RNA–Protein interactions for RNA: ENST00000494518.1

SKA1-205, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2

Gene SKA1, Length 746 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-205ENST00000494518 URADA6NGE7 173 aa11.78□□□□□ -0.52
SKA1-205ENST00000494518 FAM166BA8MTA8 275 aa11.78□□□□□ -0.52
SKA1-205ENST00000494518 KIR3DP1A8MWS1 328 aa11.78□□□□□ -0.52
SKA1-205ENST00000494518 G3V3Y1 287 aa11.78□□□□□ -0.52
SKA1-205ENST00000494518 KLRC4-KLRK1H3BQV0 150 aa11.78□□□□□ -0.52
SKA1-205ENST00000494518 WDR47O94967 919 aa11.78□□□□□ -0.52
SKA1-205ENST00000494518 ENO2P09104 434 aaPredicted RBP11.78□□□□□ -0.52
SKA1-205ENST00000494518 TFEBP19484 476 aa11.78□□□□□ -0.52
SKA1-205ENST00000494518 HNRNPH1P31943 449 aaKnown RBP11.78□□□□□ -0.52
SKA1-205ENST00000494518 GDF5P43026 501 aa11.78□□□□□ -0.52
SKA1-205ENST00000494518 CLCN2P51788 898 aa11.78□□□□□ -0.52
SKA1-205ENST00000494518 RIPPLY3P57055 190 aa11.78□□□□□ -0.52
SKA1-205ENST00000494518 RUNX2Q13950 521 aa11.78□□□□□ -0.52
SKA1-205ENST00000494518 SLBPQ14493 270 aaKnown RBP eCLIP11.78□□□□□ -0.52
SKA1-205ENST00000494518 FBXO48Q5FWF7 155 aa11.78□□□□□ -0.52
SKA1-205ENST00000494518 NIPAL1Q6NVV3 410 aa11.78□□□□□ -0.52
SKA1-205ENST00000494518 ANKMY2Q8IV38 441 aa11.78□□□□□ -0.52
SKA1-205ENST00000494518 TRPV3Q8NET8 790 aa11.78□□□□□ -0.52
SKA1-205ENST00000494518 FAM57AQ8TBR7 257 aa11.78□□□□□ -0.52
SKA1-205ENST00000494518 FAR2Q96K12 515 aa11.78□□□□□ -0.52
SKA1-205ENST00000494518 SPOCK3Q9BQ16 436 aa11.78□□□□□ -0.52
SKA1-205ENST00000494518 UCK2Q9BZX2 261 aa11.78□□□□□ -0.52
SKA1-205ENST00000494518 TRIM45Q9H8W5 580 aaPredicted RBP11.78□□□□□ -0.52
SKA1-205ENST00000494518 PRTFDC1Q9NRG1 225 aa11.78□□□□□ -0.52
SKA1-205ENST00000494518 ERVK-11Q9UQG0 969 aa11.78□□□□□ -0.52
SKA1-205ENST00000494518 NF1P21359 2839 aa11.78□□□□□ -0.52
SKA1-205ENST00000494518 ARHGAP21Q5T5U3 1957 aa11.78□□□□□ -0.52
SKA1-205ENST00000494518 NAV3Q8IVL0 2385 aa11.77□□□□□ -0.52
SKA1-205ENST00000494518 FAM95CA0A1B0GW59 222 aa11.77□□□□□ -0.53
SKA1-205ENST00000494518 NCF1BA6NI72 391 aaPredicted RBP11.77□□□□□ -0.53
SKA1-205ENST00000494518 NCF1CA8MVU1 366 aaPredicted RBP11.77□□□□□ -0.53
SKA1-205ENST00000494518 ERI3O43414 337 aaKnown RBP11.77□□□□□ -0.53
SKA1-205ENST00000494518 SERPINA6P08185 405 aa11.77□□□□□ -0.53
SKA1-205ENST00000494518 NCF1P14598 390 aaPredicted RBP11.77□□□□□ -0.53
SKA1-205ENST00000494518 ZNF37AP17032 561 aaPredicted RBP11.77□□□□□ -0.53
SKA1-205ENST00000494518 SLC13A2Q13183 592 aa11.77□□□□□ -0.53
SKA1-205ENST00000494518 TSNQ15631 228 aaKnown RBP11.77□□□□□ -0.53
SKA1-205ENST00000494518 ADNP2Q6IQ32 1131 aa11.77□□□□□ -0.53
SKA1-205ENST00000494518 FRA10AC1Q70Z53 315 aa11.77□□□□□ -0.53
SKA1-205ENST00000494518 GALNT7Q86SF2 657 aa11.77□□□□□ -0.53
SKA1-205ENST00000494518 CCDC71Q8IV32 467 aaPredicted RBP11.77□□□□□ -0.53
SKA1-205ENST00000494518 POGLUT1Q8NBL1 392 aa11.77□□□□□ -0.53
SKA1-205ENST00000494518 ACTRT1Q8TDG2 376 aa11.77□□□□□ -0.53
SKA1-205ENST00000494518 GAL3ST3Q96A11 431 aa11.77□□□□□ -0.53
SKA1-205ENST00000494518 C14orf79Q96F83 325 aa11.77□□□□□ -0.53
SKA1-205ENST00000494518 VMP1Q96GC9 406 aa11.77□□□□□ -0.53
SKA1-205ENST00000494518 CSF3RQ99062 836 aa11.77□□□□□ -0.53
SKA1-205ENST00000494518 NAT9Q9BTE0 207 aa11.77□□□□□ -0.53
SKA1-205ENST00000494518 ENKD1Q9H0I2 346 aa11.77□□□□□ -0.53
SKA1-205ENST00000494518 MCCC2Q9HCC0 563 aa11.77□□□□□ -0.53
SKA1-205ENST00000494518 DEPPQ9NTK1 212 aa11.77□□□□□ -0.53
SKA1-205ENST00000494518 RNF6Q9Y252 685 aa11.77□□□□□ -0.53
SKA1-205ENST00000494518 MMACHCQ9Y4U1 282 aa11.77□□□□□ -0.53
SKA1-205ENST00000494518 KCNE2Q9Y6J6 123 aa11.77□□□□□ -0.53
SKA1-205ENST00000494518 ACANP16112 2415 aa11.76□□□□□ -0.53
SKA1-205ENST00000494518 PIAS1O75925 651 aa11.76□□□□□ -0.53
SKA1-205ENST00000494518 OR2J2O76002 312 aa11.76□□□□□ -0.53
SKA1-205ENST00000494518 OR6B1O95007 311 aa11.76□□□□□ -0.53
SKA1-205ENST00000494518 IVDP26440 423 aa11.76□□□□□ -0.53
SKA1-205ENST00000494518 CERS1P27544 350 aa11.76□□□□□ -0.53
SKA1-205ENST00000494518 SSR4P51571 173 aa11.76□□□□□ -0.53
SKA1-205ENST00000494518 PLA2G16P53816 162 aa11.76□□□□□ -0.53
SKA1-205ENST00000494518 RAB38P57729 211 aa11.76□□□□□ -0.53
SKA1-205ENST00000494518 TAS2R39P59534 338 aa11.76□□□□□ -0.53
SKA1-205ENST00000494518 STXBP1P61764 594 aaKnown RBP11.76□□□□□ -0.53
SKA1-205ENST00000494518 PLGLB1Q02325 96 aa11.76□□□□□ -0.53
SKA1-205ENST00000494518 XKR6Q5GH73 641 aa11.76□□□□□ -0.53
SKA1-205ENST00000494518 IL20RBQ6UXL0 311 aa11.76□□□□□ -0.53
SKA1-205ENST00000494518 CAPN12Q6ZSI9 719 aa11.76□□□□□ -0.53
SKA1-205ENST00000494518 SCUBE1Q8IWY4 988 aa11.76□□□□□ -0.53
SKA1-205ENST00000494518 KLHL7Q8IXQ5 586 aa11.76□□□□□ -0.53
SKA1-205ENST00000494518 KLHDC8AQ8IYD2 350 aa11.76□□□□□ -0.53
SKA1-205ENST00000494518 EID3Q8N140 333 aa11.76□□□□□ -0.53
SKA1-205ENST00000494518 PDIK1LQ8N165 341 aa11.76□□□□□ -0.53
SKA1-205ENST00000494518 SPATA6LQ8N4H0 392 aa11.76□□□□□ -0.53
SKA1-205ENST00000494518 OR5M9Q8NGP3 310 aa11.76□□□□□ -0.53
SKA1-205ENST00000494518 ANKRD49Q8WVL7 239 aa11.76□□□□□ -0.53
SKA1-205ENST00000494518 MS4A6EQ96DS6 147 aa11.76□□□□□ -0.53
SKA1-205ENST00000494518 PDLIM5Q96HC4 596 aaKnown RBP11.76□□□□□ -0.53
SKA1-205ENST00000494518 CCDC77Q9BR77 488 aa11.76□□□□□ -0.53
SKA1-205ENST00000494518 TIMMDC1Q9NPL8 285 aa11.76□□□□□ -0.53
SKA1-205ENST00000494518 NPDC1Q9NQX5 325 aaPredicted RBP11.76□□□□□ -0.53
SKA1-205ENST00000494518 TNFRSF10DQ9UBN6 386 aa11.76□□□□□ -0.53
SKA1-205ENST00000494518 CTNNAL1Q9UBT7 734 aa11.76□□□□□ -0.53
SKA1-205ENST00000494518 CORO1CQ9ULV4 474 aaPredicted RBP11.76□□□□□ -0.53
SKA1-205ENST00000494518 OARD1Q9Y530 152 aa11.76□□□□□ -0.53
SKA1-205ENST00000494518 CLDN16Q9Y5I7 305 aa11.76□□□□□ -0.53
SKA1-205ENST00000494518 LIPGQ9Y5X9 500 aa11.76□□□□□ -0.53
SKA1-205ENST00000494518 ZNF469Q96JG9 3925 aaPredicted RBP11.75□□□□□ -0.53
SKA1-205ENST00000494518 ABCA4P78363 2273 aa11.75□□□□□ -0.53
SKA1-205ENST00000494518 ANKHD1Q8IWZ3 2542 aaKnown RBP11.75□□□□□ -0.53
SKA1-205ENST00000494518 USP27XA6NNY8 438 aa11.75□□□□□ -0.53
SKA1-205ENST00000494518 A8MVJ9 347 aa11.75□□□□□ -0.53
SKA1-205ENST00000494518 NPIPA2E9PIF3 369 aa11.75□□□□□ -0.53
SKA1-205ENST00000494518 NPIPA3F8WFD2 350 aa11.75□□□□□ -0.53
SKA1-205ENST00000494518 WWP2O00308 870 aa11.75□□□□□ -0.53
SKA1-205ENST00000494518 B3GALT2O43825 422 aa11.75□□□□□ -0.53
SKA1-205ENST00000494518 H2AFYO75367 372 aaKnown RBP11.75□□□□□ -0.53
SKA1-205ENST00000494518 ZFAND5O76080 213 aa11.75□□□□□ -0.53
SKA1-205ENST00000494518 TUBB4AP04350 444 aa11.75□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms