RNA–Protein interactions for RNA: ENST00000495327.1

RBM28-208, Transcript of RNA binding motif protein 28, human

TSL 2

Gene RBM28, Length 395 nt, Biotype retained intron, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RBM28-208	ENST00000495327	TMEM35A	Q53FP2	167 aa		12.51	□□□□□ -0.41
RBM28-208	ENST00000495327	LIPJ	Q5W064	366 aa		12.51	□□□□□ -0.41
RBM28-208	ENST00000495327	SCUBE1	Q8IWY4	988 aa		12.51	□□□□□ -0.41
RBM28-208	ENST00000495327	LGI4	Q8N135	537 aa		12.51	□□□□□ -0.41
RBM28-208	ENST00000495327	PLD6	Q8N2A8	252 aa	Known RBP	12.51	□□□□□ -0.41
RBM28-208	ENST00000495327	TEX9	Q8N6V9	391 aa		12.51	□□□□□ -0.41
RBM28-208	ENST00000495327	AMER2	Q8N7J2	671 aa		12.51	□□□□□ -0.41
RBM28-208	ENST00000495327	SRFBP1	Q8NEF9	429 aa	Known RBP	12.51	□□□□□ -0.41
RBM28-208	ENST00000495327	ARMC2	Q8NEN0	867 aa		12.51	□□□□□ -0.41
RBM28-208	ENST00000495327	OR7G3	Q8NG95	312 aa		12.51	□□□□□ -0.41
RBM28-208	ENST00000495327	ELP5	Q8TE02	316 aa		12.51	□□□□□ -0.41
RBM28-208	ENST00000495327	ZNF354B	Q96LW1	612 aa		12.51	□□□□□ -0.41
RBM28-208	ENST00000495327	ROGDI	Q9GZN7	287 aa		12.51	□□□□□ -0.41
RBM28-208	ENST00000495327	COPS7B	Q9H9Q2	264 aa	Predicted RBP	12.51	□□□□□ -0.41
RBM28-208	ENST00000495327	AGPAT4	Q9NRZ5	378 aa		12.51	□□□□□ -0.41
RBM28-208	ENST00000495327	ADGRE2	Q9UHX3	823 aa		12.51	□□□□□ -0.41
RBM28-208	ENST00000495327	TMCO1	Q9UM00	188 aa		12.51	□□□□□ -0.41
RBM28-208	ENST00000495327	MRPS33	Q9Y291	106 aa	Known RBP	12.51	□□□□□ -0.41
RBM28-208	ENST00000495327	TNPO3	Q9Y5L0	923 aa	Known RBP	12.51	□□□□□ -0.41
RBM28-208	ENST00000495327	USP9Y	O00507	2555 aa	Predicted RBP	12.51	□□□□□ -0.41
RBM28-208	ENST00000495327	TRIM49D1	C9J1S8	452 aa		12.5	□□□□□ -0.41
RBM28-208	ENST00000495327	E2F3	O00716	465 aa		12.5	□□□□□ -0.41
RBM28-208	ENST00000495327	CDK2AP1	O14519	115 aa		12.5	□□□□□ -0.41
RBM28-208	ENST00000495327	RIPK2	O43353	540 aa		12.5	□□□□□ -0.41
RBM28-208	ENST00000495327	SCEL	O95171	688 aa		12.5	□□□□□ -0.41
RBM28-208	ENST00000495327	WDPCP	O95876	746 aa		12.5	□□□□□ -0.41
RBM28-208	ENST00000495327	MAOA	P21397	527 aa		12.5	□□□□□ -0.41
RBM28-208	ENST00000495327	CERS1	P27544	350 aa		12.5	□□□□□ -0.41
RBM28-208	ENST00000495327	PIK3CB	P42338	1070 aa		12.5	□□□□□ -0.41
RBM28-208	ENST00000495327	HSD17B7	P56937	341 aa		12.5	□□□□□ -0.41
RBM28-208	ENST00000495327	BTG2	P78543	158 aa		12.5	□□□□□ -0.41
RBM28-208	ENST00000495327	RUNX2	Q13950	521 aa		12.5	□□□□□ -0.41
RBM28-208	ENST00000495327	RCN2	Q14257	317 aa		12.5	□□□□□ -0.41
RBM28-208	ENST00000495327	ACER2	Q5QJU3	275 aa		12.5	□□□□□ -0.41
RBM28-208	ENST00000495327	ZNF595	Q8IYB9	648 aa		12.5	□□□□□ -0.41
RBM28-208	ENST00000495327	CNPY4	Q8N129	248 aa		12.5	□□□□□ -0.41
RBM28-208	ENST00000495327	CATSPER1	Q8NEC5	780 aa		12.5	□□□□□ -0.41
RBM28-208	ENST00000495327	F2RL3	Q96RI0	385 aa		12.5	□□□□□ -0.41
RBM28-208	ENST00000495327	TBCD	Q9BTW9	1192 aa		12.5	□□□□□ -0.41
RBM28-208	ENST00000495327	TXLNGY	Q9BZA5	131 aa		12.5	□□□□□ -0.41
RBM28-208	ENST00000495327	KCNK13	Q9HB14	408 aa		12.5	□□□□□ -0.41
RBM28-208	ENST00000495327	NECTIN3	Q9NQS3	549 aa		12.5	□□□□□ -0.41
RBM28-208	ENST00000495327	PRDM7	Q9NQW5	492 aa		12.5	□□□□□ -0.41
RBM28-208	ENST00000495327	CPSF2	Q9P2I0	782 aa	Known RBP	12.5	□□□□□ -0.41
RBM28-208	ENST00000495327	XPR1	Q9UBH6	696 aa		12.5	□□□□□ -0.41
RBM28-208	ENST00000495327	FETUB	Q9UGM5	382 aa		12.5	□□□□□ -0.41
RBM28-208	ENST00000495327	DAPP1	Q9UN19	280 aa		12.5	□□□□□ -0.41
RBM28-208	ENST00000495327	ANGPTL3	Q9Y5C1	460 aa		12.5	□□□□□ -0.41
RBM28-208	ENST00000495327	CLDN16	Q9Y5I7	305 aa		12.5	□□□□□ -0.41
RBM28-208	ENST00000495327	FAM227A	F5H4B4	570 aa		12.49	□□□□□ -0.41
RBM28-208	ENST00000495327		H0YIV9	168 aa		12.49	□□□□□ -0.41
RBM28-208	ENST00000495327	STX16-NPEPL1	H3BU86	382 aa		12.49	□□□□□ -0.41
RBM28-208	ENST00000495327	CYR61	O00622	381 aa		12.49	□□□□□ -0.41
RBM28-208	ENST00000495327	STX16	O14662	325 aa		12.49	□□□□□ -0.41
RBM28-208	ENST00000495327	CBX6	O95503	412 aa		12.49	□□□□□ -0.41
RBM28-208	ENST00000495327	SNRPA	P09012	282 aa	Known RBP	12.49	□□□□□ -0.41
RBM28-208	ENST00000495327	RHOXF2B	P0C7M4	288 aa		12.49	□□□□□ -0.41
RBM28-208	ENST00000495327	PCNA	P12004	261 aa		12.49	□□□□□ -0.41
RBM28-208	ENST00000495327	GCA	P28676	217 aa		12.49	□□□□□ -0.41
RBM28-208	ENST00000495327	ARFIP1	P53367	373 aa		12.49	□□□□□ -0.41
RBM28-208	ENST00000495327	LIM2	P55344	173 aa		12.49	□□□□□ -0.41
RBM28-208	ENST00000495327	TAS2R50	P59544	299 aa		12.49	□□□□□ -0.41
RBM28-208	ENST00000495327	MRPL49	Q13405	166 aa	Known RBP	12.49	□□□□□ -0.41
RBM28-208	ENST00000495327	GTF2H2	Q13888	395 aa		12.49	□□□□□ -0.41
RBM28-208	ENST00000495327	NR6A1	Q15406	480 aa		12.49	□□□□□ -0.41
RBM28-208	ENST00000495327	MEP1A	Q16819	746 aa		12.49	□□□□□ -0.41
RBM28-208	ENST00000495327	GTF2H2C	Q6P1K8	395 aa		12.49	□□□□□ -0.41
RBM28-208	ENST00000495327	FAM180A	Q6UWF9	173 aa		12.49	□□□□□ -0.41
RBM28-208	ENST00000495327	ZNF793	Q6ZN11	406 aa		12.49	□□□□□ -0.41
RBM28-208	ENST00000495327	GOLGA7	Q7Z5G4	137 aa		12.49	□□□□□ -0.41
RBM28-208	ENST00000495327	UBE3D	Q7Z6J8	389 aa		12.49	□□□□□ -0.41
RBM28-208	ENST00000495327	CRLF3	Q8IUI8	442 aa		12.49	□□□□□ -0.41
RBM28-208	ENST00000495327	SLC5A8	Q8N695	610 aa		12.49	□□□□□ -0.41
RBM28-208	ENST00000495327	PTGR2	Q8N8N7	351 aa	Predicted RBP	12.49	□□□□□ -0.41
RBM28-208	ENST00000495327	EIF1AD	Q8N9N8	165 aa	Known RBP	12.49	□□□□□ -0.41
RBM28-208	ENST00000495327	ST6GALNAC3	Q8NDV1	305 aa		12.49	□□□□□ -0.41
RBM28-208	ENST00000495327	NFAM1	Q8NET5	270 aa	Predicted RBP	12.49	□□□□□ -0.41
RBM28-208	ENST00000495327	OR1N1	Q8NGS0	311 aa		12.49	□□□□□ -0.41
RBM28-208	ENST00000495327	UHMK1	Q8TAS1	419 aa	Known RBP	12.49	□□□□□ -0.41
RBM28-208	ENST00000495327	MTBP	Q96DY7	904 aa		12.49	□□□□□ -0.41
RBM28-208	ENST00000495327	CMTM7	Q96FZ5	175 aa		12.49	□□□□□ -0.41
RBM28-208	ENST00000495327	CSF3R	Q99062	836 aa		12.49	□□□□□ -0.41
RBM28-208	ENST00000495327	NPAS2	Q99743	824 aa		12.49	□□□□□ -0.41
RBM28-208	ENST00000495327	RHOXF2	Q9BQY4	288 aa		12.49	□□□□□ -0.41
RBM28-208	ENST00000495327	ACTR8	Q9H981	624 aa		12.49	□□□□□ -0.41
RBM28-208	ENST00000495327	L2HGDH	Q9H9P8	463 aa		12.49	□□□□□ -0.41
RBM28-208	ENST00000495327	LYRM4	Q9HD34	91 aa		12.49	□□□□□ -0.41
RBM28-208	ENST00000495327	DMRT3	Q9NQL9	472 aa		12.49	□□□□□ -0.41
RBM28-208	ENST00000495327	PRTFDC1	Q9NRG1	225 aa		12.49	□□□□□ -0.41
RBM28-208	ENST00000495327	ZNF358	Q9NW07	568 aa		12.49	□□□□□ -0.41
RBM28-208	ENST00000495327	PLA2G3	Q9NZ20	509 aa		12.49	□□□□□ -0.41
RBM28-208	ENST00000495327	STMN3	Q9NZ72	180 aa		12.49	□□□□□ -0.41
RBM28-208	ENST00000495327	ABI3	Q9P2A4	366 aa		12.49	□□□□□ -0.41
RBM28-208	ENST00000495327	PCDHGB6	Q9Y5F9	930 aa		12.49	□□□□□ -0.41
RBM28-208	ENST00000495327	PCDHGA11	Q9Y5H2	935 aa		12.49	□□□□□ -0.41
RBM28-208	ENST00000495327	SPTAN1	Q13813	2472 aa	Known RBP	12.49	□□□□□ -0.41
RBM28-208	ENST00000495327	ZGRF1	Q86YA3	2104 aa		12.49	□□□□□ -0.41
RBM28-208	ENST00000495327	SVIL	O95425	2214 aa		12.48	□□□□□ -0.41
RBM28-208	ENST00000495327	BLACE	A4D250	179 aa		12.48	□□□□□ -0.41
RBM28-208	ENST00000495327	LRRC14B	A6NHZ5	514 aa		12.48	□□□□□ -0.41

Retrieved 100 of 20,778 RNA–protein pairs in 9.3 ms