RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 ATP5A1P25705 553 aaKnown RBP12.2□□□□□ -0.46
VPS28-216ENST00000533806 PTX3P26022 381 aaPredicted RBP12.2□□□□□ -0.46
VPS28-216ENST00000533806 CERS1P27544 350 aa12.2□□□□□ -0.46
VPS28-216ENST00000533806 DEKP35659 375 aaKnown RBP12.2□□□□□ -0.46
VPS28-216ENST00000533806 TSFMP43897 325 aaKnown RBP12.2□□□□□ -0.46
VPS28-216ENST00000533806 CCT5P48643 541 aa12.2□□□□□ -0.46
VPS28-216ENST00000533806 CCNG1P51959 295 aa12.2□□□□□ -0.46
VPS28-216ENST00000533806 HNRNPFP52597 415 aaKnown RBP12.2□□□□□ -0.46
VPS28-216ENST00000533806 LIM2P55344 173 aa12.2□□□□□ -0.46
VPS28-216ENST00000533806 EEF1A2Q05639 463 aaKnown RBP12.2□□□□□ -0.46
VPS28-216ENST00000533806 CUL3Q13618 768 aa12.2□□□□□ -0.46
VPS28-216ENST00000533806 RAPSNQ13702 412 aa12.2□□□□□ -0.46
VPS28-216ENST00000533806 ABRAXAS2Q15018 415 aa12.2□□□□□ -0.46
VPS28-216ENST00000533806 NSDHLQ15738 373 aa12.2□□□□□ -0.46
VPS28-216ENST00000533806 CCDC153Q494R4 210 aa12.2□□□□□ -0.46
VPS28-216ENST00000533806 C10orf62Q5T681 223 aaPredicted RBP12.2□□□□□ -0.46
VPS28-216ENST00000533806 VWA5B1Q5TIE3 1220 aa12.2□□□□□ -0.46
VPS28-216ENST00000533806 LETMD1Q6P1Q0 360 aa12.2□□□□□ -0.46
VPS28-216ENST00000533806 ZYG11AQ6WRX3 759 aa12.2□□□□□ -0.46
VPS28-216ENST00000533806 PTRH1Q86Y79 214 aaKnown RBP12.2□□□□□ -0.46
VPS28-216ENST00000533806 HPS6Q86YV9 775 aa12.2□□□□□ -0.46
VPS28-216ENST00000533806 SLC22A9Q8IVM8 553 aa12.2□□□□□ -0.46
VPS28-216ENST00000533806 SCUBE1Q8IWY4 988 aa12.2□□□□□ -0.46
VPS28-216ENST00000533806 PARP9Q8IXQ6 854 aa12.2□□□□□ -0.46
VPS28-216ENST00000533806 IQCKQ8N0W5 287 aa12.2□□□□□ -0.46
VPS28-216ENST00000533806 ACOT4Q8N9L9 421 aa12.2□□□□□ -0.46
VPS28-216ENST00000533806 BANPQ8N9N5 519 aa12.2□□□□□ -0.46
VPS28-216ENST00000533806 TMEM52Q8NDY8 209 aa12.2□□□□□ -0.46
VPS28-216ENST00000533806 MYRIPQ8NFW9 859 aa12.2□□□□□ -0.46
VPS28-216ENST00000533806 OR4F6Q8NGB9 312 aa12.2□□□□□ -0.46
VPS28-216ENST00000533806 METTL21AQ8WXB1 218 aa12.2□□□□□ -0.46
VPS28-216ENST00000533806 TSLPQ969D9 159 aa12.2□□□□□ -0.46
VPS28-216ENST00000533806 REPS1Q96D71 796 aa12.2□□□□□ -0.46
VPS28-216ENST00000533806 TUBB6Q9BUF5 446 aa12.2□□□□□ -0.46
VPS28-216ENST00000533806 ROGDIQ9GZN7 287 aa12.2□□□□□ -0.46
VPS28-216ENST00000533806 C12orf65Q9H3J6 166 aaKnown RBP12.2□□□□□ -0.46
VPS28-216ENST00000533806 ZBTB20Q9HC78 741 aaPredicted RBP12.2□□□□□ -0.46
VPS28-216ENST00000533806 LYRM4Q9HD34 91 aa12.2□□□□□ -0.46
VPS28-216ENST00000533806 SEMA4BQ9NPR2 832 aaPredicted RBP12.2□□□□□ -0.46
VPS28-216ENST00000533806 NECTIN3Q9NQS3 549 aa12.2□□□□□ -0.46
VPS28-216ENST00000533806 RIC8BQ9NVN3 520 aa12.2□□□□□ -0.46
VPS28-216ENST00000533806 ANAPC2Q9UJX6 822 aa12.2□□□□□ -0.46
VPS28-216ENST00000533806 DAPP1Q9UN19 280 aa12.2□□□□□ -0.46
VPS28-216ENST00000533806 ZNF451Q9Y4E5 1061 aa12.2□□□□□ -0.46
VPS28-216ENST00000533806 SCN3AQ9NY46 2000 aa12.2□□□□□ -0.46
VPS28-216ENST00000533806 TENM4Q6N022 2769 aa12.19□□□□□ -0.46
VPS28-216ENST00000533806 A0A088AWK7 358 aa12.19□□□□□ -0.46
VPS28-216ENST00000533806 IGHV3-20A0A0C4DH32 117 aa12.19□□□□□ -0.46
VPS28-216ENST00000533806 TLDC2A0PJX2 215 aa12.19□□□□□ -0.46
VPS28-216ENST00000533806 TGFBR3LH3BV60 316 aa12.19□□□□□ -0.46
VPS28-216ENST00000533806 RTCAO00442 366 aaKnown RBP12.19□□□□□ -0.46
VPS28-216ENST00000533806 B3GALT2O43825 422 aa12.19□□□□□ -0.46
VPS28-216ENST00000533806 KLHL41O60662 606 aa12.19□□□□□ -0.46
VPS28-216ENST00000533806 PRMT3O60678 531 aa12.19□□□□□ -0.46
VPS28-216ENST00000533806 B4GALT2O60909 372 aa12.19□□□□□ -0.46
VPS28-216ENST00000533806 OTCP00480 354 aa12.19□□□□□ -0.46
VPS28-216ENST00000533806 TSPAN8P19075 237 aa12.19□□□□□ -0.46
VPS28-216ENST00000533806 MAOAP21397 527 aa12.19□□□□□ -0.46
VPS28-216ENST00000533806 ZNF10P21506 573 aaPredicted RBP12.19□□□□□ -0.46
VPS28-216ENST00000533806 ITGA3P26006 1051 aa12.19□□□□□ -0.46
VPS28-216ENST00000533806 BSGP35613 385 aa12.19□□□□□ -0.46
VPS28-216ENST00000533806 SOX11P35716 441 aa12.19□□□□□ -0.46
VPS28-216ENST00000533806 CD97P48960 835 aa12.19□□□□□ -0.46
VPS28-216ENST00000533806 RAB38P57729 211 aa12.19□□□□□ -0.46
VPS28-216ENST00000533806 DNAJB13P59910 316 aa12.19□□□□□ -0.46
VPS28-216ENST00000533806 RPS13P62277 151 aaKnown RBP12.19□□□□□ -0.46
VPS28-216ENST00000533806 CLCQ05315 142 aa12.19□□□□□ -0.46
VPS28-216ENST00000533806 TGM3Q08188 693 aa12.19□□□□□ -0.46
VPS28-216ENST00000533806 KLRB1Q12918 225 aa12.19□□□□□ -0.46
VPS28-216ENST00000533806 FRG2Q64ET8 278 aa12.19□□□□□ -0.46
VPS28-216ENST00000533806 PLAG1Q6DJT9 500 aa12.19□□□□□ -0.46
VPS28-216ENST00000533806 OR4C11Q6IEV9 310 aa12.19□□□□□ -0.46
VPS28-216ENST00000533806 RIPOR1Q6ZS17 1223 aa12.19□□□□□ -0.46
VPS28-216ENST00000533806 MILR1Q7Z6M3 343 aa12.19□□□□□ -0.46
VPS28-216ENST00000533806 MYLK4Q86YV6 388 aaPredicted RBP12.19□□□□□ -0.46
VPS28-216ENST00000533806 KBTBD2Q8IY47 623 aa12.19□□□□□ -0.46
VPS28-216ENST00000533806 C4orf33Q8N1A6 199 aa12.19□□□□□ -0.46
VPS28-216ENST00000533806 RBMXL3Q8N7X1 1067 aaKnown RBP12.19□□□□□ -0.46
VPS28-216ENST00000533806 RDH11Q8TC12 318 aa12.19□□□□□ -0.46
VPS28-216ENST00000533806 TRPC4APQ8TEL6 797 aa12.19□□□□□ -0.46
VPS28-216ENST00000533806 ATP6V1E2Q96A05 226 aa12.19□□□□□ -0.46
VPS28-216ENST00000533806 RGMAQ96B86 450 aa12.19□□□□□ -0.46
VPS28-216ENST00000533806 THOC3Q96J01 351 aaKnown RBP12.19□□□□□ -0.46
VPS28-216ENST00000533806 FRG2BQ96QU4 278 aa12.19□□□□□ -0.46
VPS28-216ENST00000533806 ZNF382Q96SR6 550 aa12.19□□□□□ -0.46
VPS28-216ENST00000533806 GSTO2Q9H4Y5 243 aa12.19□□□□□ -0.46
VPS28-216ENST00000533806 PRDM9Q9NQV7 894 aa12.19□□□□□ -0.46
VPS28-216ENST00000533806 C19orf25Q9UFG5 118 aaPredicted RBP12.19□□□□□ -0.46
VPS28-216ENST00000533806 PLAAQ9Y263 795 aa12.19□□□□□ -0.46
VPS28-216ENST00000533806 MMACHCQ9Y4U1 282 aa12.19□□□□□ -0.46
VPS28-216ENST00000533806 UBR5O95071 2799 aaPredicted RBP12.18□□□□□ -0.46
VPS28-216ENST00000533806 SAP18O00422 153 aaKnown RBP12.18□□□□□ -0.46
VPS28-216ENST00000533806 UBFD1O14562 309 aaKnown RBP12.18□□□□□ -0.46
VPS28-216ENST00000533806 COPEO14579 308 aa12.18□□□□□ -0.46
VPS28-216ENST00000533806 SH3BGRLO75368 114 aa12.18□□□□□ -0.46
VPS28-216ENST00000533806 SEC24DO94855 1032 aaPredicted RBP12.18□□□□□ -0.46
VPS28-216ENST00000533806 SUPT7LO94864 414 aa12.18□□□□□ -0.46
VPS28-216ENST00000533806 CELA2AP08217 269 aa12.18□□□□□ -0.46
VPS28-216ENST00000533806 ICAM2P13598 275 aa12.18□□□□□ -0.46
VPS28-216ENST00000533806 CASRP41180 1078 aa12.18□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms