RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 CDKL4Q5MAI5 379 aa8.08□□□□□ -1.12
LIMCH1-216ENST00000512820 SBSNQ6UWP8 590 aa8.08□□□□□ -1.12
LIMCH1-216ENST00000512820 CBLL1Q75N03 491 aa8.08□□□□□ -1.12
LIMCH1-216ENST00000512820 IQCHQ86VS3 1027 aa8.08□□□□□ -1.12
LIMCH1-216ENST00000512820 FAM98AQ8NCA5 519 aaKnown RBP8.08□□□□□ -1.12
LIMCH1-216ENST00000512820 KREMEN2Q8NCW0 462 aa8.08□□□□□ -1.12
LIMCH1-216ENST00000512820 GPR26Q8NDV2 337 aa8.08□□□□□ -1.12
LIMCH1-216ENST00000512820 SRFBP1Q8NEF9 429 aaKnown RBP8.08□□□□□ -1.12
LIMCH1-216ENST00000512820 TESCQ96BS2 214 aa8.08□□□□□ -1.12
LIMCH1-216ENST00000512820 TBX5Q99593 518 aa8.08□□□□□ -1.12
LIMCH1-216ENST00000512820 BEX2Q9BXY8 128 aa8.08□□□□□ -1.12
LIMCH1-216ENST00000512820 AMBRA1Q9C0C7 1298 aa8.08□□□□□ -1.12
LIMCH1-216ENST00000512820 BHLHE41Q9C0J9 482 aaPredicted RBP8.08□□□□□ -1.12
LIMCH1-216ENST00000512820 IRF2BPLQ9H1B7 796 aa8.08□□□□□ -1.12
LIMCH1-216ENST00000512820 DEC1Q9P2X7 70 aa8.08□□□□□ -1.12
LIMCH1-216ENST00000512820 PHF11Q9UIL8 331 aa8.08□□□□□ -1.12
LIMCH1-216ENST00000512820 CDK5RAP2Q96SN8 1893 aa8.08□□□□□ -1.12
LIMCH1-216ENST00000512820 A0A1B0GTL3 188 aa8.08□□□□□ -1.12
LIMCH1-216ENST00000512820 A0A1W2PQ72 361 aa8.08□□□□□ -1.12
LIMCH1-216ENST00000512820 NPIPB15A6NHN6 443 aaPredicted RBP8.08□□□□□ -1.12
LIMCH1-216ENST00000512820 M0R129 80 aa8.08□□□□□ -1.12
LIMCH1-216ENST00000512820 GABARAPO95166 117 aa8.08□□□□□ -1.12
LIMCH1-216ENST00000512820 IFNGP01579 166 aa8.08□□□□□ -1.12
LIMCH1-216ENST00000512820 ALPPP05187 535 aa8.08□□□□□ -1.12
LIMCH1-216ENST00000512820 C1GALT1C1LP0DN25 315 aa8.08□□□□□ -1.12
LIMCH1-216ENST00000512820 NDUFA9Q16795 377 aa8.08□□□□□ -1.12
LIMCH1-216ENST00000512820 EEF1AKMT2Q5JPI9 291 aaKnown RBP8.08□□□□□ -1.12
LIMCH1-216ENST00000512820 ATAT1Q5SQI0 421 aa8.08□□□□□ -1.12
LIMCH1-216ENST00000512820 PLPP4Q5VZY2 271 aa8.08□□□□□ -1.12
LIMCH1-216ENST00000512820 IKBIPQ70UQ0 350 aa8.08□□□□□ -1.12
LIMCH1-216ENST00000512820 OR8J1Q8NGP2 316 aa8.08□□□□□ -1.12
LIMCH1-216ENST00000512820 RGMAQ96B86 450 aa8.08□□□□□ -1.12
LIMCH1-216ENST00000512820 NUS1Q96E22 293 aa8.08□□□□□ -1.12
LIMCH1-216ENST00000512820 SCRN2Q96FV2 425 aa8.08□□□□□ -1.12
LIMCH1-216ENST00000512820 TTYH2Q9BSA4 534 aa8.08□□□□□ -1.12
LIMCH1-216ENST00000512820 OR51V1Q9H2C8 321 aa8.08□□□□□ -1.12
LIMCH1-216ENST00000512820 FAM170BA6NMN3 283 aa8.08□□□□□ -1.12
LIMCH1-216ENST00000512820 H0YC42 278 aa8.08□□□□□ -1.12
LIMCH1-216ENST00000512820 EIF3FO00303 357 aaPredicted RBP8.08□□□□□ -1.12
LIMCH1-216ENST00000512820 SLC16A6O15403 523 aa8.08□□□□□ -1.12
LIMCH1-216ENST00000512820 HLA-DPB1P04440 258 aa8.08□□□□□ -1.12
LIMCH1-216ENST00000512820 CDK1P06493 297 aa8.08□□□□□ -1.12
LIMCH1-216ENST00000512820 IFI30P13284 250 aa8.08□□□□□ -1.12
LIMCH1-216ENST00000512820 CA5AP35218 305 aa8.08□□□□□ -1.12
LIMCH1-216ENST00000512820 SPINT3P49223 89 aa8.08□□□□□ -1.12
LIMCH1-216ENST00000512820 RPS26P62854 115 aaKnown RBP8.08□□□□□ -1.12
LIMCH1-216ENST00000512820 ARF5P84085 180 aa8.08□□□□□ -1.12
LIMCH1-216ENST00000512820 SLC9A5Q14940 896 aa8.08□□□□□ -1.12
LIMCH1-216ENST00000512820 KCNJ8Q15842 424 aa8.08□□□□□ -1.12
LIMCH1-216ENST00000512820 AFMIDQ63HM1 303 aa8.08□□□□□ -1.12
LIMCH1-216ENST00000512820 Q6ZPB1 254 aaPredicted RBP8.08□□□□□ -1.12
LIMCH1-216ENST00000512820 LINC00471Q8N535 108 aa8.08□□□□□ -1.12
LIMCH1-216ENST00000512820 OR52N2Q8NGI0 321 aa8.08□□□□□ -1.12
LIMCH1-216ENST00000512820 LKAAEAR1Q8TD35 194 aa8.08□□□□□ -1.12
LIMCH1-216ENST00000512820 SMG7Q92540 1137 aaKnown RBP8.08□□□□□ -1.12
LIMCH1-216ENST00000512820 ARMC5Q96C12 935 aa8.08□□□□□ -1.12
LIMCH1-216ENST00000512820 ZFP3Q96NJ6 502 aa8.08□□□□□ -1.12
LIMCH1-216ENST00000512820 MTIF3Q9H2K0 278 aaKnown RBP8.08□□□□□ -1.12
LIMCH1-216ENST00000512820 LTB4R2Q9NPC1 389 aa8.08□□□□□ -1.12
LIMCH1-216ENST00000512820 PAQR5Q9NXK6 330 aaPredicted RBP8.08□□□□□ -1.12
LIMCH1-216ENST00000512820 CFAP20Q9Y6A4 193 aaKnown RBP8.08□□□□□ -1.12
LIMCH1-216ENST00000512820 SCN9AQ15858 1988 aa8.08□□□□□ -1.12
LIMCH1-216ENST00000512820 DAPL1A0PJW8 107 aa8.07□□□□□ -1.12
LIMCH1-216ENST00000512820 SH3D21A4FU49 640 aa8.07□□□□□ -1.12
LIMCH1-216ENST00000512820 CLDN24A6NM45 220 aa8.07□□□□□ -1.12
LIMCH1-216ENST00000512820 CAPN5O15484 640 aaPredicted RBP8.07□□□□□ -1.12
LIMCH1-216ENST00000512820 CDKN2CP42773 168 aa8.07□□□□□ -1.12
LIMCH1-216ENST00000512820 CCR4P51679 360 aa8.07□□□□□ -1.12
LIMCH1-216ENST00000512820 CDH11P55287 796 aa8.07□□□□□ -1.12
LIMCH1-216ENST00000512820 ISL1P61371 349 aa8.07□□□□□ -1.12
LIMCH1-216ENST00000512820 VLDLRP98155 873 aa8.07□□□□□ -1.12
LIMCH1-216ENST00000512820 ADPRMQ3LIE5 342 aa8.07□□□□□ -1.12
LIMCH1-216ENST00000512820 C22orf42Q6IC83 251 aa8.07□□□□□ -1.12
LIMCH1-216ENST00000512820 PRR23CQ6ZRP0 262 aa8.07□□□□□ -1.12
LIMCH1-216ENST00000512820 CEP68Q76N32 757 aa8.07□□□□□ -1.12
LIMCH1-216ENST00000512820 HDDC2Q7Z4H3 204 aa8.07□□□□□ -1.12
LIMCH1-216ENST00000512820 ZNF438Q7Z4V0 828 aa8.07□□□□□ -1.12
LIMCH1-216ENST00000512820 FAM217AQ8IXS0 508 aa8.07□□□□□ -1.12
LIMCH1-216ENST00000512820 CBARPQ8N350 705 aaPredicted RBP8.07□□□□□ -1.12
LIMCH1-216ENST00000512820 RNF175Q8N4F7 328 aa8.07□□□□□ -1.12
LIMCH1-216ENST00000512820 CD99L2Q8TCZ2 262 aa8.07□□□□□ -1.12
LIMCH1-216ENST00000512820 ZNF486Q96H40 463 aaPredicted RBP8.07□□□□□ -1.12
LIMCH1-216ENST00000512820 DEFB118Q96PH6 123 aa8.07□□□□□ -1.12
LIMCH1-216ENST00000512820 ZNF300Q96RE9 604 aaPredicted RBP8.07□□□□□ -1.12
LIMCH1-216ENST00000512820 C1QTNF7Q9BXJ2 289 aa8.07□□□□□ -1.12
LIMCH1-216ENST00000512820 CCDC59Q9P031 241 aaKnown RBP8.07□□□□□ -1.12
LIMCH1-216ENST00000512820 SLCO3A1Q9UIG8 710 aa8.07□□□□□ -1.12
LIMCH1-216ENST00000512820 PLAGL1Q9UM63 463 aa8.07□□□□□ -1.12
LIMCH1-216ENST00000512820 PRKAB1Q9Y478 270 aa8.07□□□□□ -1.12
LIMCH1-216ENST00000512820 FAM172BPA6NC97 362 aa8.07□□□□□ -1.12
LIMCH1-216ENST00000512820 TMEM189-UBE2V1I3L0A0 370 aa8.07□□□□□ -1.12
LIMCH1-216ENST00000512820 LEFTY2O00292 366 aa8.07□□□□□ -1.12
LIMCH1-216ENST00000512820 FAAHO00519 579 aa8.07□□□□□ -1.12
LIMCH1-216ENST00000512820 CCR7P32248 378 aa8.07□□□□□ -1.12
LIMCH1-216ENST00000512820 ZNHIT3Q15649 155 aaPredicted RBP8.07□□□□□ -1.12
LIMCH1-216ENST00000512820 AAK1Q2M2I8 961 aa8.07□□□□□ -1.12
LIMCH1-216ENST00000512820 IER5LQ5T953 404 aa8.07□□□□□ -1.12
LIMCH1-216ENST00000512820 MEDAGQ5VYS4 303 aa8.07□□□□□ -1.12
LIMCH1-216ENST00000512820 IGSF21Q96ID5 467 aa8.07□□□□□ -1.12
LIMCH1-216ENST00000512820 WACQ9BTA9 647 aa8.07□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms