RNA–Protein interactions for RNA: ENST00000509769.5

USP53-205, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-205ENST00000509769 SLC22A5O76082 557 aa3.46□□□□□ -1.86
USP53-205ENST00000509769 RCBTB2O95199 551 aa3.46□□□□□ -1.86
USP53-205ENST00000509769 TUBG1P23258 451 aa3.46□□□□□ -1.86
USP53-205ENST00000509769 PEX2P28328 305 aa3.46□□□□□ -1.86
USP53-205ENST00000509769 MZF1P28698 734 aaPredicted RBP3.46□□□□□ -1.86
USP53-205ENST00000509769 RPL21P46778 160 aaKnown RBP3.46□□□□□ -1.86
USP53-205ENST00000509769 RPS10P46783 165 aaKnown RBP3.46□□□□□ -1.86
USP53-205ENST00000509769 NUDT6P53370 316 aa3.46□□□□□ -1.86
USP53-205ENST00000509769 LIMK1P53667 647 aa3.46□□□□□ -1.86
USP53-205ENST00000509769 EPHA4P54764 986 aa3.46□□□□□ -1.86
USP53-205ENST00000509769 MANFP55145 182 aaKnown RBP3.46□□□□□ -1.86
USP53-205ENST00000509769 OR10A3P58181 314 aa3.46□□□□□ -1.86
USP53-205ENST00000509769 TPPP2P59282 170 aa3.46□□□□□ -1.86
USP53-205ENST00000509769 HIST1H3AP68431 136 aa3.46□□□□□ -1.86
USP53-205ENST00000509769 ST3GAL4Q11206 333 aa3.46□□□□□ -1.86
USP53-205ENST00000509769 NFATC3Q12968 1075 aa3.46□□□□□ -1.86
USP53-205ENST00000509769 HNRNPDQ14103 355 aaKnown RBP3.46□□□□□ -1.86
USP53-205ENST00000509769 HEPACAMQ14CZ8 416 aa3.46□□□□□ -1.86
USP53-205ENST00000509769 ZNF792Q3KQV3 632 aa3.46□□□□□ -1.86
USP53-205ENST00000509769 TKFCQ3LXA3 575 aa3.46□□□□□ -1.86
USP53-205ENST00000509769 ELOA3BQ3SY89 546 aa3.46□□□□□ -1.86
USP53-205ENST00000509769 KIAA1614Q5VZ46 1190 aa3.46□□□□□ -1.86
USP53-205ENST00000509769 FIGNL1Q6PIW4 674 aa3.46□□□□□ -1.86
USP53-205ENST00000509769 GPRIN3Q6ZVF9 776 aa3.46□□□□□ -1.86
USP53-205ENST00000509769 FA2HQ7L5A8 372 aa3.46□□□□□ -1.86
USP53-205ENST00000509769 SLC26A9Q7LBE3 791 aa3.46□□□□□ -1.86
USP53-205ENST00000509769 TMCO2Q7Z6W1 182 aaPredicted RBP3.46□□□□□ -1.86
USP53-205ENST00000509769 C11orf96Q7Z7L8 435 aa3.46□□□□□ -1.86
USP53-205ENST00000509769 SLC38A9Q8NBW4 561 aa3.46□□□□□ -1.86
USP53-205ENST00000509769 ELOA3Q8NG57 546 aa3.46□□□□□ -1.86
USP53-205ENST00000509769 OR13J1Q8NGT2 312 aa3.46□□□□□ -1.86
USP53-205ENST00000509769 SLC35F5Q8WV83 523 aa3.46□□□□□ -1.86
USP53-205ENST00000509769 TSEN15Q8WW01 171 aaKnown RBP3.46□□□□□ -1.86
USP53-205ENST00000509769 PSMF1Q92530 271 aa3.46□□□□□ -1.86
USP53-205ENST00000509769 RAB8BQ92930 207 aa3.46□□□□□ -1.86
USP53-205ENST00000509769 SCLYQ96I15 445 aa3.46□□□□□ -1.86
USP53-205ENST00000509769 CHIAQ9BZP6 476 aa3.46□□□□□ -1.86
USP53-205ENST00000509769 GBA3Q9H227 469 aa3.46□□□□□ -1.86
USP53-205ENST00000509769 TDRD3Q9H7E2 651 aaKnown RBP3.46□□□□□ -1.86
USP53-205ENST00000509769 COQ10BQ9H8M1 238 aa3.46□□□□□ -1.86
USP53-205ENST00000509769 SNTG1Q9NSN8 517 aa3.46□□□□□ -1.86
USP53-205ENST00000509769 DZANK1Q9NVP4 752 aa3.46□□□□□ -1.86
USP53-205ENST00000509769 PAK1IP1Q9NWT1 392 aaPredicted RBP3.46□□□□□ -1.86
USP53-205ENST00000509769 MOCS1Q9NZB8 636 aa3.46□□□□□ -1.86
USP53-205ENST00000509769 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP3.46□□□□□ -1.86
USP53-205ENST00000509769 KCMF1Q9P0J7 381 aa3.46□□□□□ -1.86
USP53-205ENST00000509769 CPQQ9Y646 472 aa3.46□□□□□ -1.86
USP53-205ENST00000509769 C5orf52A6NGY3 159 aa3.46□□□□□ -1.86
USP53-205ENST00000509769 ISM1B1AKI9 464 aa3.46□□□□□ -1.86
USP53-205ENST00000509769 ZNF670-ZNF695F2Z2N8 137 aa3.46□□□□□ -1.86
USP53-205ENST00000509769 H3BSA7 217 aa3.46□□□□□ -1.86
USP53-205ENST00000509769 ADGRB1O14514 1584 aa3.46□□□□□ -1.86
USP53-205ENST00000509769 FANCGO15287 622 aa3.46□□□□□ -1.86
USP53-205ENST00000509769 LYRM1O43325 122 aa3.46□□□□□ -1.86
USP53-205ENST00000509769 CYTIPO60759 359 aa3.46□□□□□ -1.86
USP53-205ENST00000509769 GCATO75600 419 aa3.46□□□□□ -1.86
USP53-205ENST00000509769 LY86O95711 162 aa3.46□□□□□ -1.86
USP53-205ENST00000509769 GOT2P00505 430 aaKnown RBP3.46□□□□□ -1.86
USP53-205ENST00000509769 CFBP00751 764 aa3.46□□□□□ -1.86
USP53-205ENST00000509769 TP53P04637 393 aaPredicted RBP3.46□□□□□ -1.86
USP53-205ENST00000509769 CYP2B6P20813 491 aa3.46□□□□□ -1.86
USP53-205ENST00000509769 PRPH2P23942 346 aa3.46□□□□□ -1.86
USP53-205ENST00000509769 CD34P28906 385 aa3.46□□□□□ -1.86
USP53-205ENST00000509769 PCSK1P29120 753 aa3.46□□□□□ -1.86
USP53-205ENST00000509769 F2RL1P55085 397 aa3.46□□□□□ -1.86
USP53-205ENST00000509769 ERVK-24P63145 666 aa3.46□□□□□ -1.86
USP53-205ENST00000509769 IL24Q13007 206 aa3.46□□□□□ -1.86
USP53-205ENST00000509769 TNK1Q13470 666 aa3.46□□□□□ -1.86
USP53-205ENST00000509769 GRM4Q14833 912 aa3.46□□□□□ -1.86
USP53-205ENST00000509769 DHCR24Q15392 516 aa3.46□□□□□ -1.86
USP53-205ENST00000509769 KHDC1Q4VXA5 237 aaKnown RBP3.46□□□□□ -1.86
USP53-205ENST00000509769 EDC4Q6P2E9 1401 aaKnown RBP3.46□□□□□ -1.86
USP53-205ENST00000509769 ANKS1BQ7Z6G8 1248 aa3.46□□□□□ -1.86
USP53-205ENST00000509769 GPR65Q8IYL9 337 aa3.46□□□□□ -1.86
USP53-205ENST00000509769 SLC38A6Q8IZM9 456 aa3.46□□□□□ -1.86
USP53-205ENST00000509769 PHYHIPQ92561 330 aa3.46□□□□□ -1.86
USP53-205ENST00000509769 NTAN1Q96AB6 310 aa3.46□□□□□ -1.86
USP53-205ENST00000509769 BSCL2Q96G97 398 aaPredicted RBP3.46□□□□□ -1.86
USP53-205ENST00000509769 PRRT1Q99946 306 aa3.46□□□□□ -1.86
USP53-205ENST00000509769 CITED2Q99967 270 aaPredicted RBP3.46□□□□□ -1.86
USP53-205ENST00000509769 P2RY13Q9BPV8 354 aa3.46□□□□□ -1.86
USP53-205ENST00000509769 TPPP3Q9BW30 176 aa3.46□□□□□ -1.86
USP53-205ENST00000509769 CELF4Q9BZC1 486 aaKnown RBP3.46□□□□□ -1.86
USP53-205ENST00000509769 GSX2Q9BZM3 304 aa3.46□□□□□ -1.86
USP53-205ENST00000509769 TMEM117Q9H0C3 514 aa3.46□□□□□ -1.86
USP53-205ENST00000509769 OR51J1Q9H342 316 aa3.46□□□□□ -1.86
USP53-205ENST00000509769 VRTNQ9H8Y1 702 aa3.46□□□□□ -1.86
USP53-205ENST00000509769 DDIT4Q9NX09 232 aa3.46□□□□□ -1.86
USP53-205ENST00000509769 A0A0B4J203 849 aa3.46□□□□□ -1.86
USP53-205ENST00000509769 FAM237AA0A1B0GTK4 181 aa3.46□□□□□ -1.86
USP53-205ENST00000509769 A0A1W2PPL8 197 aa3.46□□□□□ -1.86
USP53-205ENST00000509769 TMEM200CA6NKL6 621 aa3.46□□□□□ -1.86
USP53-205ENST00000509769 KCNU1A8MYU2 1149 aa3.46□□□□□ -1.86
USP53-205ENST00000509769 PRR5-ARHGAP8B1AHC4 643 aa3.46□□□□□ -1.86
USP53-205ENST00000509769 ARHGAP33O14559 1287 aa3.46□□□□□ -1.86
USP53-205ENST00000509769 FGF10O15520 208 aaPredicted RBP3.46□□□□□ -1.86
USP53-205ENST00000509769 TLX3O43711 291 aaPredicted RBP3.46□□□□□ -1.86
USP53-205ENST00000509769 PIP5K1CO60331 668 aa3.46□□□□□ -1.86
USP53-205ENST00000509769 NME6O75414 186 aaPredicted RBP3.46□□□□□ -1.86
USP53-205ENST00000509769 QDPRP09417 244 aa3.46□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms