RNA–Protein interactions for RNA: ENST00000493468.6

PRPF40A-211, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,043 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-211ENST00000493468 MTRF1LQ9UGC7 380 aaKnown RBP13.2□□□□□ -0.3
PRPF40A-211ENST00000493468 AMFRQ9UKV5 643 aa13.2□□□□□ -0.3
PRPF40A-211ENST00000493468 SOX13Q9UN79 622 aa13.2□□□□□ -0.3
PRPF40A-211ENST00000493468 DHRS7Q9Y394 339 aa13.2□□□□□ -0.3
PRPF40A-211ENST00000493468 ARID1AO14497 2285 aa13.2□□□□□ -0.3
PRPF40A-211ENST00000493468 URADA6NGE7 173 aa13.19□□□□□ -0.3
PRPF40A-211ENST00000493468 OR1F1O43749 312 aa13.19□□□□□ -0.3
PRPF40A-211ENST00000493468 PRKNO60260 465 aaPredicted RBP13.19□□□□□ -0.3
PRPF40A-211ENST00000493468 AVILO75366 819 aa13.19□□□□□ -0.3
PRPF40A-211ENST00000493468 B3GALT4O96024 378 aa13.19□□□□□ -0.3
PRPF40A-211ENST00000493468 NPPBP16860 134 aa13.19□□□□□ -0.3
PRPF40A-211ENST00000493468 ENDOUP21128 410 aaKnown RBP13.19□□□□□ -0.3
PRPF40A-211ENST00000493468 SOX3P41225 446 aa13.19□□□□□ -0.3
PRPF40A-211ENST00000493468 SORDQ00796 357 aa13.19□□□□□ -0.3
PRPF40A-211ENST00000493468 PCBP2Q15366 365 aaKnown RBP eCLIP13.19□□□□□ -0.3
PRPF40A-211ENST00000493468 FBXW10Q5XX13 1052 aa13.19□□□□□ -0.3
PRPF40A-211ENST00000493468 LRRC8EQ6NSJ5 796 aa13.19□□□□□ -0.3
PRPF40A-211ENST00000493468 AGTRAPQ6RW13 159 aa13.19□□□□□ -0.3
PRPF40A-211ENST00000493468 IL20RBQ6UXL0 311 aa13.19□□□□□ -0.3
PRPF40A-211ENST00000493468 RTL4Q6ZR62 310 aa13.19□□□□□ -0.3
PRPF40A-211ENST00000493468 PIWIL4Q7Z3Z4 852 aaKnown RBP13.19□□□□□ -0.3
PRPF40A-211ENST00000493468 PEX26Q7Z412 305 aa13.19□□□□□ -0.3
PRPF40A-211ENST00000493468 TBC1D19Q8N5T2 526 aa13.19□□□□□ -0.3
PRPF40A-211ENST00000493468 CCDC89Q8N998 374 aa13.19□□□□□ -0.3
PRPF40A-211ENST00000493468 CD200R1Q8TD46 325 aa13.19□□□□□ -0.3
PRPF40A-211ENST00000493468 SGCZQ96LD1 299 aa13.19□□□□□ -0.3
PRPF40A-211ENST00000493468 RASL10BQ96S79 203 aa13.19□□□□□ -0.3
PRPF40A-211ENST00000493468 SYBUQ9NX95 663 aa13.19□□□□□ -0.3
PRPF40A-211ENST00000493468 ZFP69BQ9UJL9 534 aa13.19□□□□□ -0.3
PRPF40A-211ENST00000493468 ZNF148Q9UQR1 794 aa13.19□□□□□ -0.3
PRPF40A-211ENST00000493468 NCKAP5O14513 1909 aa13.19□□□□□ -0.3
PRPF40A-211ENST00000493468 TRGV5A0A0B4J1U4 118 aa13.18□□□□□ -0.3
PRPF40A-211ENST00000493468 TUBAL3A6NHL2 446 aa13.18□□□□□ -0.3
PRPF40A-211ENST00000493468 SLC16A5O15375 505 aa13.18□□□□□ -0.3
PRPF40A-211ENST00000493468 ARHGEF9O43307 516 aa13.18□□□□□ -0.3
PRPF40A-211ENST00000493468 CELA3AP09093 270 aa13.18□□□□□ -0.3
PRPF40A-211ENST00000493468 SMIM10L1P0DMW3 83 aa13.18□□□□□ -0.3
PRPF40A-211ENST00000493468 ETS1P14921 441 aa13.18□□□□□ -0.3
PRPF40A-211ENST00000493468 MGAT1P26572 445 aa13.18□□□□□ -0.3
PRPF40A-211ENST00000493468 CEACAM8P31997 349 aaPredicted RBP13.18□□□□□ -0.3
PRPF40A-211ENST00000493468 AHRP35869 848 aa13.18□□□□□ -0.3
PRPF40A-211ENST00000493468 HYAL2Q12891 473 aa13.18□□□□□ -0.3
PRPF40A-211ENST00000493468 SP140Q13342 867 aa13.18□□□□□ -0.3
PRPF40A-211ENST00000493468 NAE1Q13564 534 aa13.18□□□□□ -0.3
PRPF40A-211ENST00000493468 SLC10A1Q14973 349 aa13.18□□□□□ -0.3
PRPF40A-211ENST00000493468 XKR6Q5GH73 641 aa13.18□□□□□ -0.3
PRPF40A-211ENST00000493468 HECTD2Q5U5R9 776 aa13.18□□□□□ -0.3
PRPF40A-211ENST00000493468 NEPROQ6NW34 567 aa13.18□□□□□ -0.3
PRPF40A-211ENST00000493468 CES3Q6UWW8 571 aa13.18□□□□□ -0.3
PRPF40A-211ENST00000493468 C4orf22Q6V702 233 aa13.18□□□□□ -0.3
PRPF40A-211ENST00000493468 SEM1Q6ZVN7 128 aa13.18□□□□□ -0.3
PRPF40A-211ENST00000493468 MAATS1Q7Z4T9 603 aa13.18□□□□□ -0.3
PRPF40A-211ENST00000493468 PRUNE1Q86TP1 453 aa13.18□□□□□ -0.3
PRPF40A-211ENST00000493468 CXorf67Q86X51 503 aaPredicted RBP13.18□□□□□ -0.3
PRPF40A-211ENST00000493468 KIF18BQ86Y91 864 aa13.18□□□□□ -0.3
PRPF40A-211ENST00000493468 LRRC75A-AS1Q8N1F1 130 aa13.18□□□□□ -0.3
PRPF40A-211ENST00000493468 CA13Q8N1Q1 262 aa13.18□□□□□ -0.3
PRPF40A-211ENST00000493468 LRRN4CLQ8ND94 238 aa13.18□□□□□ -0.3
PRPF40A-211ENST00000493468 SIMC1Q8NDZ2 872 aa13.18□□□□□ -0.3
PRPF40A-211ENST00000493468 SMIM10Q96HG1 83 aa13.18□□□□□ -0.3
PRPF40A-211ENST00000493468 CNPPD1Q9BV87 410 aa13.18□□□□□ -0.3
PRPF40A-211ENST00000493468 CCDC68Q9H2F9 335 aa13.18□□□□□ -0.3
PRPF40A-211ENST00000493468 LDAHQ9H6V9 325 aa13.18□□□□□ -0.3
PRPF40A-211ENST00000493468 ADAP2Q9NPF8 381 aa13.18□□□□□ -0.3
PRPF40A-211ENST00000493468 SACM1LQ9NTJ5 587 aa13.18□□□□□ -0.3
PRPF40A-211ENST00000493468 ZNF629Q9UEG4 869 aaPredicted RBP13.18□□□□□ -0.3
PRPF40A-211ENST00000493468 PDE10AQ9Y233 779 aa13.18□□□□□ -0.3
PRPF40A-211ENST00000493468 CLDN16Q9Y5I7 305 aa13.18□□□□□ -0.3
PRPF40A-211ENST00000493468 COMMD10Q9Y6G5 202 aa13.18□□□□□ -0.3
PRPF40A-211ENST00000493468 MXRA5Q9NR99 2828 aa13.18□□□□□ -0.3
PRPF40A-211ENST00000493468 ATP6AP2A0A1C7CYW4 349 aa13.17□□□□□ -0.3
PRPF40A-211ENST00000493468 CLCA1A8K7I4 914 aa13.17□□□□□ -0.3
PRPF40A-211ENST00000493468 ATP6AP2O75787 350 aa13.17□□□□□ -0.3
PRPF40A-211ENST00000493468 C8GP07360 202 aa13.17□□□□□ -0.3
PRPF40A-211ENST00000493468 PAMP19021 973 aa13.17□□□□□ -0.3
PRPF40A-211ENST00000493468 BMP5P22003 454 aa13.17□□□□□ -0.3
PRPF40A-211ENST00000493468 PCSK6P29122 969 aa13.17□□□□□ -0.3
PRPF40A-211ENST00000493468 RPL22P35268 128 aaKnown RBP13.17□□□□□ -0.3
PRPF40A-211ENST00000493468 SCTRP47872 440 aa13.17□□□□□ -0.3
PRPF40A-211ENST00000493468 HSD17B7P56937 341 aa13.17□□□□□ -0.3
PRPF40A-211ENST00000493468 ZNF470Q6ECI4 717 aa13.17□□□□□ -0.3
PRPF40A-211ENST00000493468 ZNF549Q6P9A3 640 aa13.17□□□□□ -0.3
PRPF40A-211ENST00000493468 POMZP3Q6PJE2 187 aa13.17□□□□□ -0.3
PRPF40A-211ENST00000493468 C16orf47Q6ZP98 133 aaPredicted RBP13.17□□□□□ -0.3
PRPF40A-211ENST00000493468 FAM47EQ6ZV65 393 aa13.17□□□□□ -0.3
PRPF40A-211ENST00000493468 CPNE9Q8IYJ1 553 aa13.17□□□□□ -0.3
PRPF40A-211ENST00000493468 ULK2Q8IYT8 1036 aa13.17□□□□□ -0.3
PRPF40A-211ENST00000493468 SYCE1Q8N0S2 351 aa13.17□□□□□ -0.3
PRPF40A-211ENST00000493468 GPATCH11Q8N954 259 aa13.17□□□□□ -0.3
PRPF40A-211ENST00000493468 NAXEQ8NCW5 288 aa13.17□□□□□ -0.3
PRPF40A-211ENST00000493468 SCYL1Q96KG9 808 aa13.17□□□□□ -0.3
PRPF40A-211ENST00000493468 GPR21Q99679 349 aa13.17□□□□□ -0.3
PRPF40A-211ENST00000493468 PARVBQ9HBI1 364 aa13.17□□□□□ -0.3
PRPF40A-211ENST00000493468 PNO1Q9NRX1 252 aaKnown RBP13.17□□□□□ -0.3
PRPF40A-211ENST00000493468 SPRR3Q9UBC9 169 aa13.17□□□□□ -0.3
PRPF40A-211ENST00000493468 PACSIN2Q9UNF0 486 aaPredicted RBP13.17□□□□□ -0.3
PRPF40A-211ENST00000493468 FREM3P0C091 2139 aa13.16□□□□□ -0.3
PRPF40A-211ENST00000493468 G3V3Y1 287 aa13.16□□□□□ -0.3
PRPF40A-211ENST00000493468 SERPIND1P05546 499 aa13.16□□□□□ -0.3
PRPF40A-211ENST00000493468 TIMP3P35625 211 aa13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms