RNA–Protein interactions for RNA: ENST00000496447.5

PTPRF-215, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 5,887 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-215ENST00000496447 ZSCAN4Q8NAM6 433 aaPredicted RBP12.67□□□□□ -0.38
PTPRF-215ENST00000496447 THEM6Q8WUY1 208 aa12.67□□□□□ -0.38
PTPRF-215ENST00000496447 ASB9Q96DX5 294 aa12.67□□□□□ -0.38
PTPRF-215ENST00000496447 UCK2Q9BZX2 261 aa12.67□□□□□ -0.38
PTPRF-215ENST00000496447 CD207Q9UJ71 328 aa12.67□□□□□ -0.38
PTPRF-215ENST00000496447 SOX1O00570 391 aaPredicted RBP12.67□□□□□ -0.38
PTPRF-215ENST00000496447 OAZ2O95190 189 aa12.67□□□□□ -0.38
PTPRF-215ENST00000496447 C6P13671 934 aa12.67□□□□□ -0.38
PTPRF-215ENST00000496447 SFT2D3Q587I9 215 aa12.67□□□□□ -0.38
PTPRF-215ENST00000496447 ZNF678Q5SXM1 525 aa12.67□□□□□ -0.38
PTPRF-215ENST00000496447 TMPRSS9Q7Z410 1059 aa12.67□□□□□ -0.38
PTPRF-215ENST00000496447 DNAJA4Q8WW22 397 aaPredicted RBP12.67□□□□□ -0.38
PTPRF-215ENST00000496447 RBP7Q96R05 134 aa12.67□□□□□ -0.38
PTPRF-215ENST00000496447 AMBNQ9NP70 447 aa12.67□□□□□ -0.38
PTPRF-215ENST00000496447 TMEM59LQ9UK28 342 aa12.67□□□□□ -0.38
PTPRF-215ENST00000496447 PRAMEF33A0A0G2JMD5 474 aa12.67□□□□□ -0.38
PTPRF-215ENST00000496447 A0A1W2PRQ8 180 aa12.67□□□□□ -0.38
PTPRF-215ENST00000496447 PRAMEF10O60809 474 aa12.67□□□□□ -0.38
PTPRF-215ENST00000496447 C1GALT1C1LP0DN25 315 aa12.67□□□□□ -0.38
PTPRF-215ENST00000496447 ECHS1P30084 290 aa12.67□□□□□ -0.38
PTPRF-215ENST00000496447 ACSL1P33121 698 aa12.67□□□□□ -0.38
PTPRF-215ENST00000496447 MAZP56270 477 aaKnown RBP12.67□□□□□ -0.38
PTPRF-215ENST00000496447 HNRNPKP61978 463 aaKnown RBP eCLIP12.67□□□□□ -0.384e-6■■□□□ 12.4
PTPRF-215ENST00000496447 FLYWCH1Q4VC44 716 aa12.67□□□□□ -0.38
PTPRF-215ENST00000496447 LIPJQ5W064 366 aa12.67□□□□□ -0.38
PTPRF-215ENST00000496447 CCSAPQ6IQ19 270 aaPredicted RBP12.67□□□□□ -0.38
PTPRF-215ENST00000496447 C1orf94Q6P1W5 598 aa12.67□□□□□ -0.38
PTPRF-215ENST00000496447 SDR16C5Q8N3Y7 309 aa12.67□□□□□ -0.38
PTPRF-215ENST00000496447 ISOC1Q96CN7 298 aa12.67□□□□□ -0.38
PTPRF-215ENST00000496447 ZC3H10Q96K80 434 aaKnown RBP12.67□□□□□ -0.38
PTPRF-215ENST00000496447 CDCA3Q99618 268 aaPredicted RBP12.67□□□□□ -0.38
PTPRF-215ENST00000496447 REEP4Q9H6H4 257 aa12.67□□□□□ -0.38
PTPRF-215ENST00000496447 ZFR2Q9UPR6 939 aaKnown RBP12.67□□□□□ -0.38
PTPRF-215ENST00000496447 ZSCAN5BA6NJL1 495 aa12.66□□□□□ -0.38
PTPRF-215ENST00000496447 OR2B3O76000 313 aa12.66□□□□□ -0.38
PTPRF-215ENST00000496447 SEMA4FO95754 770 aa12.66□□□□□ -0.38
PTPRF-215ENST00000496447 AGTR2P50052 363 aa12.66□□□□□ -0.38
PTPRF-215ENST00000496447 PITX1P78337 314 aaPredicted RBP12.66□□□□□ -0.38
PTPRF-215ENST00000496447 C10orf62Q5T681 223 aaPredicted RBP12.66□□□□□ -0.38
PTPRF-215ENST00000496447 HMBOX1Q6NT76 420 aa12.66□□□□□ -0.38
PTPRF-215ENST00000496447 ZNF101Q8IZC7 436 aa12.66□□□□□ -0.38
PTPRF-215ENST00000496447 STOX2Q9P2F5 926 aaPredicted RBP12.66□□□□□ -0.38
PTPRF-215ENST00000496447 ZNF142P52746 1687 aaPredicted RBP12.66□□□□□ -0.38
PTPRF-215ENST00000496447 CH25HO95992 272 aa12.66□□□□□ -0.38
PTPRF-215ENST00000496447 SUOXP51687 545 aa12.66□□□□□ -0.38
PTPRF-215ENST00000496447 SELENOVP59797 346 aa12.66□□□□□ -0.38
PTPRF-215ENST00000496447 USP53Q70EK8 1073 aa12.66□□□□□ -0.38
PTPRF-215ENST00000496447 HSH2DQ96JZ2 352 aa12.66□□□□□ -0.38
PTPRF-215ENST00000496447 MRGPRX2Q96LB1 330 aa12.66□□□□□ -0.38
PTPRF-215ENST00000496447 B4GALT7Q9UBV7 327 aa12.66□□□□□ -0.38
PTPRF-215ENST00000496447 MGAT4AQ9UM21 535 aa12.66□□□□□ -0.38
PTPRF-215ENST00000496447 RNF13O43567 381 aa12.66□□□□□ -0.38
PTPRF-215ENST00000496447 CCDC116Q8IYX3 515 aa12.66□□□□□ -0.38
PTPRF-215ENST00000496447 TMEM234Q8WY98 164 aa12.66□□□□□ -0.38
PTPRF-215ENST00000496447 NR4A3Q92570 626 aa12.66□□□□□ -0.38
PTPRF-215ENST00000496447 FBRSQ9HAH7 460 aa12.66□□□□□ -0.38
PTPRF-215ENST00000496447 MID1O15344 667 aa12.66□□□□□ -0.38
PTPRF-215ENST00000496447 KCNC1P48547 511 aa12.66□□□□□ -0.38
PTPRF-215ENST00000496447 ARSJQ5FYB0 599 aaPredicted RBP12.66□□□□□ -0.38
PTPRF-215ENST00000496447 GPAT4Q86UL3 456 aa12.66□□□□□ -0.38
PTPRF-215ENST00000496447 APCDD1Q8J025 514 aa12.66□□□□□ -0.38
PTPRF-215ENST00000496447 AQP11Q8NBQ7 271 aa12.66□□□□□ -0.38
PTPRF-215ENST00000496447 SIGLEC10Q96LC7 697 aa12.66□□□□□ -0.38
PTPRF-215ENST00000496447 ORAI3Q9BRQ5 295 aa12.66□□□□□ -0.38
PTPRF-215ENST00000496447 G6PC3Q9BUM1 346 aa12.66□□□□□ -0.38
PTPRF-215ENST00000496447 OR14I1A6ND48 311 aa12.65□□□□□ -0.38
PTPRF-215ENST00000496447 OR4D2P58180 307 aa12.65□□□□□ -0.38
PTPRF-215ENST00000496447 ABHD18Q0P651 414 aa12.65□□□□□ -0.38
PTPRF-215ENST00000496447 PAK6Q9NQU5 681 aaPredicted RBP12.65□□□□□ -0.38
PTPRF-215ENST00000496447 COMMD3Q9UBI1 195 aa12.65□□□□□ -0.38
PTPRF-215ENST00000496447 RARRES3Q9UL19 164 aa12.65□□□□□ -0.38
PTPRF-215ENST00000496447 AKAP12Q02952 1782 aa12.65□□□□□ -0.38
PTPRF-215ENST00000496447 INMTO95050 263 aa12.65□□□□□ -0.38
PTPRF-215ENST00000496447 APBB3O95704 486 aa12.65□□□□□ -0.38
PTPRF-215ENST00000496447 SLC6A6P31641 620 aa12.65□□□□□ -0.38
PTPRF-215ENST00000496447 NTHL1P78549 312 aa12.65□□□□□ -0.38
PTPRF-215ENST00000496447 TIGD6Q17RP2 521 aa12.65□□□□□ -0.38
PTPRF-215ENST00000496447 FBXO43Q4G163 708 aa12.65□□□□□ -0.38
PTPRF-215ENST00000496447 XKR5Q6UX68 686 aa12.65□□□□□ -0.38
PTPRF-215ENST00000496447 TIFABQ6ZNK6 161 aa12.65□□□□□ -0.38
PTPRF-215ENST00000496447 SPATC1Q76KD6 591 aa12.65□□□□□ -0.38
PTPRF-215ENST00000496447 CSNK1A1LQ8N752 337 aa12.65□□□□□ -0.38
PTPRF-215ENST00000496447 TMIEQ8NEW7 156 aa12.65□□□□□ -0.38
PTPRF-215ENST00000496447 OR4K1Q8NGD4 311 aa12.65□□□□□ -0.38
PTPRF-215ENST00000496447 THAP3Q8WTV1 239 aaPredicted RBP12.65□□□□□ -0.38
PTPRF-215ENST00000496447 TM9SF2Q99805 663 aa12.65□□□□□ -0.38
PTPRF-215ENST00000496447 ANKRA2Q9H9E1 313 aa12.65□□□□□ -0.38
PTPRF-215ENST00000496447 A0A1W2PP18 115 aa12.65□□□□□ -0.38
PTPRF-215ENST00000496447 K7ERQ8 282 aa12.65□□□□□ -0.38
PTPRF-215ENST00000496447 CYP17A1P05093 508 aa12.65□□□□□ -0.38
PTPRF-215ENST00000496447 C8BP07358 591 aa12.65□□□□□ -0.38
PTPRF-215ENST00000496447 UQCRC2P22695 453 aa12.65□□□□□ -0.38
PTPRF-215ENST00000496447 GSK3BP49841 420 aa12.65□□□□□ -0.38
PTPRF-215ENST00000496447 CLRN1P58418 232 aa12.65□□□□□ -0.38
PTPRF-215ENST00000496447 RPS15P62841 145 aaKnown RBP12.65□□□□□ -0.38
PTPRF-215ENST00000496447 DEFB134Q4QY38 66 aa12.65□□□□□ -0.38
PTPRF-215ENST00000496447 TMEM40Q8WWA1 233 aa12.65□□□□□ -0.38
PTPRF-215ENST00000496447 TRUB1Q8WWH5 349 aaKnown RBP12.65□□□□□ -0.38
PTPRF-215ENST00000496447 DAZLQ92904 295 aaKnown RBP12.65□□□□□ -0.38
PTPRF-215ENST00000496447 TMBIM1Q969X1 311 aa12.65□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms