RNA–Protein interactions for RNA: ENST00000507459.5

CCHCR1-222, Transcript of coiled-coil alpha-helical rod protein 1, human

TSL 5

Gene CCHCR1, Length 582 nt, Biotype nonsense mediated decay.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CCHCR1-222	ENST00000507459	CDK15	Q96Q40	435 aa		13.29	□□□□□ -0.28
CCHCR1-222	ENST00000507459	SERINC2	Q96SA4	455 aa		13.29	□□□□□ -0.28
CCHCR1-222	ENST00000507459	MTERF1	Q99551	399 aa	Known RBP	13.29	□□□□□ -0.28
CCHCR1-222	ENST00000507459	MRPL57	Q9BQC6	102 aa	Known RBP	13.29	□□□□□ -0.28
CCHCR1-222	ENST00000507459	NPL	Q9BXD5	320 aa	Predicted RBP	13.29	□□□□□ -0.28
CCHCR1-222	ENST00000507459	MRPL46	Q9H2W6	279 aa	Known RBP	13.29	□□□□□ -0.28
CCHCR1-222	ENST00000507459	OR51B5	Q9H339	312 aa		13.29	□□□□□ -0.28
CCHCR1-222	ENST00000507459	NOL11	Q9H8H0	719 aa	Known RBP	13.29	□□□□□ -0.28
CCHCR1-222	ENST00000507459	KCNK13	Q9HB14	408 aa		13.29	□□□□□ -0.28
CCHCR1-222	ENST00000507459	PRDM9	Q9NQV7	894 aa		13.29	□□□□□ -0.28
CCHCR1-222	ENST00000507459	PSMC3IP	Q9P2W1	217 aa	Predicted RBP	13.29	□□□□□ -0.28
CCHCR1-222	ENST00000507459	TMCO1	Q9UM00	188 aa		13.29	□□□□□ -0.28
CCHCR1-222	ENST00000507459	RNF11	Q9Y3C5	154 aa		13.29	□□□□□ -0.28
CCHCR1-222	ENST00000507459	DYTN	A2CJ06	578 aa		13.28	□□□□□ -0.28
CCHCR1-222	ENST00000507459	VPS4B	O75351	444 aa		13.28	□□□□□ -0.28
CCHCR1-222	ENST00000507459	SOX11	P35716	441 aa		13.28	□□□□□ -0.28
CCHCR1-222	ENST00000507459	PIK3CG	P48736	1102 aa		13.28	□□□□□ -0.28
CCHCR1-222	ENST00000507459	CCNG1	P51959	295 aa		13.28	□□□□□ -0.28
CCHCR1-222	ENST00000507459	LIM2	P55344	173 aa		13.28	□□□□□ -0.28
CCHCR1-222	ENST00000507459	RAB38	P57729	211 aa		13.28	□□□□□ -0.28
CCHCR1-222	ENST00000507459	ZNF33B	Q06732	778 aa		13.28	□□□□□ -0.28
CCHCR1-222	ENST00000507459	EXT1	Q16394	746 aa		13.28	□□□□□ -0.28
CCHCR1-222	ENST00000507459	AP5B1	Q2VPB7	878 aa		13.28	□□□□□ -0.28
CCHCR1-222	ENST00000507459	ABHD17B	Q5VST6	288 aa		13.28	□□□□□ -0.28
CCHCR1-222	ENST00000507459	FCRLB	Q6BAA4	426 aa		13.28	□□□□□ -0.28
CCHCR1-222	ENST00000507459	RPS27L	Q71UM5	84 aa	Known RBP	13.28	□□□□□ -0.28
CCHCR1-222	ENST00000507459	UBE3D	Q7Z6J8	389 aa		13.28	□□□□□ -0.28
CCHCR1-222	ENST00000507459	EIF1AD	Q8N9N8	165 aa	Known RBP	13.28	□□□□□ -0.28
CCHCR1-222	ENST00000507459	SRFBP1	Q8NEF9	429 aa	Known RBP	13.28	□□□□□ -0.28
CCHCR1-222	ENST00000507459	ARMC2	Q8NEN0	867 aa		13.28	□□□□□ -0.28
CCHCR1-222	ENST00000507459	SNRNP40	Q96DI7	357 aa	Known RBP	13.28	□□□□□ -0.28
CCHCR1-222	ENST00000507459	C19orf60	Q96EN9	201 aa		13.28	□□□□□ -0.28
CCHCR1-222	ENST00000507459	CMTM7	Q96FZ5	175 aa		13.28	□□□□□ -0.28
CCHCR1-222	ENST00000507459	NSUN5	Q96P11	429 aa	Known RBP	13.28	□□□□□ -0.28
CCHCR1-222	ENST00000507459	KCNC2	Q96PR1	638 aa		13.28	□□□□□ -0.28
CCHCR1-222	ENST00000507459	SORBS1	Q9BX66	1292 aa	Known RBP	13.28	□□□□□ -0.28
CCHCR1-222	ENST00000507459	NECTIN3	Q9NQS3	549 aa		13.28	□□□□□ -0.28
CCHCR1-222	ENST00000507459	PRDM7	Q9NQW5	492 aa		13.28	□□□□□ -0.28
CCHCR1-222	ENST00000507459	PRTFDC1	Q9NRG1	225 aa		13.28	□□□□□ -0.28
CCHCR1-222	ENST00000507459	STMN3	Q9NZ72	180 aa		13.28	□□□□□ -0.28
CCHCR1-222	ENST00000507459	TMEM216	Q9P0N5	145 aa		13.28	□□□□□ -0.28
CCHCR1-222	ENST00000507459	ADGRE2	Q9UHX3	823 aa		13.28	□□□□□ -0.28
CCHCR1-222	ENST00000507459	VPS4A	Q9UN37	437 aa		13.28	□□□□□ -0.28
CCHCR1-222	ENST00000507459	PCDHGA11	Q9Y5H2	935 aa		13.28	□□□□□ -0.28
CCHCR1-222	ENST00000507459	SMIM23	A6NLE4	172 aa		13.27	□□□□□ -0.29
CCHCR1-222	ENST00000507459	STX16-NPEPL1	H3BU86	382 aa		13.27	□□□□□ -0.29
CCHCR1-222	ENST00000507459	CLDN4	O14493	209 aa		13.27	□□□□□ -0.29
CCHCR1-222	ENST00000507459	OR7A17	O14581	309 aa		13.27	□□□□□ -0.29
CCHCR1-222	ENST00000507459	STX16	O14662	325 aa		13.27	□□□□□ -0.29
CCHCR1-222	ENST00000507459	CLDN9	O95484	217 aa		13.27	□□□□□ -0.29
CCHCR1-222	ENST00000507459	SHBG	P04278	402 aa		13.27	□□□□□ -0.29
CCHCR1-222	ENST00000507459	SBK3	P0C264	359 aa		13.27	□□□□□ -0.29
CCHCR1-222	ENST00000507459	PYGB	P11216	843 aa		13.27	□□□□□ -0.29
CCHCR1-222	ENST00000507459	ATP5A1	P25705	553 aa	Known RBP	13.27	□□□□□ -0.29
CCHCR1-222	ENST00000507459	SERPINB1	P30740	379 aa		13.27	□□□□□ -0.29
CCHCR1-222	ENST00000507459	SSR2	P43308	183 aa		13.27	□□□□□ -0.29
CCHCR1-222	ENST00000507459	SLCO1A2	P46721	670 aa		13.27	□□□□□ -0.29
CCHCR1-222	ENST00000507459	ST13	P50502	369 aa	Known RBP	13.27	□□□□□ -0.29
CCHCR1-222	ENST00000507459	NEK2	P51955	445 aa		13.27	□□□□□ -0.29
CCHCR1-222	ENST00000507459	RAP1GDS1	P52306	607 aa		13.27	□□□□□ -0.29
CCHCR1-222	ENST00000507459	HNRNPF	P52597	415 aa	Known RBP	13.27	□□□□□ -0.29
CCHCR1-222	ENST00000507459	SLC26A5	P58743	744 aa		13.27	□□□□□ -0.29
CCHCR1-222	ENST00000507459	RPS13	P62277	151 aa	Known RBP	13.27	□□□□□ -0.29
CCHCR1-222	ENST00000507459	PHEX	P78562	749 aa		13.27	□□□□□ -0.29
CCHCR1-222	ENST00000507459	SLC13A2	Q13183	592 aa		13.27	□□□□□ -0.29
CCHCR1-222	ENST00000507459	ZNF169	Q14929	603 aa	Predicted RBP	13.27	□□□□□ -0.29
CCHCR1-222	ENST00000507459	TLR1	Q15399	786 aa		13.27	□□□□□ -0.29
CCHCR1-222	ENST00000507459	ZRSR2	Q15696	482 aa	Known RBP	13.27	□□□□□ -0.29
CCHCR1-222	ENST00000507459	TMEM35A	Q53FP2	167 aa		13.27	□□□□□ -0.29
CCHCR1-222	ENST00000507459	DEPDC1	Q5TB30	811 aa		13.27	□□□□□ -0.29
CCHCR1-222	ENST00000507459	KHDRBS2	Q5VWX1	349 aa	Known RBP	13.27	□□□□□ -0.29
CCHCR1-222	ENST00000507459	METTL2B	Q6P1Q9	378 aa	Known RBP	13.27	□□□□□ -0.29
CCHCR1-222	ENST00000507459	ZNF793	Q6ZN11	406 aa		13.27	□□□□□ -0.29
CCHCR1-222	ENST00000507459	CLNK	Q7Z7G1	428 aa		13.27	□□□□□ -0.29
CCHCR1-222	ENST00000507459	ACOT4	Q8N9L9	421 aa		13.27	□□□□□ -0.29
CCHCR1-222	ENST00000507459	TMEM52	Q8NDY8	209 aa		13.27	□□□□□ -0.29
CCHCR1-222	ENST00000507459	OR52B6	Q8NGF0	335 aa		13.27	□□□□□ -0.29
CCHCR1-222	ENST00000507459	OR1N1	Q8NGS0	311 aa		13.27	□□□□□ -0.29
CCHCR1-222	ENST00000507459	M1AP	Q8TC57	530 aa		13.27	□□□□□ -0.29
CCHCR1-222	ENST00000507459	MTFMT	Q96DP5	389 aa	Known RBP	13.27	□□□□□ -0.29
CCHCR1-222	ENST00000507459	CSF3R	Q99062	836 aa		13.27	□□□□□ -0.29
CCHCR1-222	ENST00000507459	MAPKAP1	Q9BPZ7	522 aa		13.27	□□□□□ -0.29
CCHCR1-222	ENST00000507459	TBCD	Q9BTW9	1192 aa		13.27	□□□□□ -0.29
CCHCR1-222	ENST00000507459	ROGDI	Q9GZN7	287 aa		13.27	□□□□□ -0.29
CCHCR1-222	ENST00000507459	CSTF2T	Q9H0L4	616 aa	Known RBP eCLIP	13.27	□□□□□ -0.29
CCHCR1-222	ENST00000507459	ANKZF1	Q9H8Y5	726 aa		13.27	□□□□□ -0.29
CCHCR1-222	ENST00000507459	SEMA4B	Q9NPR2	832 aa	Predicted RBP	13.27	□□□□□ -0.29
CCHCR1-222	ENST00000507459	DMRT3	Q9NQL9	472 aa		13.27	□□□□□ -0.29
CCHCR1-222	ENST00000507459	PNO1	Q9NRX1	252 aa	Known RBP	13.27	□□□□□ -0.29
CCHCR1-222	ENST00000507459	ASF1B	Q9NVP2	202 aa		13.27	□□□□□ -0.29
CCHCR1-222	ENST00000507459	FETUB	Q9UGM5	382 aa		13.27	□□□□□ -0.29
CCHCR1-222	ENST00000507459	TEKT2	Q9UIF3	430 aa		13.27	□□□□□ -0.29
CCHCR1-222	ENST00000507459	PCTP	Q9UKL6	214 aa		13.27	□□□□□ -0.29
CCHCR1-222	ENST00000507459	DAPP1	Q9UN19	280 aa		13.27	□□□□□ -0.29
CCHCR1-222	ENST00000507459	MRPS33	Q9Y291	106 aa	Known RBP	13.27	□□□□□ -0.29
CCHCR1-222	ENST00000507459	MYOCOS	A0A1B0GUC4	107 aa		13.26	□□□□□ -0.29
CCHCR1-222	ENST00000507459	TCRBV16S1A1N1	A0A5B0	115 aa		13.26	□□□□□ -0.29
CCHCR1-222	ENST00000507459		A8MT66	165 aa		13.26	□□□□□ -0.29
CCHCR1-222	ENST00000507459	FOXO6	A8MYZ6	492 aa		13.26	□□□□□ -0.29
CCHCR1-222	ENST00000507459		H0YIV9	168 aa		13.26	□□□□□ -0.29

Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms