RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 GPN3Q9UHW5 284 aaPredicted RBP11.58□□□□□ -0.56
LIMCH1-213ENST00000511496 PCDHA10Q9Y5I2 948 aa11.58□□□□□ -0.56
LIMCH1-213ENST00000511496 TXNL1O43396 289 aa11.57□□□□□ -0.56
LIMCH1-213ENST00000511496 CILPO75339 1184 aa11.57□□□□□ -0.56
LIMCH1-213ENST00000511496 BEST1O76090 585 aa11.57□□□□□ -0.56
LIMCH1-213ENST00000511496 SMPD1P17405 629 aa11.57□□□□□ -0.56
LIMCH1-213ENST00000511496 AGTR2P50052 363 aa11.57□□□□□ -0.56
LIMCH1-213ENST00000511496 JAK3P52333 1124 aa11.57□□□□□ -0.56
LIMCH1-213ENST00000511496 ACLYP53396 1101 aa11.57□□□□□ -0.56
LIMCH1-213ENST00000511496 EIF4HQ15056 248 aaKnown RBP11.57□□□□□ -0.56
LIMCH1-213ENST00000511496 SURF1Q15526 300 aa11.57□□□□□ -0.56
LIMCH1-213ENST00000511496 ANKS6Q68DC2 871 aa11.57□□□□□ -0.56
LIMCH1-213ENST00000511496 NOTUMQ6P988 496 aa11.57□□□□□ -0.56
LIMCH1-213ENST00000511496 C19orf48Q6RUI8 117 aa11.57□□□□□ -0.56
LIMCH1-213ENST00000511496 AFTPHQ6ULP2 937 aa11.57□□□□□ -0.56
LIMCH1-213ENST00000511496 CBLN2Q8IUK8 224 aa11.57□□□□□ -0.56
LIMCH1-213ENST00000511496 FBXO39Q8N4B4 442 aa11.57□□□□□ -0.56
LIMCH1-213ENST00000511496 MTFMTQ96DP5 389 aaKnown RBP11.57□□□□□ -0.56
LIMCH1-213ENST00000511496 IL4I1Q96RQ9 567 aa11.57□□□□□ -0.56
LIMCH1-213ENST00000511496 GAL3ST1Q99999 423 aa11.57□□□□□ -0.56
LIMCH1-213ENST00000511496 NTMT1Q9BV86 223 aa11.57□□□□□ -0.56
LIMCH1-213ENST00000511496 NUSAP1Q9BXS6 441 aaKnown RBP11.57□□□□□ -0.56
LIMCH1-213ENST00000511496 PRKD2Q9BZL6 878 aa11.57□□□□□ -0.56
LIMCH1-213ENST00000511496 NT5DC2Q9H857 520 aa11.57□□□□□ -0.56
LIMCH1-213ENST00000511496 SLC6A13Q9NSD5 602 aa11.57□□□□□ -0.56
LIMCH1-213ENST00000511496 NKIRAS2Q9NYR9 191 aa11.57□□□□□ -0.56
LIMCH1-213ENST00000511496 USP3Q9Y6I4 520 aa11.57□□□□□ -0.56
LIMCH1-213ENST00000511496 ROBO1Q9Y6N7 1651 aa11.57□□□□□ -0.56
LIMCH1-213ENST00000511496 GPR171O14626 319 aa11.57□□□□□ -0.56
LIMCH1-213ENST00000511496 SCG5P05408 212 aa11.57□□□□□ -0.56
LIMCH1-213ENST00000511496 MAGEA2P43356 314 aa11.57□□□□□ -0.56
LIMCH1-213ENST00000511496 FAM189BP81408 668 aa11.57□□□□□ -0.56
LIMCH1-213ENST00000511496 SEC23BQ15437 767 aa11.57□□□□□ -0.56
LIMCH1-213ENST00000511496 CHRNA6Q15825 494 aa11.57□□□□□ -0.56
LIMCH1-213ENST00000511496 SPANXN4Q5MJ08 99 aa11.57□□□□□ -0.56
LIMCH1-213ENST00000511496 IL27RAQ6UWB1 636 aa11.57□□□□□ -0.56
LIMCH1-213ENST00000511496 HSDL2Q6YN16 418 aa11.57□□□□□ -0.56
LIMCH1-213ENST00000511496 SPATA2LQ8IUW3 424 aaPredicted RBP11.57□□□□□ -0.56
LIMCH1-213ENST00000511496 DMRTC2Q8IXT2 367 aaPredicted RBP11.57□□□□□ -0.56
LIMCH1-213ENST00000511496 HASPINQ8TF76 798 aa11.57□□□□□ -0.56
LIMCH1-213ENST00000511496 NR4A3Q92570 626 aa11.57□□□□□ -0.56
LIMCH1-213ENST00000511496 PEX11GQ96HA9 241 aa11.57□□□□□ -0.56
LIMCH1-213ENST00000511496 CYP2S1Q96SQ9 504 aa11.57□□□□□ -0.56
LIMCH1-213ENST00000511496 MAP3K3Q99759 626 aa11.57□□□□□ -0.56
LIMCH1-213ENST00000511496 QRSL1Q9H0R6 528 aaKnown RBP11.57□□□□□ -0.56
LIMCH1-213ENST00000511496 ACTL8Q9H568 366 aa11.57□□□□□ -0.56
LIMCH1-213ENST00000511496 PTTG3PQ9NZH4 202 aa11.57□□□□□ -0.56
LIMCH1-213ENST00000511496 POMT2Q9UKY4 750 aa11.57□□□□□ -0.56
LIMCH1-213ENST00000511496 NEUROG3Q9Y4Z2 214 aa11.57□□□□□ -0.56
LIMCH1-213ENST00000511496 NINQ8N4C6 2090 aa11.57□□□□□ -0.56
LIMCH1-213ENST00000511496 DDTLA6NHG4 134 aaPredicted RBP11.57□□□□□ -0.56
LIMCH1-213ENST00000511496 WRBO00258 174 aa11.57□□□□□ -0.56
LIMCH1-213ENST00000511496 ATP5C1P36542 298 aaKnown RBP11.57□□□□□ -0.56
LIMCH1-213ENST00000511496 XKP51811 444 aa11.57□□□□□ -0.56
LIMCH1-213ENST00000511496 BTG1P62324 171 aa11.57□□□□□ -0.56
LIMCH1-213ENST00000511496 PITX1P78337 314 aaPredicted RBP11.57□□□□□ -0.56
LIMCH1-213ENST00000511496 ZNF528Q3MIS6 628 aa11.57□□□□□ -0.56
LIMCH1-213ENST00000511496 WASH2PQ6VEQ5 465 aa11.57□□□□□ -0.56
LIMCH1-213ENST00000511496 OR52P1PQ8NH57 321 aa11.57□□□□□ -0.56
LIMCH1-213ENST00000511496 PHOSPHO2Q8TCD6 241 aa11.57□□□□□ -0.56
LIMCH1-213ENST00000511496 PHOSPHO1Q8TCT1 267 aa11.57□□□□□ -0.56
LIMCH1-213ENST00000511496 CENPIQ92674 756 aaPredicted RBP11.57□□□□□ -0.56
LIMCH1-213ENST00000511496 ADAT1Q9BUB4 502 aaKnown RBP11.57□□□□□ -0.56
LIMCH1-213ENST00000511496 TAPBPLQ9BX59 468 aa11.57□□□□□ -0.56
LIMCH1-213ENST00000511496 OR51M1Q9H341 326 aa11.57□□□□□ -0.56
LIMCH1-213ENST00000511496 EIF2B4Q9UI10 523 aaKnown RBP11.57□□□□□ -0.56
LIMCH1-213ENST00000511496 HAS3O00219 553 aa11.56□□□□□ -0.56
LIMCH1-213ENST00000511496 ARNTLO00327 626 aa11.56□□□□□ -0.56
LIMCH1-213ENST00000511496 SCAMP1O15126 338 aa11.56□□□□□ -0.56
LIMCH1-213ENST00000511496 LANCL1O43813 399 aa11.56□□□□□ -0.56
LIMCH1-213ENST00000511496 IFNA4P05014 189 aa11.56□□□□□ -0.56
LIMCH1-213ENST00000511496 PFKMP08237 780 aa11.56□□□□□ -0.56
LIMCH1-213ENST00000511496 APEHP13798 732 aaKnown RBP11.56□□□□□ -0.56
LIMCH1-213ENST00000511496 ENGP17813 658 aa11.56□□□□□ -0.56
LIMCH1-213ENST00000511496 STARP49675 285 aa11.56□□□□□ -0.56
LIMCH1-213ENST00000511496 CLCN5P51795 746 aa11.56□□□□□ -0.56
LIMCH1-213ENST00000511496 TSNQ15631 228 aaKnown RBP11.56□□□□□ -0.56
LIMCH1-213ENST00000511496 NTRK2Q16620 822 aa11.56□□□□□ -0.56
LIMCH1-213ENST00000511496 OVOS1Q6IE37 1185 aa11.56□□□□□ -0.56
LIMCH1-213ENST00000511496 PDE12Q6L8Q7 609 aaKnown RBP11.56□□□□□ -0.56
LIMCH1-213ENST00000511496 CDC42EP5Q6NZY7 148 aa11.56□□□□□ -0.56
LIMCH1-213ENST00000511496 PAQR6Q6TCH4 344 aa11.56□□□□□ -0.56
LIMCH1-213ENST00000511496 DBX2Q6ZNG2 339 aa11.56□□□□□ -0.56
LIMCH1-213ENST00000511496 Q6ZSR9 355 aa11.56□□□□□ -0.56
LIMCH1-213ENST00000511496 CNTN4Q8IWV2 1026 aa11.56□□□□□ -0.56
LIMCH1-213ENST00000511496 MSRB3Q8IXL7 192 aa11.56□□□□□ -0.56
LIMCH1-213ENST00000511496 UPF1Q92900 1129 aaKnown RBP eCLIP11.56□□□□□ -0.56
LIMCH1-213ENST00000511496 TADA1Q96BN2 335 aa11.56□□□□□ -0.56
LIMCH1-213ENST00000511496 NDUFAF4Q9P032 175 aa11.56□□□□□ -0.56
LIMCH1-213ENST00000511496 HYKKA2RU49 373 aa11.56□□□□□ -0.56
LIMCH1-213ENST00000511496 D6RAR5 112 aa11.56□□□□□ -0.56
LIMCH1-213ENST00000511496 CASKO14936 926 aa11.56□□□□□ -0.56
LIMCH1-213ENST00000511496 SDC3O75056 442 aa11.56□□□□□ -0.56
LIMCH1-213ENST00000511496 NCR1O76036 304 aa11.56□□□□□ -0.56
LIMCH1-213ENST00000511496 HIST1H2AGP0C0S8 130 aaPredicted RBP11.56□□□□□ -0.56
LIMCH1-213ENST00000511496 PRR35P0CG20 571 aa11.56□□□□□ -0.56
LIMCH1-213ENST00000511496 GABRB1P18505 474 aa11.56□□□□□ -0.56
LIMCH1-213ENST00000511496 HIST1H2ADP20671 130 aa11.56□□□□□ -0.56
LIMCH1-213ENST00000511496 KCNJ5P48544 419 aa11.56□□□□□ -0.56
LIMCH1-213ENST00000511496 SRP9P49458 86 aaKnown RBP11.56□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms