RNA–Protein interactions for RNA: ENST00000537004.5

CLIP1-208, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,000 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-208ENST00000537004 CSTF2P33240 577 aaKnown RBP eCLIP11.4□□□□□ -0.59
CLIP1-208ENST00000537004 GRIA3P42263 894 aa11.4□□□□□ -0.59
CLIP1-208ENST00000537004 EPHA4P54764 986 aa11.4□□□□□ -0.59
CLIP1-208ENST00000537004 EEFSECP57772 596 aaKnown RBP11.4□□□□□ -0.59
CLIP1-208ENST00000537004 TBPL1P62380 186 aa11.4□□□□□ -0.59
CLIP1-208ENST00000537004 LIPEQ05469 1076 aa11.4□□□□□ -0.59
CLIP1-208ENST00000537004 PWP1Q13610 501 aa11.4□□□□□ -0.59
CLIP1-208ENST00000537004 SPANXN4Q5MJ08 99 aa11.4□□□□□ -0.59
CLIP1-208ENST00000537004 CAPN13Q6MZZ7 669 aaPredicted RBP11.4□□□□□ -0.59
CLIP1-208ENST00000537004 ARHGAP22Q7Z5H3 698 aa11.4□□□□□ -0.59
CLIP1-208ENST00000537004 IFNEQ86WN2 208 aa11.4□□□□□ -0.59
CLIP1-208ENST00000537004 FAM9CQ8IZT9 166 aa11.4□□□□□ -0.59
CLIP1-208ENST00000537004 AGBL5Q8NDL9 886 aa11.4□□□□□ -0.59
CLIP1-208ENST00000537004 OR9A1PQ8NGU1 263 aa11.4□□□□□ -0.59
CLIP1-208ENST00000537004 NEIL2Q969S2 332 aa11.4□□□□□ -0.59
CLIP1-208ENST00000537004 SLCO4A1Q96BD0 722 aa11.4□□□□□ -0.59
CLIP1-208ENST00000537004 APIPQ96GX9 242 aa11.4□□□□□ -0.59
CLIP1-208ENST00000537004 MTERF1Q99551 399 aaKnown RBP11.4□□□□□ -0.59
CLIP1-208ENST00000537004 CGREF1Q99674 301 aa11.4□□□□□ -0.59
CLIP1-208ENST00000537004 CTRCQ99895 268 aa11.4□□□□□ -0.59
CLIP1-208ENST00000537004 PKP2Q99959 881 aa11.4□□□□□ -0.59
CLIP1-208ENST00000537004 KCTD14Q9BQ13 255 aaPredicted RBP11.4□□□□□ -0.59
CLIP1-208ENST00000537004 TRIM15Q9C019 465 aa11.4□□□□□ -0.59
CLIP1-208ENST00000537004 OR52A5Q9H2C5 316 aa11.4□□□□□ -0.59
CLIP1-208ENST00000537004 ACTR3BQ9P1U1 418 aa11.4□□□□□ -0.59
CLIP1-208ENST00000537004 KCNE2Q9Y6J6 123 aa11.4□□□□□ -0.59
CLIP1-208ENST00000537004 EFCAB7A8K855 629 aa11.39□□□□□ -0.59
CLIP1-208ENST00000537004 H0YIV9 168 aa11.39□□□□□ -0.59
CLIP1-208ENST00000537004 ARPC2O15144 300 aa11.39□□□□□ -0.59
CLIP1-208ENST00000537004 KCNJ13O60928 360 aa11.39□□□□□ -0.59
CLIP1-208ENST00000537004 KCNH1O95259 989 aa11.39□□□□□ -0.59
CLIP1-208ENST00000537004 PGRP06401 933 aa11.39□□□□□ -0.59
CLIP1-208ENST00000537004 MTHFD1P11586 935 aaKnown RBP11.39□□□□□ -0.59
CLIP1-208ENST00000537004 SDC1P18827 310 aa11.39□□□□□ -0.59
CLIP1-208ENST00000537004 SEPHS1P49903 392 aa11.39□□□□□ -0.59
CLIP1-208ENST00000537004 AQP4P55087 323 aa11.39□□□□□ -0.59
CLIP1-208ENST00000537004 CLDN8P56748 225 aa11.39□□□□□ -0.59
CLIP1-208ENST00000537004 PLIN5Q00G26 463 aa11.39□□□□□ -0.59
CLIP1-208ENST00000537004 RPA4Q13156 261 aa11.39□□□□□ -0.59
CLIP1-208ENST00000537004 CLN3Q13286 438 aa11.39□□□□□ -0.59
CLIP1-208ENST00000537004 DDX39BQ13838 428 aaKnown RBP11.39□□□□□ -0.59
CLIP1-208ENST00000537004 MAPKAPK3Q16644 382 aa11.39□□□□□ -0.59
CLIP1-208ENST00000537004 CLPPQ16740 277 aaPredicted RBP11.39□□□□□ -0.59
CLIP1-208ENST00000537004 CAPRIN2Q6IMN6 1127 aaKnown RBP11.39□□□□□ -0.59
CLIP1-208ENST00000537004 LCN8Q6JVE9 175 aa11.39□□□□□ -0.59
CLIP1-208ENST00000537004 UNC5DQ6UXZ4 953 aa11.39□□□□□ -0.59
CLIP1-208ENST00000537004 PDZD3Q86UT5 571 aa11.39□□□□□ -0.59
CLIP1-208ENST00000537004 PTRH1Q86Y79 214 aaKnown RBP11.39□□□□□ -0.59
CLIP1-208ENST00000537004 SPPL2CQ8IUH8 684 aa11.39□□□□□ -0.59
CLIP1-208ENST00000537004 TSSK3Q96PN8 268 aa11.39□□□□□ -0.59
CLIP1-208ENST00000537004 MUC13Q9H3R2 512 aa11.39□□□□□ -0.59
CLIP1-208ENST00000537004 UCK1Q9HA47 277 aa11.39□□□□□ -0.59
CLIP1-208ENST00000537004 APMAPQ9HDC9 416 aa11.39□□□□□ -0.59
CLIP1-208ENST00000537004 GPRC5BQ9NZH0 403 aa11.39□□□□□ -0.59
CLIP1-208ENST00000537004 AKAP7Q9P0M2 348 aaPredicted RBP11.39□□□□□ -0.59
CLIP1-208ENST00000537004 B3GALT1Q9Y5Z6 326 aa11.39□□□□□ -0.59
CLIP1-208ENST00000537004 CFAP46Q8IYW2 2715 aa11.39□□□□□ -0.59
CLIP1-208ENST00000537004 AQP12BA6NM10 295 aa11.38□□□□□ -0.59
CLIP1-208ENST00000537004 ZNF839A8K0R7 811 aa11.38□□□□□ -0.59
CLIP1-208ENST00000537004 SMNDC1O75940 238 aaKnown RBP eCLIP11.38□□□□□ -0.59
CLIP1-208ENST00000537004 SLC35G4P0C7Q5 338 aa11.38□□□□□ -0.59
CLIP1-208ENST00000537004 ACPPP15309 386 aa11.38□□□□□ -0.59
CLIP1-208ENST00000537004 TACR1P25103 407 aa11.38□□□□□ -0.59
CLIP1-208ENST00000537004 TRA2AQ13595 282 aaKnown RBP eCLIP11.38□□□□□ -0.59
CLIP1-208ENST00000537004 TSTA3Q13630 321 aaPredicted RBP11.38□□□□□ -0.59
CLIP1-208ENST00000537004 NOXRED1Q6NXP6 359 aa11.38□□□□□ -0.59
CLIP1-208ENST00000537004 SLCO4C1Q6ZQN7 724 aa11.38□□□□□ -0.59
CLIP1-208ENST00000537004 FAM92BQ6ZTR7 304 aa11.38□□□□□ -0.59
CLIP1-208ENST00000537004 AQP12AQ8IXF9 295 aa11.38□□□□□ -0.59
CLIP1-208ENST00000537004 BMPERQ8N8U9 685 aa11.38□□□□□ -0.59
CLIP1-208ENST00000537004 TMEM102Q8N9M5 508 aaPredicted RBP11.38□□□□□ -0.59
CLIP1-208ENST00000537004 AVL9Q8NBF6 648 aa11.38□□□□□ -0.59
CLIP1-208ENST00000537004 PHC3Q8NDX5 983 aa11.38□□□□□ -0.59
CLIP1-208ENST00000537004 GTF2H4Q92759 462 aa11.38□□□□□ -0.59
CLIP1-208ENST00000537004 OR52E6Q96RD3 313 aa11.38□□□□□ -0.59
CLIP1-208ENST00000537004 SGPP1Q9BX95 441 aa11.38□□□□□ -0.59
CLIP1-208ENST00000537004 VPS29Q9UBQ0 182 aa11.38□□□□□ -0.59
CLIP1-208ENST00000537004 ACSL5Q9ULC5 683 aa11.38□□□□□ -0.59
CLIP1-208ENST00000537004 ASF1AQ9Y294 204 aa11.38□□□□□ -0.59
CLIP1-208ENST00000537004 DTNAQ9Y4J8 743 aa11.38□□□□□ -0.59
CLIP1-208ENST00000537004 PCDHGA11Q9Y5H2 935 aa11.38□□□□□ -0.59
CLIP1-208ENST00000537004 ADAMTS20P59510 1910 aa11.38□□□□□ -0.59
CLIP1-208ENST00000537004 PCSK2P16519 638 aa11.38□□□□□ -0.59
CLIP1-208ENST00000537004 NPPBP16860 134 aa11.38□□□□□ -0.59
CLIP1-208ENST00000537004 CAPZBP47756 277 aa11.38□□□□□ -0.59
CLIP1-208ENST00000537004 MTPNP58546 118 aa11.38□□□□□ -0.59
CLIP1-208ENST00000537004 CXADRP78310 365 aa11.38□□□□□ -0.59
CLIP1-208ENST00000537004 TAP2Q03519 686 aa11.38□□□□□ -0.59
CLIP1-208ENST00000537004 E2F2Q14209 437 aa11.38□□□□□ -0.59
CLIP1-208ENST00000537004 SELPLGQ14242 412 aa11.38□□□□□ -0.59
CLIP1-208ENST00000537004 PLCL1Q15111 1095 aa11.38□□□□□ -0.59
CLIP1-208ENST00000537004 AP1ARQ63HQ0 302 aa11.38□□□□□ -0.59
CLIP1-208ENST00000537004 IRGCQ6NXR0 463 aa11.38□□□□□ -0.59
CLIP1-208ENST00000537004 TMPRSS11BQ86T26 416 aa11.38□□□□□ -0.59
CLIP1-208ENST00000537004 PLXDC1Q8IUK5 500 aa11.38□□□□□ -0.59
CLIP1-208ENST00000537004 LRRC56Q8IYG6 542 aaPredicted RBP11.38□□□□□ -0.59
CLIP1-208ENST00000537004 LMNTD1Q8N9Z9 388 aa11.38□□□□□ -0.59
CLIP1-208ENST00000537004 CATSPER1Q8NEC5 780 aa11.38□□□□□ -0.59
CLIP1-208ENST00000537004 OR8J3Q8NGG0 315 aa11.38□□□□□ -0.59
CLIP1-208ENST00000537004 CANT1Q8WVQ1 401 aa11.38□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms