RNA–Protein interactions for RNA: ENST00000526025.1

CD44-222, Transcript of CD44 molecule (Indian blood group), human

TSL 2 BASIC

Gene CD44, Length 1,052 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-222	ENST00000526025	SRRM3	A6NNA2	597 aa	Predicted RBP	19.61	■□□□□ 0.73
CD44-222	ENST00000526025	EFS	O43281	561 aa		19.61	■□□□□ 0.73
CD44-222	ENST00000526025	CHST10	O43529	356 aa		19.61	■□□□□ 0.73
CD44-222	ENST00000526025	SNN	O75324	88 aa	Predicted RBP	19.61	■□□□□ 0.73
CD44-222	ENST00000526025	BMP10	O95393	424 aa		19.61	■□□□□ 0.73
CD44-222	ENST00000526025	IGHE	P01854	428 aa		19.61	■□□□□ 0.73
CD44-222	ENST00000526025	RNH1	P13489	461 aa	Known RBP	19.61	■□□□□ 0.73
CD44-222	ENST00000526025	BSG	P35613	385 aa		19.61	■□□□□ 0.73
CD44-222	ENST00000526025	FOLR3	P41439	243 aa		19.61	■□□□□ 0.73
CD44-222	ENST00000526025	SSR2	P43308	183 aa		19.61	■□□□□ 0.73
CD44-222	ENST00000526025	MAT1A	Q00266	395 aa	Known RBP	19.61	■□□□□ 0.73
CD44-222	ENST00000526025	BST1	Q10588	318 aa		19.61	■□□□□ 0.73
CD44-222	ENST00000526025	UGT3A2	Q3SY77	523 aa		19.61	■□□□□ 0.73
CD44-222	ENST00000526025	SH2D4B	Q5SQS7	431 aa		19.61	■□□□□ 0.73
CD44-222	ENST00000526025	ZNF793	Q6ZN11	406 aa		19.61	■□□□□ 0.73
CD44-222	ENST00000526025	CCDC81	Q6ZN84	652 aa		19.61	■□□□□ 0.73
CD44-222	ENST00000526025	ATG14	Q6ZNE5	492 aa		19.61	■□□□□ 0.73
CD44-222	ENST00000526025	PAGE2	Q7Z2X7	111 aa		19.61	■□□□□ 0.73
CD44-222	ENST00000526025	NUDT13	Q86X67	352 aa		19.61	■□□□□ 0.73
CD44-222	ENST00000526025	CA13	Q8N1Q1	262 aa		19.61	■□□□□ 0.73
CD44-222	ENST00000526025	METTL4	Q8N3J2	472 aa		19.61	■□□□□ 0.73
CD44-222	ENST00000526025	ACOT4	Q8N9L9	421 aa		19.61	■□□□□ 0.73
CD44-222	ENST00000526025	ACPT	Q9BZG2	426 aa		19.61	■□□□□ 0.73
CD44-222	ENST00000526025	SHCBP1L	Q9BZQ2	653 aa		19.61	■□□□□ 0.73
CD44-222	ENST00000526025	ILKAP	Q9H0C8	392 aa	Predicted RBP	19.61	■□□□□ 0.73
CD44-222	ENST00000526025	MANSC1	Q9H8J5	431 aa		19.61	■□□□□ 0.73
CD44-222	ENST00000526025	THAP1	Q9NVV9	213 aa		19.61	■□□□□ 0.73
CD44-222	ENST00000526025	SIRT5	Q9NXA8	310 aa		19.61	■□□□□ 0.73
CD44-222	ENST00000526025	HCN3	Q9P1Z3	774 aa		19.61	■□□□□ 0.73
CD44-222	ENST00000526025	SLC12A4	Q9UP95	1085 aa		19.61	■□□□□ 0.73
CD44-222	ENST00000526025	PTRH2	Q9Y3E5	179 aa	Known RBP	19.61	■□□□□ 0.73
CD44-222	ENST00000526025	PKD1L2	Q7Z442	2459 aa		19.6	■□□□□ 0.73
CD44-222	ENST00000526025	BLACE	A4D250	179 aa		19.6	■□□□□ 0.73
CD44-222	ENST00000526025	ZNF860	A6NHJ4	632 aa		19.6	■□□□□ 0.73
CD44-222	ENST00000526025		K7ENP7	123 aa		19.6	■□□□□ 0.73
CD44-222	ENST00000526025	B3GALT4	O96024	378 aa		19.6	■□□□□ 0.73
CD44-222	ENST00000526025	CHN1	P15882	459 aa		19.6	■□□□□ 0.73
CD44-222	ENST00000526025	JAK1	P23458	1154 aa		19.6	■□□□□ 0.73
CD44-222	ENST00000526025	PRPH2	P23942	346 aa		19.6	■□□□□ 0.73
CD44-222	ENST00000526025	CERS1	P27544	350 aa		19.6	■□□□□ 0.73
CD44-222	ENST00000526025	XCR1	P46094	333 aa		19.6	■□□□□ 0.73
CD44-222	ENST00000526025	TBL3	Q12788	808 aa	Known RBP	19.6	■□□□□ 0.73
CD44-222	ENST00000526025	SRSF6	Q13247	344 aa	Known RBP	19.6	■□□□□ 0.73
CD44-222	ENST00000526025	COL9A2	Q14055	689 aa	Predicted RBP	19.6	■□□□□ 0.73
CD44-222	ENST00000526025	SSPN	Q14714	243 aa		19.6	■□□□□ 0.73
CD44-222	ENST00000526025	UGT8	Q16880	541 aa		19.6	■□□□□ 0.73
CD44-222	ENST00000526025	SYT16	Q17RD7	645 aa		19.6	■□□□□ 0.73
CD44-222	ENST00000526025	TUBB8	Q3ZCM7	444 aa		19.6	■□□□□ 0.73
CD44-222	ENST00000526025	CLEC6A	Q6EIG7	209 aa		19.6	■□□□□ 0.73
CD44-222	ENST00000526025	INO80C	Q6PI98	192 aa	Predicted RBP	19.6	■□□□□ 0.73
CD44-222	ENST00000526025	OR5T3	Q8NGG3	340 aa		19.6	■□□□□ 0.73
CD44-222	ENST00000526025	TBC1D20	Q96BZ9	403 aa		19.6	■□□□□ 0.73
CD44-222	ENST00000526025	SORT1	Q99523	831 aa		19.6	■□□□□ 0.73
CD44-222	ENST00000526025	SEMA3G	Q9NS98	782 aa		19.6	■□□□□ 0.73
CD44-222	ENST00000526025	INTS9	Q9NV88	658 aa	Known RBP	19.6	■□□□□ 0.73
CD44-222	ENST00000526025	ZDHHC2	Q9UIJ5	367 aa		19.6	■□□□□ 0.73
CD44-222	ENST00000526025	DAPP1	Q9UN19	280 aa		19.6	■□□□□ 0.73
CD44-222	ENST00000526025	DNAJC15	Q9Y5T4	150 aa		19.6	■□□□□ 0.73
CD44-222	ENST00000526025	SCN2A	Q99250	2005 aa		19.59	■□□□□ 0.73
CD44-222	ENST00000526025		A0A0A6YYD5	115 aa		19.59	■□□□□ 0.73
CD44-222	ENST00000526025		A0A0G2JN53	185 aa		19.59	■□□□□ 0.73
CD44-222	ENST00000526025	SLC28A1	O00337	649 aa		19.59	■□□□□ 0.73
CD44-222	ENST00000526025	SAP18	O00422	153 aa	Known RBP	19.59	■□□□□ 0.73
CD44-222	ENST00000526025	ITM2A	O43736	263 aa		19.59	■□□□□ 0.73
CD44-222	ENST00000526025	LYPLA1	O75608	230 aa	Predicted RBP	19.59	■□□□□ 0.73
CD44-222	ENST00000526025	RSL1D1	O76021	490 aa	Known RBP	19.59	■□□□□ 0.73
CD44-222	ENST00000526025	FH	P07954	510 aa		19.59	■□□□□ 0.73
CD44-222	ENST00000526025	WT1	P19544	449 aa	Predicted RBP	19.59	■□□□□ 0.73
CD44-222	ENST00000526025	ITPKB	P27987	946 aa		19.59	■□□□□ 0.73
CD44-222	ENST00000526025	SERPINB3	P29508	390 aa		19.59	■□□□□ 0.73
CD44-222	ENST00000526025	LIM2	P55344	173 aa		19.59	■□□□□ 0.73
CD44-222	ENST00000526025	RAB38	P57729	211 aa		19.59	■□□□□ 0.73
CD44-222	ENST00000526025	KLC1	Q07866	573 aa		19.59	■□□□□ 0.73
CD44-222	ENST00000526025	RUNX2	Q13950	521 aa		19.59	■□□□□ 0.73
CD44-222	ENST00000526025	SPIN4	Q56A73	249 aa		19.59	■□□□□ 0.73
CD44-222	ENST00000526025	VWA2	Q5GFL6	755 aa		19.59	■□□□□ 0.73
CD44-222	ENST00000526025	MRM1	Q6IN84	353 aa	Known RBP	19.59	■□□□□ 0.73
CD44-222	ENST00000526025	ARFGAP2	Q8N6H7	521 aa		19.59	■□□□□ 0.73
CD44-222	ENST00000526025	ADAMTS17	Q8TE56	1095 aa		19.59	■□□□□ 0.73
CD44-222	ENST00000526025	TWIST2	Q8WVJ9	160 aa		19.59	■□□□□ 0.73
CD44-222	ENST00000526025	IP6K3	Q96PC2	410 aa		19.59	■□□□□ 0.73
CD44-222	ENST00000526025	YIPF2	Q9BWQ6	316 aa		19.59	■□□□□ 0.73
CD44-222	ENST00000526025	C20orf27	Q9GZN8	174 aa		19.59	■□□□□ 0.73
CD44-222	ENST00000526025	PFDN4	Q9NQP4	134 aa		19.59	■□□□□ 0.73
CD44-222	ENST00000526025	LYAR	Q9NX58	379 aa	Known RBP	19.59	■□□□□ 0.73
CD44-222	ENST00000526025	MS4A12	Q9NXJ0	267 aa		19.59	■□□□□ 0.73
CD44-222	ENST00000526025	MRPS18B	Q9Y676	258 aa	Known RBP	19.59	■□□□□ 0.73
CD44-222	ENST00000526025	SPACA6	W5XKT8	324 aa		19.59	■□□□□ 0.73
CD44-222	ENST00000526025	SYNDIG1L	A6NDD5	238 aa		19.58	■□□□□ 0.72
CD44-222	ENST00000526025	PSMD12	O00232	456 aa	Predicted RBP	19.58	■□□□□ 0.72
CD44-222	ENST00000526025	RTCA	O00442	366 aa	Known RBP	19.58	■□□□□ 0.72
CD44-222	ENST00000526025	SH3BGRL	O75368	114 aa		19.58	■□□□□ 0.72
CD44-222	ENST00000526025	UMOD	P07911	640 aa		19.58	■□□□□ 0.72
CD44-222	ENST00000526025	RPS18	P62269	152 aa	Known RBP	19.58	■□□□□ 0.72
CD44-222	ENST00000526025	VAC14	Q08AM6	782 aa		19.58	■□□□□ 0.72
CD44-222	ENST00000526025	GALNT18	Q6P9A2	607 aa		19.58	■□□□□ 0.72
CD44-222	ENST00000526025	COMMD6	Q7Z4G1	85 aa		19.58	■□□□□ 0.72
CD44-222	ENST00000526025	RAB43	Q86YS6	212 aa		19.58	■□□□□ 0.72
CD44-222	ENST00000526025	CHTF18	Q8WVB6	975 aa		19.58	■□□□□ 0.72
CD44-222	ENST00000526025	C11orf24	Q96F05	449 aa	Predicted RBP	19.58	■□□□□ 0.72

Retrieved 100 of 20,778 RNA–protein pairs in 74.2 ms