RNA–Protein interactions for RNA: ENST00000537178.5

CLIP1-209, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 5,229 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-209ENST00000537178 ZNF45Q02386 682 aa10.28□□□□□ -0.76
CLIP1-209ENST00000537178 C10orf62Q5T681 223 aaPredicted RBP10.28□□□□□ -0.76
CLIP1-209ENST00000537178 TICAM1Q8IUC6 712 aa10.28□□□□□ -0.76
CLIP1-209ENST00000537178 MMAAQ8IVH4 418 aaKnown RBP10.28□□□□□ -0.76
CLIP1-209ENST00000537178 GID4Q8IVV7 300 aa10.28□□□□□ -0.76
CLIP1-209ENST00000537178 SLC15A3Q8IY34 581 aa10.28□□□□□ -0.76
CLIP1-209ENST00000537178 PIAS4Q8N2W9 510 aaPredicted RBP10.28□□□□□ -0.76
CLIP1-209ENST00000537178 OR4F6Q8NGB9 312 aa10.28□□□□□ -0.76
CLIP1-209ENST00000537178 HMGB4Q8WW32 186 aa10.28□□□□□ -0.76
CLIP1-209ENST00000537178 BIRC7Q96CA5 298 aa10.28□□□□□ -0.76
CLIP1-209ENST00000537178 POTEKPQ9BYX7 375 aa10.28□□□□□ -0.76
CLIP1-209ENST00000537178 C1orf21Q9H246 121 aa10.28□□□□□ -0.76
CLIP1-209ENST00000537178 SLC39A1Q9NY26 324 aa10.28□□□□□ -0.76
CLIP1-209ENST00000537178 LOC730098B7Z3J9 87 aa10.28□□□□□ -0.76
CLIP1-209ENST00000537178 BTBD19C9JJ37 291 aa10.28□□□□□ -0.76
CLIP1-209ENST00000537178 IFNA5P01569 189 aa10.28□□□□□ -0.76
CLIP1-209ENST00000537178 HTR2AP28223 471 aa10.28□□□□□ -0.76
CLIP1-209ENST00000537178 EMX2Q04743 252 aa10.28□□□□□ -0.76
CLIP1-209ENST00000537178 PPP1R8Q12972 351 aaKnown RBP10.28□□□□□ -0.76
CLIP1-209ENST00000537178 HMBOX1Q6NT76 420 aa10.28□□□□□ -0.76
CLIP1-209ENST00000537178 NIPAL1Q6NVV3 410 aa10.28□□□□□ -0.76
CLIP1-209ENST00000537178 TCEANCQ8N8B7 351 aa10.28□□□□□ -0.76
CLIP1-209ENST00000537178 SCAMP5Q8TAC9 235 aa10.28□□□□□ -0.76
CLIP1-209ENST00000537178 POC1BQ8TC44 478 aa10.28□□□□□ -0.76
CLIP1-209ENST00000537178 FCAMRQ8WWV6 532 aa10.28□□□□□ -0.76
CLIP1-209ENST00000537178 STRA6Q9BX79 667 aa10.28□□□□□ -0.76
CLIP1-209ENST00000537178 FZD8Q9H461 694 aa10.28□□□□□ -0.76
CLIP1-209ENST00000537178 KHNYNO15037 678 aaKnown RBP10.28□□□□□ -0.76
CLIP1-209ENST00000537178 PLSCR1O15162 318 aa10.28□□□□□ -0.76
CLIP1-209ENST00000537178 RBBP9O75884 186 aa10.28□□□□□ -0.76
CLIP1-209ENST00000537178 ZNF35P13682 527 aa10.28□□□□□ -0.76
CLIP1-209ENST00000537178 AOC1P19801 751 aa10.28□□□□□ -0.76
CLIP1-209ENST00000537178 SEMA3AQ14563 771 aa10.28□□□□□ -0.76
CLIP1-209ENST00000537178 PTCHD3Q3KNS1 767 aa10.28□□□□□ -0.76
CLIP1-209ENST00000537178 TIGD5Q53EQ6 642 aa10.28□□□□□ -0.76
CLIP1-209ENST00000537178 FBXL22Q6P050 247 aa10.28□□□□□ -0.76
CLIP1-209ENST00000537178 SHQ1Q6PI26 577 aaKnown RBP10.28□□□□□ -0.76
CLIP1-209ENST00000537178 AGTRAPQ6RW13 159 aa10.28□□□□□ -0.76
CLIP1-209ENST00000537178 TPRG1Q6ZUI0 275 aa10.28□□□□□ -0.76
CLIP1-209ENST00000537178 ZC3HC1Q86WB0 502 aaKnown RBP10.28□□□□□ -0.76
CLIP1-209ENST00000537178 SLCO2A1Q92959 643 aa10.28□□□□□ -0.76
CLIP1-209ENST00000537178 HSPBAP1Q96EW2 488 aa10.28□□□□□ -0.76
CLIP1-209ENST00000537178 LDHAL6BQ9BYZ2 381 aaPredicted RBP10.28□□□□□ -0.76
CLIP1-209ENST00000537178 AGAP5A6NIR3 686 aa10.27□□□□□ -0.76
CLIP1-209ENST00000537178 F5H0A9 414 aaPredicted RBP10.27□□□□□ -0.76
CLIP1-209ENST00000537178 PMM2O15305 246 aa10.27□□□□□ -0.76
CLIP1-209ENST00000537178 CD40LGP29965 261 aa10.27□□□□□ -0.76
CLIP1-209ENST00000537178 MRPL49Q13405 166 aaKnown RBP10.27□□□□□ -0.76
CLIP1-209ENST00000537178 TRAM1Q15629 374 aa10.27□□□□□ -0.76
CLIP1-209ENST00000537178 SIRPB2Q5JXA9 342 aa10.27□□□□□ -0.76
CLIP1-209ENST00000537178 GTF2IRD2BQ6EKJ0 949 aa10.27□□□□□ -0.76
CLIP1-209ENST00000537178 GTF2IRD2Q86UP8 949 aa10.27□□□□□ -0.76
CLIP1-209ENST00000537178 ZNF283Q8N7M2 679 aa10.27□□□□□ -0.76
CLIP1-209ENST00000537178 PSD4Q8NDX1 1056 aa10.27□□□□□ -0.76
CLIP1-209ENST00000537178 SLC5A11Q8WWX8 675 aa10.27□□□□□ -0.76
CLIP1-209ENST00000537178 TMEM234Q8WY98 164 aa10.27□□□□□ -0.76
CLIP1-209ENST00000537178 RAD9AQ99638 391 aa10.27□□□□□ -0.76
CLIP1-209ENST00000537178 MCHR1Q99705 422 aa10.27□□□□□ -0.76
CLIP1-209ENST00000537178 NTPCRQ9BSD7 190 aaKnown RBP10.27□□□□□ -0.76
CLIP1-209ENST00000537178 VNN3Q9NY84 501 aa10.27□□□□□ -0.76
CLIP1-209ENST00000537178 TAS2R3Q9NYW6 316 aa10.27□□□□□ -0.76
CLIP1-209ENST00000537178 TMPRSS11EQ9UL52 423 aa10.27□□□□□ -0.76
CLIP1-209ENST00000537178 ZNF536O15090 1300 aa10.27□□□□□ -0.76
CLIP1-209ENST00000537178 A0A1B0GVT2 93 aa10.27□□□□□ -0.77
CLIP1-209ENST00000537178 LCHNA4D1U4 455 aa10.27□□□□□ -0.77
CLIP1-209ENST00000537178 UPK3BL1B0FP48 263 aa10.27□□□□□ -0.77
CLIP1-209ENST00000537178 UPK3BL2E5RIL1 263 aa10.27□□□□□ -0.77
CLIP1-209ENST00000537178 AURKAO14965 403 aa10.27□□□□□ -0.77
CLIP1-209ENST00000537178 B4GALT2O60909 372 aa10.27□□□□□ -0.77
CLIP1-209ENST00000537178 SCGB2A1O75556 95 aa10.27□□□□□ -0.77
CLIP1-209ENST00000537178 IFNA1P01562 189 aa10.27□□□□□ -0.77
CLIP1-209ENST00000537178 CCNOP22674 350 aa10.27□□□□□ -0.77
CLIP1-209ENST00000537178 LASP1Q14847 261 aaKnown RBP10.27□□□□□ -0.77
CLIP1-209ENST00000537178 CYBRD1Q53TN4 286 aa10.27□□□□□ -0.77
CLIP1-209ENST00000537178 NAPRTQ6XQN6 538 aa10.27□□□□□ -0.77
CLIP1-209ENST00000537178 CLEC20AQ6ZU45 233 aa10.27□□□□□ -0.77
CLIP1-209ENST00000537178 SPATC1Q76KD6 591 aa10.27□□□□□ -0.77
CLIP1-209ENST00000537178 ZNF550Q7Z398 422 aa10.27□□□□□ -0.77
CLIP1-209ENST00000537178 ZSWIM9Q86XI8 627 aa10.27□□□□□ -0.77
CLIP1-209ENST00000537178 DCUN1D3Q8IWE4 304 aa10.27□□□□□ -0.77
CLIP1-209ENST00000537178 LAS2Q8IYD9 372 aa10.27□□□□□ -0.77
CLIP1-209ENST00000537178 MOAP1Q96BY2 351 aa10.27□□□□□ -0.77
CLIP1-209ENST00000537178 PKP2Q99959 881 aa10.27□□□□□ -0.77
CLIP1-209ENST00000537178 DERL2Q9GZP9 239 aa10.27□□□□□ -0.77
CLIP1-209ENST00000537178 SYT4Q9H2B2 425 aa10.27□□□□□ -0.77
CLIP1-209ENST00000537178 LDAHQ9H6V9 325 aa10.27□□□□□ -0.77
CLIP1-209ENST00000537178 MKS1Q9NXB0 559 aa10.27□□□□□ -0.77
CLIP1-209ENST00000537178 SERTAD3Q9UJW9 196 aa10.27□□□□□ -0.77
CLIP1-209ENST00000537178 FBXL3Q9UKT7 428 aa10.27□□□□□ -0.77
CLIP1-209ENST00000537178 EDDM13A0A1B0GTR0 161 aa10.27□□□□□ -0.77
CLIP1-209ENST00000537178 A0A1W2PRU2 124 aa10.27□□□□□ -0.77
CLIP1-209ENST00000537178 ITM2AO43736 263 aa10.27□□□□□ -0.77
CLIP1-209ENST00000537178 BCAS2O75934 225 aaPredicted RBP10.27□□□□□ -0.77
CLIP1-209ENST00000537178 SOX14O95416 240 aa10.27□□□□□ -0.77
CLIP1-209ENST00000537178 ALPIP09923 528 aa10.27□□□□□ -0.77
CLIP1-209ENST00000537178 HOXB9P17482 250 aaPredicted RBP10.27□□□□□ -0.77
CLIP1-209ENST00000537178 ENDOUP21128 410 aaKnown RBP10.27□□□□□ -0.77
CLIP1-209ENST00000537178 RPL10P27635 214 aaKnown RBP10.27□□□□□ -0.77
CLIP1-209ENST00000537178 FNTBP49356 437 aa10.27□□□□□ -0.77
CLIP1-209ENST00000537178 RAB8AP61006 207 aa10.27□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms