RNA–Protein interactions for RNA: ENST00000507778.1

HMGB1P28-201, Transcript of high mobility group box 1 pseudogene 28, humanhuman

BASIC

Gene HMGB1P28, Length 552 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P28-201ENST00000507778 WIPI2Q9Y4P8 454 aa3.46□□□□□ -1.86
HMGB1P28-201ENST00000507778 LOC105371242A0A075B767 164 aa3.45□□□□□ -1.86
HMGB1P28-201ENST00000507778 A0A0U1RQG5 324 aaPredicted RBP3.45□□□□□ -1.86
HMGB1P28-201ENST00000507778 ATP6AP2A0A1C7CYW4 349 aa3.45□□□□□ -1.86
HMGB1P28-201ENST00000507778 SLC15A5A6NIM6 579 aa3.45□□□□□ -1.86
HMGB1P28-201ENST00000507778 MPTX1A8MV57 137 aa3.45□□□□□ -1.86
HMGB1P28-201ENST00000507778 P2RX6O15547 441 aa3.45□□□□□ -1.86
HMGB1P28-201ENST00000507778 ARHGEF9O43307 516 aa3.45□□□□□ -1.86
HMGB1P28-201ENST00000507778 TLX2O43763 284 aaPredicted RBP3.45□□□□□ -1.86
HMGB1P28-201ENST00000507778 KRT86O43790 486 aa3.45□□□□□ -1.86
HMGB1P28-201ENST00000507778 VEGFDO43915 354 aa3.45□□□□□ -1.86
HMGB1P28-201ENST00000507778 ECE2O60344 883 aa3.45□□□□□ -1.86
HMGB1P28-201ENST00000507778 MTRF1O75570 445 aaKnown RBP3.45□□□□□ -1.86
HMGB1P28-201ENST00000507778 PRDM1O75626 825 aa3.45□□□□□ -1.86
HMGB1P28-201ENST00000507778 EPOP01588 193 aa3.45□□□□□ -1.86
HMGB1P28-201ENST00000507778 MT-ND3P03897 115 aa3.45□□□□□ -1.86
HMGB1P28-201ENST00000507778 CHRNGP07510 517 aa3.45□□□□□ -1.86
HMGB1P28-201ENST00000507778 NUDT17P0C025 328 aa3.45□□□□□ -1.86
HMGB1P28-201ENST00000507778 ZSCAN5DPP0CG00 497 aa3.45□□□□□ -1.86
HMGB1P28-201ENST00000507778 RNF224P0DH78 156 aa3.45□□□□□ -1.86
HMGB1P28-201ENST00000507778 ANPEPP15144 967 aa3.45□□□□□ -1.86
HMGB1P28-201ENST00000507778 STMN1P16949 149 aa3.45□□□□□ -1.86
HMGB1P28-201ENST00000507778 PDHA2P29803 388 aa3.45□□□□□ -1.86
HMGB1P28-201ENST00000507778 STIP1P31948 543 aaKnown RBP3.45□□□□□ -1.86
HMGB1P28-201ENST00000507778 NT5C2P49902 561 aa3.45□□□□□ -1.86
HMGB1P28-201ENST00000507778 ERVK-16P61578 105 aa3.45□□□□□ -1.86
HMGB1P28-201ENST00000507778 PDE7AQ13946 482 aa3.45□□□□□ -1.86
HMGB1P28-201ENST00000507778 GIT2Q14161 759 aa3.45□□□□□ -1.86
HMGB1P28-201ENST00000507778 KRT81Q14533 505 aa3.45□□□□□ -1.86
HMGB1P28-201ENST00000507778 C3AR1Q16581 482 aa3.45□□□□□ -1.86
HMGB1P28-201ENST00000507778 TRIM65Q6PJ69 517 aa3.45□□□□□ -1.86
HMGB1P28-201ENST00000507778 Q71RC1 249 aaPredicted RBP3.45□□□□□ -1.86
HMGB1P28-201ENST00000507778 ZNF410Q86VK4 478 aa3.45□□□□□ -1.86
HMGB1P28-201ENST00000507778 NLRP14Q86W24 1093 aa3.45□□□□□ -1.86
HMGB1P28-201ENST00000507778 PEX5LQ8IYB4 626 aa3.45□□□□□ -1.86
HMGB1P28-201ENST00000507778 FBXW8Q8N3Y1 598 aa3.45□□□□□ -1.86
HMGB1P28-201ENST00000507778 ARL10Q8N8L6 244 aa3.45□□□□□ -1.86
HMGB1P28-201ENST00000507778 SIDT2Q8NBJ9 832 aaKnown RBP3.45□□□□□ -1.86
HMGB1P28-201ENST00000507778 TRPV3Q8NET8 790 aa3.45□□□□□ -1.86
HMGB1P28-201ENST00000507778 OR9Q2Q8NGE9 314 aa3.45□□□□□ -1.86
HMGB1P28-201ENST00000507778 OR5M9Q8NGP3 310 aa3.45□□□□□ -1.86
HMGB1P28-201ENST00000507778 PRCCQ92733 491 aaPredicted RBP3.45□□□□□ -1.86
HMGB1P28-201ENST00000507778 CNRIP1Q96F85 164 aaPredicted RBP3.45□□□□□ -1.86
HMGB1P28-201ENST00000507778 NSMCE3Q96MG7 304 aa3.45□□□□□ -1.86
HMGB1P28-201ENST00000507778 OPRPNQ99935 248 aaPredicted RBP3.45□□□□□ -1.86
HMGB1P28-201ENST00000507778 FAM213AQ9BRX8 229 aa3.45□□□□□ -1.86
HMGB1P28-201ENST00000507778 THAP9Q9H5L6 903 aa3.45□□□□□ -1.86
HMGB1P28-201ENST00000507778 FNDC4Q9H6D8 234 aaPredicted RBP3.45□□□□□ -1.86
HMGB1P28-201ENST00000507778 ZNF665Q9H7R5 613 aa3.45□□□□□ -1.86
HMGB1P28-201ENST00000507778 MARCH7Q9H992 704 aa3.45□□□□□ -1.86
HMGB1P28-201ENST00000507778 ZCCHC3Q9NUD5 404 aaKnown RBP3.45□□□□□ -1.86
HMGB1P28-201ENST00000507778 TEX10Q9NXF1 929 aaPredicted RBP3.45□□□□□ -1.86
HMGB1P28-201ENST00000507778 PLEK2Q9NYT0 353 aa3.45□□□□□ -1.86
HMGB1P28-201ENST00000507778 NLGN3Q9NZ94 848 aa3.45□□□□□ -1.86
HMGB1P28-201ENST00000507778 AKAP7Q9P0M2 348 aaPredicted RBP3.45□□□□□ -1.86
HMGB1P28-201ENST00000507778 MDFICQ9P1T7 246 aa3.45□□□□□ -1.86
HMGB1P28-201ENST00000507778 KLK11Q9UBX7 282 aa3.45□□□□□ -1.86
HMGB1P28-201ENST00000507778 BAIAP2L1Q9UHR4 511 aa3.45□□□□□ -1.86
HMGB1P28-201ENST00000507778 TEKT2Q9UIF3 430 aa3.45□□□□□ -1.86
HMGB1P28-201ENST00000507778 TDRKHQ9Y2W6 561 aaKnown RBP3.45□□□□□ -1.86
HMGB1P28-201ENST00000507778 ZHX2Q9Y6X8 837 aa3.45□□□□□ -1.86
HMGB1P28-201ENST00000507778 UMODL1Q5DID0 1318 aa3.44□□□□□ -1.86
HMGB1P28-201ENST00000507778 KPNA7A9QM74 516 aa3.44□□□□□ -1.86
HMGB1P28-201ENST00000507778 PALM2-AKAP2B1ALY0 433 aaPredicted RBP3.44□□□□□ -1.86
HMGB1P28-201ENST00000507778 GMNNO75496 209 aa3.44□□□□□ -1.86
HMGB1P28-201ENST00000507778 FGF19O95750 216 aa3.44□□□□□ -1.86
HMGB1P28-201ENST00000507778 MMP10P09238 476 aa3.44□□□□□ -1.86
HMGB1P28-201ENST00000507778 EZRP15311 586 aaKnown RBP3.44□□□□□ -1.86
HMGB1P28-201ENST00000507778 CYP3A5P20815 502 aa3.44□□□□□ -1.86
HMGB1P28-201ENST00000507778 EDNRAP25101 427 aa3.44□□□□□ -1.86
HMGB1P28-201ENST00000507778 CCR4P51679 360 aa3.44□□□□□ -1.86
HMGB1P28-201ENST00000507778 TMEM50BP56557 158 aa3.44□□□□□ -1.86
HMGB1P28-201ENST00000507778 BACE1P56817 501 aa3.44□□□□□ -1.86
HMGB1P28-201ENST00000507778 GSCP56915 257 aaPredicted RBP3.44□□□□□ -1.86
HMGB1P28-201ENST00000507778 EVCP57679 992 aa3.44□□□□□ -1.86
HMGB1P28-201ENST00000507778 GFPT1Q06210 699 aaPredicted RBP3.44□□□□□ -1.86
HMGB1P28-201ENST00000507778 CDC37Q16543 378 aaPredicted RBP3.44□□□□□ -1.86
HMGB1P28-201ENST00000507778 STX1AQ16623 288 aa3.44□□□□□ -1.86
HMGB1P28-201ENST00000507778 MOGAT2Q3SYC2 334 aa3.44□□□□□ -1.86
HMGB1P28-201ENST00000507778 FASTKD1Q53R41 847 aaKnown RBP3.44□□□□□ -1.86
HMGB1P28-201ENST00000507778 CEP85LQ5SZL2 805 aa3.44□□□□□ -1.86
HMGB1P28-201ENST00000507778 ETFRF1Q6IPR1 90 aa3.44□□□□□ -1.86
HMGB1P28-201ENST00000507778 LCLAT1Q6UWP7 414 aa3.44□□□□□ -1.86
HMGB1P28-201ENST00000507778 B3GLCTQ6Y288 498 aa3.44□□□□□ -1.86
HMGB1P28-201ENST00000507778 LRRTM1Q86UE6 522 aa3.44□□□□□ -1.86
HMGB1P28-201ENST00000507778 RTL3Q8N8U3 475 aaKnown RBP3.44□□□□□ -1.86
HMGB1P28-201ENST00000507778 OR10G7Q8NGN6 311 aa3.44□□□□□ -1.86
HMGB1P28-201ENST00000507778 GPR148Q8TDV2 347 aa3.44□□□□□ -1.86
HMGB1P28-201ENST00000507778 ATP8B4Q8TF62 1192 aa3.44□□□□□ -1.86
HMGB1P28-201ENST00000507778 UBTD2Q8WUN7 234 aa3.44□□□□□ -1.86
HMGB1P28-201ENST00000507778 CCDC47Q96A33 483 aaKnown RBP3.44□□□□□ -1.86
HMGB1P28-201ENST00000507778 POM121L2Q96KW2 1035 aa3.44□□□□□ -1.86
HMGB1P28-201ENST00000507778 LINC00479Q96M42 142 aa3.44□□□□□ -1.86
HMGB1P28-201ENST00000507778 PRAM1Q96QH2 718 aa3.44□□□□□ -1.86
HMGB1P28-201ENST00000507778 ERGIC2Q96RQ1 377 aa3.44□□□□□ -1.86
HMGB1P28-201ENST00000507778 NAP1L3Q99457 506 aaPredicted RBP3.44□□□□□ -1.86
HMGB1P28-201ENST00000507778 NTMT1Q9BV86 223 aa3.44□□□□□ -1.86
HMGB1P28-201ENST00000507778 FGFBP2Q9BYJ0 223 aa3.44□□□□□ -1.86
HMGB1P28-201ENST00000507778 UPF3AQ9H1J1 476 aaKnown RBP3.44□□□□□ -1.86
HMGB1P28-201ENST00000507778 GPN1Q9HCN4 374 aaPredicted RBP3.44□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms