RNA–Protein interactions for RNA: ENST00000530983.5

VPS28-213, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,337 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-213ENST00000530983 SAGE2PA6NJ88 616 aa18.43■□□□□ 0.54
VPS28-213ENST00000530983 GPR37L1O60883 481 aa18.43■□□□□ 0.54
VPS28-213ENST00000530983 ITGA2P17301 1181 aa18.43■□□□□ 0.54
VPS28-213ENST00000530983 SERPINB1P30740 379 aa18.43■□□□□ 0.54
VPS28-213ENST00000530983 SEPHS1P49903 392 aa18.43■□□□□ 0.54
VPS28-213ENST00000530983 SLBPQ14493 270 aaKnown RBP eCLIP18.43■□□□□ 0.54
VPS28-213ENST00000530983 EIF4HQ15056 248 aaKnown RBP18.43■□□□□ 0.54
VPS28-213ENST00000530983 CRB2Q5IJ48 1285 aa18.43■□□□□ 0.54
VPS28-213ENST00000530983 PHF6Q8IWS0 365 aaKnown RBP eCLIP18.43■□□□□ 0.54
VPS28-213ENST00000530983 SYTL1Q8IYJ3 562 aa18.43■□□□□ 0.54
VPS28-213ENST00000530983 OXR1Q8N573 874 aa18.43■□□□□ 0.54
VPS28-213ENST00000530983 Q8N9G6 341 aaPredicted RBP18.43■□□□□ 0.54
VPS28-213ENST00000530983 B3GNT7Q8NFL0 401 aa18.43■□□□□ 0.54
VPS28-213ENST00000530983 HTRA1Q92743 480 aa18.43■□□□□ 0.54
VPS28-213ENST00000530983 REPS1Q96D71 796 aa18.43■□□□□ 0.54
VPS28-213ENST00000530983 CAPNS2Q96L46 248 aa18.43■□□□□ 0.54
VPS28-213ENST00000530983 FOPNLQ96NB1 174 aa18.43■□□□□ 0.54
VPS28-213ENST00000530983 FAM129BQ96TA1 746 aa18.43■□□□□ 0.54
VPS28-213ENST00000530983 PIP5K1AQ99755 562 aa18.43■□□□□ 0.54
VPS28-213ENST00000530983 OR51B5Q9H339 312 aa18.43■□□□□ 0.54
VPS28-213ENST00000530983 MTG2Q9H4K7 406 aa18.43■□□□□ 0.54
VPS28-213ENST00000530983 DMRT3Q9NQL9 472 aa18.43■□□□□ 0.54
VPS28-213ENST00000530983 IMPAD1Q9NX62 359 aa18.43■□□□□ 0.54
VPS28-213ENST00000530983 CCDC59Q9P031 241 aaKnown RBP18.43■□□□□ 0.54
VPS28-213ENST00000530983 MTCL1Q9Y4B5 1905 aaKnown RBP18.43■□□□□ 0.54
VPS28-213ENST00000530983 FOXE1O00358 373 aaPredicted RBP18.43■□□□□ 0.54
VPS28-213ENST00000530983 C1orf105O95561 183 aa18.43■□□□□ 0.54
VPS28-213ENST00000530983 TGFB1P01137 390 aa18.43■□□□□ 0.54
VPS28-213ENST00000530983 ADRA2AP08913 450 aa18.43■□□□□ 0.54
VPS28-213ENST00000530983 PTPN2P17706 415 aa18.43■□□□□ 0.54
VPS28-213ENST00000530983 NKX2-5P52952 324 aaPredicted RBP18.43■□□□□ 0.54
VPS28-213ENST00000530983 PNLIPRP1P54315 467 aa18.43■□□□□ 0.54
VPS28-213ENST00000530983 IFITM2Q01629 132 aa18.43■□□□□ 0.54
VPS28-213ENST00000530983 POM121L1PQ3SYA9 428 aa18.43■□□□□ 0.54
VPS28-213ENST00000530983 IER5LQ5T953 404 aa18.43■□□□□ 0.54
VPS28-213ENST00000530983 TMEM220Q6QAJ8 160 aa18.43■□□□□ 0.54
VPS28-213ENST00000530983 FAM83FQ8NEG4 500 aaPredicted RBP18.43■□□□□ 0.54
VPS28-213ENST00000530983 KBTBD8Q8NFY9 601 aa18.43■□□□□ 0.54
VPS28-213ENST00000530983 GEMIN6Q8WXD5 167 aaKnown RBP18.43■□□□□ 0.54
VPS28-213ENST00000530983 PPCDCQ96CD2 204 aa18.43■□□□□ 0.54
VPS28-213ENST00000530983 QPCTLQ9NXS2 382 aa18.43■□□□□ 0.54
VPS28-213ENST00000530983 DUSP12Q9UNI6 340 aa18.43■□□□□ 0.54
VPS28-213ENST00000530983 IFT52Q9Y366 437 aa18.43■□□□□ 0.54
VPS28-213ENST00000530983 TSPAN11A1L157 253 aa18.42■□□□□ 0.54
VPS28-213ENST00000530983 PSMD11O00231 422 aa18.42■□□□□ 0.54
VPS28-213ENST00000530983 TYRP14679 529 aa18.42■□□□□ 0.54
VPS28-213ENST00000530983 PCBP3P57721 371 aaKnown RBP18.42■□□□□ 0.54
VPS28-213ENST00000530983 C2orf80Q0P641 193 aa18.42■□□□□ 0.54
VPS28-213ENST00000530983 TSTA3Q13630 321 aaPredicted RBP18.42■□□□□ 0.54
