RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-208ENST00000532560 NUDT9Q9BW91 350 aa14.17□□□□□ -0.14
CPSF1-208ENST00000532560 ZNF700Q9H0M5 742 aa14.17□□□□□ -0.14
CPSF1-208ENST00000532560 COPS7BQ9H9Q2 264 aaPredicted RBP14.17□□□□□ -0.14
CPSF1-208ENST00000532560 SEMA4BQ9NPR2 832 aaPredicted RBP14.17□□□□□ -0.14
CPSF1-208ENST00000532560 ZNF71Q9NQZ8 489 aaPredicted RBP14.17□□□□□ -0.14
CPSF1-208ENST00000532560 RIC8BQ9NVN3 520 aa14.17□□□□□ -0.14
CPSF1-208ENST00000532560 MKS1Q9NXB0 559 aa14.17□□□□□ -0.14
CPSF1-208ENST00000532560 C19orf25Q9UFG5 118 aaPredicted RBP14.17□□□□□ -0.14
CPSF1-208ENST00000532560 GRID1Q9ULK0 1009 aa14.17□□□□□ -0.14
CPSF1-208ENST00000532560 PPT2Q9UMR5 302 aa14.17□□□□□ -0.14
CPSF1-208ENST00000532560 PLAAQ9Y263 795 aa14.17□□□□□ -0.14
CPSF1-208ENST00000532560 ZNF451Q9Y4E5 1061 aa14.17□□□□□ -0.14
CPSF1-208ENST00000532560 SPTA1P02549 2419 aa14.17□□□□□ -0.14
CPSF1-208ENST00000532560 TLDC2A0PJX2 215 aa14.16□□□□□ -0.14
CPSF1-208ENST00000532560 MAGEB17A8MXT2 336 aa14.16□□□□□ -0.14
CPSF1-208ENST00000532560 B8ZZF3 427 aa14.16□□□□□ -0.14
CPSF1-208ENST00000532560 G3V2L1 256 aa14.16□□□□□ -0.14
CPSF1-208ENST00000532560 FOXE1O00358 373 aaPredicted RBP14.16□□□□□ -0.14
CPSF1-208ENST00000532560 COPEO14579 308 aa14.16□□□□□ -0.14
CPSF1-208ENST00000532560 PLIN3O60664 434 aa14.16□□□□□ -0.14
CPSF1-208ENST00000532560 SCELO95171 688 aa14.16□□□□□ -0.14
CPSF1-208ENST00000532560 TGFB1P01137 390 aa14.16□□□□□ -0.14
CPSF1-208ENST00000532560 NR1D1P20393 614 aa14.16□□□□□ -0.14
CPSF1-208ENST00000532560 CERS1P27544 350 aa14.16□□□□□ -0.14
CPSF1-208ENST00000532560 ARL1P40616 181 aaPredicted RBP14.16□□□□□ -0.14
CPSF1-208ENST00000532560 ARFIP1P53367 373 aa14.16□□□□□ -0.14
CPSF1-208ENST00000532560 PRKAA2P54646 552 aa14.16□□□□□ -0.14
CPSF1-208ENST00000532560 HNRNPH2P55795 449 aaKnown RBP14.16□□□□□ -0.14
CPSF1-208ENST00000532560 RAB38P57729 211 aa14.16□□□□□ -0.14
CPSF1-208ENST00000532560 DDX39BQ13838 428 aaKnown RBP14.16□□□□□ -0.14
CPSF1-208ENST00000532560 ABRAXAS2Q15018 415 aa14.16□□□□□ -0.14
CPSF1-208ENST00000532560 ZRSR2Q15696 482 aaKnown RBP14.16□□□□□ -0.14
CPSF1-208ENST00000532560 DEPDC1Q5TB30 811 aa14.16□□□□□ -0.14
CPSF1-208ENST00000532560 ZYG11AQ6WRX3 759 aa14.16□□□□□ -0.14
CPSF1-208ENST00000532560 LANCL3Q6ZV70 420 aa14.16□□□□□ -0.14
CPSF1-208ENST00000532560 RPS27LQ71UM5 84 aaKnown RBP14.16□□□□□ -0.14
CPSF1-208ENST00000532560 UBE3DQ7Z6J8 389 aa14.16□□□□□ -0.14
CPSF1-208ENST00000532560 TRABD2AQ86V40 505 aa14.16□□□□□ -0.14
CPSF1-208ENST00000532560 HPS6Q86YV9 775 aa14.16□□□□□ -0.14
CPSF1-208ENST00000532560 RDH11Q8TC12 318 aa14.16□□□□□ -0.14
CPSF1-208ENST00000532560 CCDC126Q96EE4 140 aa14.16□□□□□ -0.14
CPSF1-208ENST00000532560 MTERF1Q99551 399 aaKnown RBP14.16□□□□□ -0.14
CPSF1-208ENST00000532560 CENPKQ9BS16 269 aa14.16□□□□□ -0.14
CPSF1-208ENST00000532560 FAM107BQ9H098 131 aa14.16□□□□□ -0.14
CPSF1-208ENST00000532560 ZNF160Q9HCG1 818 aa14.16□□□□□ -0.14
CPSF1-208ENST00000532560 PRM3Q9NNZ6 103 aa14.16□□□□□ -0.14
CPSF1-208ENST00000532560 PRDM7Q9NQW5 492 aa14.16□□□□□ -0.14
CPSF1-208ENST00000532560 BOD1L1Q8NFC6 3051 aa14.16□□□□□ -0.14
CPSF1-208ENST00000532560 OR2W5A6NFC9 320 aa14.15□□□□□ -0.14
CPSF1-208ENST00000532560 GOLGA6L10A6NI86 522 aa14.15□□□□□ -0.14
CPSF1-208ENST00000532560 HMGB1P1B2RPK0 211 aaPredicted RBP14.15□□□□□ -0.14
CPSF1-208ENST00000532560 SUPT7LO94864 414 aa14.15□□□□□ -0.14
CPSF1-208ENST00000532560 ALPPP05187 535 aa14.15□□□□□ -0.14
CPSF1-208ENST00000532560 MYL2P10916 166 aa14.15□□□□□ -0.14
CPSF1-208ENST00000532560 IMPDH1P20839 514 aa14.15□□□□□ -0.14
CPSF1-208ENST00000532560 HIST1H1TP22492 207 aaPredicted RBP14.15□□□□□ -0.14
CPSF1-208ENST00000532560 ITGA3P26006 1051 aa14.15□□□□□ -0.14
CPSF1-208ENST00000532560 TSFMP43897 325 aaKnown RBP14.15□□□□□ -0.14
CPSF1-208ENST00000532560 CDH13P55290 713 aa14.15□□□□□ -0.14
CPSF1-208ENST00000532560 NAA20P61599 178 aa14.15□□□□□ -0.14
CPSF1-208ENST00000532560 RPS13P62277 151 aaKnown RBP14.15□□□□□ -0.14
CPSF1-208ENST00000532560 CLCQ05315 142 aa14.15□□□□□ -0.14
CPSF1-208ENST00000532560 Q0VFX4 171 aa14.15□□□□□ -0.14
CPSF1-208ENST00000532560 RUNX2Q13950 521 aa14.15□□□□□ -0.14
CPSF1-208ENST00000532560 RCN2Q14257 317 aa14.15□□□□□ -0.14
CPSF1-208ENST00000532560 UNC50Q53HI1 259 aa14.15□□□□□ -0.14
CPSF1-208ENST00000532560 IRAK1BP1Q5VVH5 260 aa14.15□□□□□ -0.14
CPSF1-208ENST00000532560 FRG2Q64ET8 278 aa14.15□□□□□ -0.14
CPSF1-208ENST00000532560 LETMD1Q6P1Q0 360 aa14.15□□□□□ -0.14
CPSF1-208ENST00000532560 ZNF793Q6ZN11 406 aa14.15□□□□□ -0.14
CPSF1-208ENST00000532560 CPEB2Q7Z5Q1 589 aaKnown RBP14.15□□□□□ -0.14
CPSF1-208ENST00000532560 MILR1Q7Z6M3 343 aa14.15□□□□□ -0.14
CPSF1-208ENST00000532560 ANKRD37Q7Z713 158 aa14.15□□□□□ -0.14
CPSF1-208ENST00000532560 CROCCP2Q86T23 111 aa14.15□□□□□ -0.14
CPSF1-208ENST00000532560 C4orf33Q8N1A6 199 aa14.15□□□□□ -0.14
CPSF1-208ENST00000532560 RNF175Q8N4F7 328 aa14.15□□□□□ -0.14
CPSF1-208ENST00000532560 ARFGAP2Q8N6H7 521 aa14.15□□□□□ -0.14
CPSF1-208ENST00000532560 OR4F6Q8NGB9 312 aa14.15□□□□□ -0.14
CPSF1-208ENST00000532560 PPP4R1Q8TF05 950 aa14.15□□□□□ -0.14
CPSF1-208ENST00000532560 TSLPQ969D9 159 aa14.15□□□□□ -0.14
CPSF1-208ENST00000532560 APOPT1Q96IL0 206 aa14.15□□□□□ -0.14
CPSF1-208ENST00000532560 FRG2BQ96QU4 278 aa14.15□□□□□ -0.14
CPSF1-208ENST00000532560 ZNF382Q96SR6 550 aa14.15□□□□□ -0.14
CPSF1-208ENST00000532560 TUBB6Q9BUF5 446 aa14.15□□□□□ -0.14
CPSF1-208ENST00000532560 LHPPQ9H008 270 aa14.15□□□□□ -0.14
CPSF1-208ENST00000532560 OR51B5Q9H339 312 aa14.15□□□□□ -0.14
CPSF1-208ENST00000532560 ZNF552Q9H707 407 aaPredicted RBP14.15□□□□□ -0.14
CPSF1-208ENST00000532560 LYRM4Q9HD34 91 aa14.15□□□□□ -0.14
CPSF1-208ENST00000532560 PRDM9Q9NQV7 894 aa14.15□□□□□ -0.14
CPSF1-208ENST00000532560 C5AR2Q9P296 337 aa14.15□□□□□ -0.14
CPSF1-208ENST00000532560 TRPS1Q9UHF7 1281 aa14.15□□□□□ -0.14
CPSF1-208ENST00000532560 DAPP1Q9UN19 280 aa14.15□□□□□ -0.14
CPSF1-208ENST00000532560 STK38LQ9Y2H1 464 aa14.15□□□□□ -0.14
CPSF1-208ENST00000532560 MMACHCQ9Y4U1 282 aa14.15□□□□□ -0.14
CPSF1-208ENST00000532560 BSNQ9UPA5 3926 aa14.14□□□□□ -0.15
CPSF1-208ENST00000532560 IGKV3D-11A0A0A0MRZ8 115 aa14.14□□□□□ -0.15
CPSF1-208ENST00000532560 A0A1B0GTL3 188 aa14.14□□□□□ -0.15
CPSF1-208ENST00000532560 RTCAO00442 366 aaKnown RBP14.14□□□□□ -0.15
CPSF1-208ENST00000532560 PRMT3O60678 531 aa14.14□□□□□ -0.15
CPSF1-208ENST00000532560 B4GALT2O60909 372 aa14.14□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms