43□□□□□ -1.38
USP28-207ENST00000538475 RNF34Q969K3 372 aa6.43□□□□□ -1.38
USP28-207ENST00000538475 TADA1Q96BN2 335 aa6.43□□□□□ -1.38
USP28-207ENST00000538475 FAM149B1Q96BN6 582 aa6.43□□□□□ -1.38
USP28-207ENST00000538475 ULK4Q96C45 1275 aa6.43□□□□□ -1.38
USP28-207ENST00000538475 PABPC5Q96DU9 382 aaKnown RBP6.43□□□□□ -1.38
USP28-207ENST00000538475 CDCA5Q96FF9 252 aa6.43□□□□□ -1.38
USP28-207ENST00000538475 IMP4Q96G21 291 aaKnown RBP6.43□□□□□ -1.38
USP28-207ENST00000538475 DIRAS2Q96HU8 199 aa6.43□□□□□ -1.38
USP28-207ENST00000538475 PRMT6Q96LA8 375 aaPredicted RBP6.43□□□□□ -1.38
USP28-207ENST00000538475 PCYT2Q99447 389 aa6.43□□□□□ -1.38
USP28-207ENST00000538475 MRPL45Q9BRJ2 306 aaKnown RBP6.43□□□□□ -1.38
USP28-207ENST00000538475 C7orf50Q9BRJ6 194 aaKnown RBP6.43□□□□□ -1.38
USP28-207ENST00000538475 COLEC11Q9BWP8 271 aa6.43□□□□□ -1.38
USP28-207ENST00000538475 MND1Q9BWT6 205 aa6.43□□□□□ -1.38
USP28-207ENST00000538475 ACTR6Q9GZN1 396 aa6.43□□□□□ -1.38
USP28-207ENST00000538475 FN3KQ9H479 309 aa6.43□□□□□ -1.38
USP28-207ENST00000538475 WDCPQ9H6R7 721 aa6.43□□□□□ -1.38
USP28-207ENST00000538475 RC3H2Q9HBD1 1191 aaKnown RBP6.43□□□□□ -1.38
USP28-207ENST00000538475 CD93Q9NPY3 652 aa6.43□□□□□ -1.38
USP28-207ENST00000538475 IFT46Q9NQC8 304 aa6.43□□□□□ -1.38
USP28-207ENST00000538475 ITM2CQ9NQX7 267 aa6.43□□□□□ -1.38
USP28-207ENST00000538475 PCDHB16Q9NRJ7 776 aa6.43□□□□□ -1.38
USP28-207ENST00000538475 PIGVQ9NUD9 493 aa6.43□□□□□ -1.38
USP28-207ENST00000538475 IMPAD1Q9NX62 359 aa6.43□□□□□ -1.38
USP28-207ENST00000538475 THUMPD1Q9NXG2 353 aaKnown RBP6.43□□□□□ -1.38
USP28-207ENST00000538475 ERAP1Q9NZ08 941 aa6.43□□□□□ -1.38
USP28-207ENST00000538475 TRPM5Q9NZQ8 1165 aa6.43□□□□□ -1.38
USP28-207ENST00000538475 DUX4Q9UBX2 424 aa6.43□□□□□ -1.38
USP28-207ENST00000538475 ZNF70Q9UC06 446 aaPredicted RBP6.43□□□□□ -1.38
USP28-207ENST00000538475 OR12D3Q9UGF7 316 aa6.43□□□□□ -1.38
USP28-207ENST00000538475 SLC2A6Q9UGQ3 507 aa6.43□□□□□ -1.38
USP28-207ENST00000538475 NDOR1Q9UHB4 597 aa6.43□□□□□ -1.38
USP28-207ENST00000538475 TRPS1Q9UHF7 1281 aa6.43□□□□□ -1.38
USP28-207ENST00000538475 SLC23A1Q9UHI7 598 aa6.43□□□□□ -1.38
USP28-207ENST00000538475 CYB5R1Q9UHQ9 305 aa6.43□□□□□ -1.38
USP28-207ENST00000538475 AGO1Q9UL18 857 aaKnown RBP6.43□□□□□ -1.38
USP28-207ENST00000538475 UBQLN1Q9UMX0 589 aaKnown RBP6.43□□□□□ -1.38
USP28-207ENST00000538475 GSTK1Q9Y2Q3 226 aa6.43□□□□□ -1.38
USP28-207ENST00000538475 KCNK7Q9Y2U2 307 aa6.43□□□□□ -1.38
USP28-207ENST00000538475 A0A0B4J293 547 aa6.42□□□□□ -1.38
USP28-207ENST00000538475 LOC285095A0A1B0GVY8 99 aa6.42□□□□□ -1.38
USP28-207ENST00000538475 RPS10-NUDT3A0A1W2PQS6 291 aa6.42□□□□□ -1.38
USP28-207ENST00000538475 A8MV72 311 aaPredicted RBP6.42□□□□□ -1.38
USP28-207ENST00000538475 CACNB4O00305 520 aaPredicted RBP6.42□□□□□ -1.38
USP28-207ENST00000538475 QSOX1O00391 747 aa6.42□□□□□ -1.38
USP28-207ENST00000538475 GFRA2O00451 464 aa6.42□□□□□ -1.38
USP28-207ENST00000538475 E2F3O00716 465 aa6.42□□□□□ -1.38
USP28-207ENST00000538475 CASC3O15234 703 aaKnown RBP6.42□□□□□ -1.38
USP28-207ENST00000538475 KCNQ2O43526 872 aa6.42□□□□□ -1.38
USP28-207ENST00000538475 PRKYO43930 277 aa6.42□□□□□ -1.38
USP28-207ENST00000538475 MAFKO60675 156 aa6.42□□□□□ -1.38
USP28-207ENST00000538475 ECI2O75521 394 aa6.42□□□□□ -1.38
USP28-207ENST00000538475 USP2O75604 605 aaPredicted RBP6.42□□□□□ -1.38
USP28-207ENST00000538475 PPM1BO75688 479 aa6.42□□□□□ -1.38
USP28-207ENST00000538475 GPX5O75715 221 aa6.42□□□□□ -1.38
USP28-207ENST00000538475 RPP40O75818 363 aaKnown RBP6.42□□□□□ -1.38
USP28-207ENST00000538475 SIX3O95343 332 aaPredicted RBP6.42□□□□□ -1.38
USP28-207ENST00000538475 LDOC1O95751 146 aaPredicted RBP6.42□□□□□ -1.38
USP28-207ENST00000538475 EOMESO95936 686 aa6.42□□□□□ -1.38
USP28-207ENST00000538475 LALBAP00709 142 aa6.42□□□□□ -1.38
USP28-207ENST00000538475 PTHP01270 115 aa6.42□□□□□ -1.38
USP28-207ENST00000538475 STSP08842 583 aa6.42□□□□□ -1.38
USP28-207ENST00000538475 CD8BP10966 210 aa6.42□□□□□ -1.38
USP28-207ENST00000538475 NAT2P11245 290 aa6.42□□□□□ -1.38
USP28-207ENST00000538475 SLC2A4P14672 509 aa6.42□□□□□ -1.38
USP28-207ENST00000538475 ARSAP15289 507 aa6.42□□□□□ -1.38
USP28-207ENST00000538475 DDCP20711 480 aa6.42□□□□□ -1.38
USP28-207ENST00000538475 LHCGRP22888 699 aa6.42□□□□□ -1.38
USP28-207ENST00000538475 RPS3P23396 243 aaKnown RBP eCLIP6.42□□□□□ -1.38
USP28-207ENST00000538475 STOMP27105 288 aa6.42□□□□□ -1.38
USP28-207ENST00000538475 C21orf33P30042 268 aaPredicted RBP6.42□□□□□ -1.38
USP28-207ENST00000538475 CALCRP30988 508 aa6.42□□□□□ -1.38
USP28-207ENST00000538475 FGF9P31371 208 aaPredicted RBP6.42□□□□□ -1.38
USP28-207ENST00000538475 S100A3P33764 101 aa6.42□□□□□ -1.38
USP28-207ENST00000538475 KDELR2P33947 212 aa6.42□□□□□ -1.38
USP28-207ENST00000538475 TRIM23P36406 574 aa6.42□□□□□ -1.38
USP28-207ENST00000538475 TGFBR1P36897 503 aa6.42□□□□□ -1.38
USP28-207ENST00000538475 NUP62P37198 522 aaPredicted RBP6.42□□□□□ -1.38
USP28-207ENST00000538475 CRYBB2P43320 205 aa6.42□□□□□ -1.38
USP28-207ENST00000538475 SOX9P48436 509 aa6.42□□□□□ -1.38
USP28-207ENST00000538475 STC1P52823 247 aa6.42□□□□□ -1.38
USP28-207ENST00000538475 HMGA2P52926 109 aa6.42□□□□□ -1.38
USP28-207ENST00000538475 C21orf58P58505 322 aa6.42□□□□□ -1.38
USP28-207ENST00000538475 DAOAP59103 153 aa6.42□□□□□ -1.38
USP28-207ENST00000538475 ABATP80404 500 aa6.42□□□□□ -1.38
USP28-207ENST00000538475 FPGSQ05932 587 aa6.42□□□□□ -1.38
USP28-207ENST00000538475 ADIGQ0VDE8 80 aa6.42□□□□□ -1.38
USP28-207ENST00000538475 MAP4K2Q12851 820 aa6.42□□□□□ -1.38
USP28-207ENST00000538475 LAPTM5Q13571 262 aa6.42□□□□□ -1.38
USP28-207ENST00000538475 TP53BP2Q13625 1128 aa6.42□□□□□ -1.38
USP28-207ENST00000538475 ZNF273Q14593 569 aa6.42□□□□□ -1.38
USP28-207ENST00000538475 TSTQ16762 297 aaKnown RBP6.42□□□□□ -1.38
USP28-207ENST00000538475 VMACQ2NL98 169 aa6.42□□□□□ -1.38
USP28-207ENST00000538475 SV2CQ496J9 727 aa6.42□□□□□ -1.38
USP28-207ENST00000538475 IQCCQ4KMZ1 466 aa6.42□□□□□ -1.38
USP28-207ENST00000538475 PAN2Q504Q3 1202 aaKnown RBP6.42□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 116.5 ms