VPS28-213ENST00000530983 PTGES3Q15185 160 aaKnown RBP18.42■□□□□ 0.54
VPS28-213ENST00000530983 ZNF658BQ4V348 819 aaPredicted RBP18.42■□□□□ 0.54
VPS28-213ENST00000530983 TRIM40Q6P9F5 258 aa18.42■□□□□ 0.54
VPS28-213ENST00000530983 LAS2Q8IYD9 372 aa18.42■□□□□ 0.54
VPS28-213ENST00000530983 PARP16Q8N5Y8 322 aa18.42■□□□□ 0.54
VPS28-213ENST00000530983 C16orf78Q8WTQ4 265 aa18.42■□□□□ 0.54
VPS28-213ENST00000530983 CYB5D2Q8WUJ1 264 aa18.42■□□□□ 0.54
VPS28-213ENST00000530983 GTPBP3Q969Y2 492 aaKnown RBP18.42■□□□□ 0.54
VPS28-213ENST00000530983 WDR34Q96EX3 536 aa18.42■□□□□ 0.54
VPS28-213ENST00000530983 CHCHD6Q9BRQ6 235 aa18.42■□□□□ 0.54
VPS28-213ENST00000530983 ZNF556Q9HAH1 456 aa18.42■□□□□ 0.54
VPS28-213ENST00000530983 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP18.42■□□□□ 0.545e-6■□□□□ 10.2
VPS28-213ENST00000530983 MKI67P46013 3256 aaKnown RBP18.42■□□□□ 0.54
VPS28-213ENST00000530983 PIPSLA2A3N6 862 aa18.41■□□□□ 0.54
VPS28-213ENST00000530983 H3BM21 787 aa18.41■□□□□ 0.54
VPS28-213ENST00000530983 RECKO95980 971 aa18.41■□□□□ 0.54
VPS28-213ENST00000530983 C8AP07357 584 aa18.41■□□□□ 0.54
VPS28-213ENST00000530983 SRPRAP08240 638 aaKnown RBP18.41■□□□□ 0.54
VPS28-213ENST00000530983 LAG3P18627 525 aa18.41■□□□□ 0.54
VPS28-213ENST00000530983 CBLP22681 906 aa18.41■□□□□ 0.54
VPS28-213ENST00000530983 HMGA2P52926 109 aa18.41■□□□□ 0.54
VPS28-213ENST00000530983 TAS2R50P59544 299 aa18.41■□□□□ 0.54
VPS28-213ENST00000530983 GANABQ14697 944 aaKnown RBP18.41■□□□□ 0.54
VPS28-213ENST00000530983 ZNF630Q2M218 657 aaPredicted RBP18.41■□□□□ 0.54
VPS28-213ENST00000530983 FAM71E1Q6IPT2 247 aa18.41■□□□□ 0.54
VPS28-213ENST00000530983 PNCKQ6P2M8 343 aa18.41■□□□□ 0.54
VPS28-213ENST00000530983 NLGN4XQ8N0W4 816 aa18.41■□□□□ 0.54
VPS28-213ENST00000530983 POC5Q8NA72 575 aa18.41■□□□□ 0.54
VPS28-213ENST00000530983 Q96MT0 163 aa18.41■□□□□ 0.54
VPS28-213ENST00000530983 WRAP53Q9BUR4 548 aaKnown RBP18.41■□□□□ 0.54
VPS28-213ENST00000530983 HOXD1Q9GZZ0 328 aa18.41■□□□□ 0.54
VPS28-213ENST00000530983 SPNS1Q9H2V7 528 aa18.41■□□□□ 0.54
VPS28-213ENST00000530983 TAS2R9Q9NYW1 312 aa18.41■□□□□ 0.54
VPS28-213ENST00000530983 HCN4Q9Y3Q4 1203 aa18.41■□□□□ 0.54
VPS28-213ENST00000530983 ZNF197O14709 1029 aa18.41■□□□□ 0.54
VPS28-213ENST00000530983 HSMCR30P0CW71 290 aa18.41■□□□□ 0.54
VPS28-213ENST00000530983 CHI3L1P36222 383 aaPredicted RBP18.41■□□□□ 0.54
VPS28-213ENST00000530983 MAPK9P45984 424 aa18.41■□□□□ 0.54
VPS28-213ENST00000530983 MEF2AQ02078 507 aaPredicted RBP18.41■□□□□ 0.54
VPS28-213ENST00000530983 PRKCDQ05655 676 aa18.41■□□□□ 0.54
VPS28-213ENST00000530983 ARHGEF6Q15052 776 aa18.41■□□□□ 0.54
VPS28-213ENST00000530983 CNKSR3Q6P9H4 555 aa18.41■□□□□ 0.54
VPS28-213ENST00000530983 DPPA4Q7L190 304 aa18.41■□□□□ 0.54
VPS28-213ENST00000530983 AKAP14Q86UN6 197 aa18.41■□□□□ 0.54
VPS28-213ENST00000530983 AP2M1Q96CW1 435 aa18.41■□□□□ 0.54
VPS28-213ENST00000530983 CRELD1Q96HD1 420 aa18.41■□□□□ 0.54
VPS28-213ENST00000530983 TXNDC15Q96J42 360 aa18.41■□□□□ 0.54
VPS28-213ENST00000530983 MRGPRX3Q96LB0 322 aa18.41■□□□□ 0.54
VPS28-213ENST00000530983 EFCAB11Q9BUY7 163 aa18.41■□□□□ 0.54
VPS28-213ENST00000530983 MYNNQ9NPC7 610 aa18.41■□□□□ 0.54
VPS28-213ENST00000530983 HCFC1R1Q9NWW0 138 aa18.41■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms