RNA–Protein interactions for RNA: ENST00000489403.1

CPSF3-204, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 5

Gene CPSF3, Length 688 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-204ENST00000489403 GDF5P43026 501 aa11.54□□□□□ -0.56
CPSF3-204ENST00000489403 SLC6A12P48065 614 aa11.54□□□□□ -0.56
CPSF3-204ENST00000489403 SSR4P51571 173 aa11.54□□□□□ -0.56
CPSF3-204ENST00000489403 GPR143P51810 404 aa11.54□□□□□ -0.56
CPSF3-204ENST00000489403 SLBPQ14493 270 aaKnown RBP eCLIP11.54□□□□□ -0.56
CPSF3-204ENST00000489403 C16orf47Q6ZP98 133 aaPredicted RBP11.54□□□□□ -0.56
CPSF3-204ENST00000489403 SLCO4C1Q6ZQN7 724 aa11.54□□□□□ -0.56
CPSF3-204ENST00000489403 CDH24Q86UP0 819 aa11.54□□□□□ -0.56
CPSF3-204ENST00000489403 ZC3HC1Q86WB0 502 aaKnown RBP11.54□□□□□ -0.56
CPSF3-204ENST00000489403 KLHDC8AQ8IYD2 350 aa11.54□□□□□ -0.56
CPSF3-204ENST00000489403 PDIK1LQ8N165 341 aa11.54□□□□□ -0.56
CPSF3-204ENST00000489403 RPRMLQ8N4K4 120 aa11.54□□□□□ -0.56
CPSF3-204ENST00000489403 NKAPQ8N5F7 415 aaKnown RBP11.54□□□□□ -0.56
CPSF3-204ENST00000489403 FAM47BQ8NA70 645 aa11.54□□□□□ -0.56
CPSF3-204ENST00000489403 TTLQ8NG68 377 aa11.54□□□□□ -0.56
CPSF3-204ENST00000489403 ANKRD49Q8WVL7 239 aa11.54□□□□□ -0.56
CPSF3-204ENST00000489403 ANKRD7Q92527 254 aa11.54□□□□□ -0.56
CPSF3-204ENST00000489403 MS4A6EQ96DS6 147 aa11.54□□□□□ -0.56
CPSF3-204ENST00000489403 FAR2Q96K12 515 aa11.54□□□□□ -0.56
CPSF3-204ENST00000489403 NPLQ9BXD5 320 aaPredicted RBP11.54□□□□□ -0.56
CPSF3-204ENST00000489403 LIN28AQ9H9Z2 209 aaKnown RBP11.54□□□□□ -0.56
CPSF3-204ENST00000489403 MCCC2Q9HCC0 563 aa11.54□□□□□ -0.56
CPSF3-204ENST00000489403 PRTFDC1Q9NRG1 225 aa11.54□□□□□ -0.56
CPSF3-204ENST00000489403 DEPPQ9NTK1 212 aa11.54□□□□□ -0.56
CPSF3-204ENST00000489403 KCMF1Q9P0J7 381 aa11.54□□□□□ -0.56
CPSF3-204ENST00000489403 SNX12Q9UMY4 172 aa11.54□□□□□ -0.56
CPSF3-204ENST00000489403 PINLYPA6NC86 204 aa11.53□□□□□ -0.56
CPSF3-204ENST00000489403 LRIT2A6NDA9 550 aa11.53□□□□□ -0.56
CPSF3-204ENST00000489403 A8MVJ9 347 aa11.53□□□□□ -0.56
CPSF3-204ENST00000489403 ZFAND5O76080 213 aa11.53□□□□□ -0.56
CPSF3-204ENST00000489403 TBX6O95947 436 aaPredicted RBP11.53□□□□□ -0.56
CPSF3-204ENST00000489403 GNAZP19086 355 aa11.53□□□□□ -0.56
CPSF3-204ENST00000489403 HNMTP50135 292 aa11.53□□□□□ -0.56
CPSF3-204ENST00000489403 HSD17B7P56937 341 aa11.53□□□□□ -0.56
CPSF3-204ENST00000489403 TAS2R39P59534 338 aa11.53□□□□□ -0.56
CPSF3-204ENST00000489403 TFF3Q07654 80 aa11.53□□□□□ -0.56
CPSF3-204ENST00000489403 SLC13A2Q13183 592 aa11.53□□□□□ -0.56
CPSF3-204ENST00000489403 FRG1Q14331 258 aaKnown RBP11.53□□□□□ -0.56
CPSF3-204ENST00000489403 MORF4L2Q15014 288 aa11.53□□□□□ -0.56
CPSF3-204ENST00000489403 TSNQ15631 228 aaKnown RBP11.53□□□□□ -0.56
CPSF3-204ENST00000489403 TMEM211Q6ICI0 200 aa11.53□□□□□ -0.56
CPSF3-204ENST00000489403 ARHGAP11AQ6P4F7 1023 aa11.53□□□□□ -0.56
CPSF3-204ENST00000489403 TMIGD1Q6UXZ0 262 aa11.53□□□□□ -0.56
CPSF3-204ENST00000489403 FRA10AC1Q70Z53 315 aa11.53□□□□□ -0.56
CPSF3-204ENST00000489403 PSD4Q8NDX1 1056 aa11.53□□□□□ -0.56
CPSF3-204ENST00000489403 CCT6BQ92526 530 aa11.53□□□□□ -0.56
CPSF3-204ENST00000489403 RHBDF1Q96CC6 855 aa11.53□□□□□ -0.56
CPSF3-204ENST00000489403 LRRC39Q96DD0 335 aa11.53□□□□□ -0.56
CPSF3-204ENST00000489403 QRFPRQ96P65 431 aa11.53□□□□□ -0.56
CPSF3-204ENST00000489403 CSF3RQ99062 836 aa11.53□□□□□ -0.56
CPSF3-204ENST00000489403 CCDC77Q9BR77 488 aa11.53□□□□□ -0.56
CPSF3-204ENST00000489403 TP63Q9H3D4 680 aaPredicted RBP11.53□□□□□ -0.56
CPSF3-204ENST00000489403 ADAP2Q9NPF8 381 aa11.53□□□□□ -0.56
CPSF3-204ENST00000489403 TIMMDC1Q9NPL8 285 aa11.53□□□□□ -0.56
CPSF3-204ENST00000489403 NPDC1Q9NQX5 325 aaPredicted RBP11.53□□□□□ -0.56
CPSF3-204ENST00000489403 HPF1Q9NWY4 346 aa11.53□□□□□ -0.56
CPSF3-204ENST00000489403 RNF6Q9Y252 685 aa11.53□□□□□ -0.56
CPSF3-204ENST00000489403 YARS2Q9Y2Z4 477 aaKnown RBP11.53□□□□□ -0.56
CPSF3-204ENST00000489403 PHF3Q92576 2039 aaKnown RBP11.53□□□□□ -0.56
CPSF3-204ENST00000489403 TACC2O95359 2948 aa11.53□□□□□ -0.56
CPSF3-204ENST00000489403 NKX2-6A6NCS4 301 aa11.52□□□□□ -0.57
CPSF3-204ENST00000489403 NCF1BA6NI72 391 aaPredicted RBP11.52□□□□□ -0.57
CPSF3-204ENST00000489403 FAM90A27PA6NNH2 459 aa11.52□□□□□ -0.57
CPSF3-204ENST00000489403 NCF1CA8MVU1 366 aaPredicted RBP11.52□□□□□ -0.57
CPSF3-204ENST00000489403 CYR61O00622 381 aa11.52□□□□□ -0.57
CPSF3-204ENST00000489403 CLDN4O14493 209 aa11.52□□□□□ -0.57
CPSF3-204ENST00000489403 FANCGO15287 622 aa11.52□□□□□ -0.57
CPSF3-204ENST00000489403 B3GALT2O43825 422 aa11.52□□□□□ -0.57
CPSF3-204ENST00000489403 OR2J2O76002 312 aa11.52□□□□□ -0.57
CPSF3-204ENST00000489403 OR6B1O95007 311 aa11.52□□□□□ -0.57
CPSF3-204ENST00000489403 TUBB4AP04350 444 aa11.52□□□□□ -0.57
CPSF3-204ENST00000489403 NCF1P14598 390 aaPredicted RBP11.52□□□□□ -0.57
CPSF3-204ENST00000489403 GSTM2P28161 218 aa11.52□□□□□ -0.57
CPSF3-204ENST00000489403 CHRNB4P30926 498 aa11.52□□□□□ -0.57
CPSF3-204ENST00000489403 PLA2G16P53816 162 aa11.52□□□□□ -0.57
CPSF3-204ENST00000489403 LIM2P55344 173 aa11.52□□□□□ -0.57
CPSF3-204ENST00000489403 MGAT5Q09328 741 aa11.52□□□□□ -0.57
CPSF3-204ENST00000489403 TGFBIQ15582 683 aa11.52□□□□□ -0.57
CPSF3-204ENST00000489403 ADPRMQ3LIE5 342 aa11.52□□□□□ -0.57
CPSF3-204ENST00000489403 XKR6Q5GH73 641 aa11.52□□□□□ -0.57
CPSF3-204ENST00000489403 EMC4Q5J8M3 183 aa11.52□□□□□ -0.57
CPSF3-204ENST00000489403 ADNP2Q6IQ32 1131 aa11.52□□□□□ -0.57
CPSF3-204ENST00000489403 IL20RBQ6UXL0 311 aa11.52□□□□□ -0.57
CPSF3-204ENST00000489403 VN1R5Q7Z5H4 357 aa11.52□□□□□ -0.57
CPSF3-204ENST00000489403 CLNKQ7Z7G1 428 aa11.52□□□□□ -0.57
CPSF3-204ENST00000489403 ADAMTSL2Q86TH1 951 aa11.52□□□□□ -0.57
CPSF3-204ENST00000489403 ANKMY2Q8IV38 441 aa11.52□□□□□ -0.57
CPSF3-204ENST00000489403 GPALPP1Q8IXQ4 340 aa11.52□□□□□ -0.57
CPSF3-204ENST00000489403 ZNF595Q8IYB9 648 aa11.52□□□□□ -0.57
CPSF3-204ENST00000489403 OR2M7Q8NG81 312 aa11.52□□□□□ -0.57
CPSF3-204ENST00000489403 ASB5Q8WWX0 329 aa11.52□□□□□ -0.57
CPSF3-204ENST00000489403 RASL10BQ96S79 203 aa11.52□□□□□ -0.57
CPSF3-204ENST00000489403 TMEM79Q9BSE2 394 aa11.52□□□□□ -0.57
CPSF3-204ENST00000489403 UCK2Q9BZX2 261 aa11.52□□□□□ -0.57
CPSF3-204ENST00000489403 REXO4Q9GZR2 422 aaKnown RBP11.52□□□□□ -0.57
CPSF3-204ENST00000489403 DEFB127Q9H1M4 99 aa11.52□□□□□ -0.57
CPSF3-204ENST00000489403 MYOTQ9UBF9 498 aa11.52□□□□□ -0.57
CPSF3-204ENST00000489403 CTNNAL1Q9UBT7 734 aa11.52□□□□□ -0.57
CPSF3-204ENST00000489403 ERVK-11Q9UQG0 969 aa11.52□□□□□ -0.57
CPSF3-204ENST00000489403 MRPS33Q9Y291 106 aaKnown RBP11.52□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms