RNA–Protein interactions for RNA: ENST00000488520.5

USP4-213, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 1,155 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-213ENST00000488520 CRB2Q5IJ48 1285 aa8.3□□□□□ -1.08
USP4-213ENST00000488520 DCAF10Q5QP82 559 aa8.3□□□□□ -1.08
USP4-213ENST00000488520 PRAMEF13Q5VWM6 474 aa8.3□□□□□ -1.08
USP4-213ENST00000488520 METTL2BQ6P1Q9 378 aaKnown RBP8.3□□□□□ -1.08
USP4-213ENST00000488520 FIGLAQ6QHK4 219 aa8.3□□□□□ -1.08
USP4-213ENST00000488520 LCTLQ6UWM7 567 aa8.3□□□□□ -1.08
USP4-213ENST00000488520 MBOAT1Q6ZNC8 495 aa8.3□□□□□ -1.08
USP4-213ENST00000488520 MRGPREQ86SM8 312 aa8.3□□□□□ -1.08
USP4-213ENST00000488520 SLC34A3Q8N130 599 aa8.3□□□□□ -1.08
USP4-213ENST00000488520 PTGR2Q8N8N7 351 aaPredicted RBP8.3□□□□□ -1.08
USP4-213ENST00000488520 BANPQ8N9N5 519 aa8.3□□□□□ -1.08
USP4-213ENST00000488520 LMNTD1Q8N9Z9 388 aa8.3□□□□□ -1.08
USP4-213ENST00000488520 TCP10LQ8TDR4 215 aa8.3□□□□□ -1.08
USP4-213ENST00000488520 MZB1Q8WU39 189 aa8.3□□□□□ -1.08
USP4-213ENST00000488520 PYCR2Q96C36 320 aa8.3□□□□□ -1.08
USP4-213ENST00000488520 FER1L6-AS2Q96M78 137 aa8.3□□□□□ -1.08
USP4-213ENST00000488520 GPR78Q96P69 363 aa8.3□□□□□ -1.08
USP4-213ENST00000488520 OR2A14Q96R47 310 aa8.3□□□□□ -1.08
USP4-213ENST00000488520 ATOH8Q96SQ7 321 aa8.3□□□□□ -1.08
USP4-213ENST00000488520 SSU72Q9NP77 194 aaKnown RBP8.3□□□□□ -1.08
USP4-213ENST00000488520 AGPAT4Q9NRZ5 378 aa8.3□□□□□ -1.08
USP4-213ENST00000488520 TMEM184CQ9NVA4 438 aa8.3□□□□□ -1.08
USP4-213ENST00000488520 DNAJC11Q9NVH1 559 aa8.3□□□□□ -1.08
USP4-213ENST00000488520 IRAK4Q9NWZ3 460 aa8.3□□□□□ -1.08
USP4-213ENST00000488520 SPHK1Q9NYA1 384 aa8.3□□□□□ -1.08
USP4-213ENST00000488520 XPR1Q9UBH6 696 aa8.3□□□□□ -1.08
USP4-213ENST00000488520 TAC3Q9UHF0 121 aa8.3□□□□□ -1.08
USP4-213ENST00000488520 PTBP2Q9UKA9 531 aaKnown RBP8.3□□□□□ -1.08
USP4-213ENST00000488520 POMT2Q9UKY4 750 aa8.3□□□□□ -1.08
USP4-213ENST00000488520 SLC22A14Q9Y267 594 aa8.3□□□□□ -1.08
USP4-213ENST00000488520 PADI2Q9Y2J8 665 aa8.3□□□□□ -1.08
USP4-213ENST00000488520 PLLPQ9Y342 182 aa8.3□□□□□ -1.08
USP4-213ENST00000488520 ITPR3Q14573 2671 aa8.29□□□□□ -1.08
USP4-213ENST00000488520 MEGF11A6BM72 1044 aa8.29□□□□□ -1.08
USP4-213ENST00000488520 HMGB1P1B2RPK0 211 aaPredicted RBP8.29□□□□□ -1.08
USP4-213ENST00000488520 K7EPI3 171 aa8.29□□□□□ -1.08
USP4-213ENST00000488520 TM9SF1O15321 606 aa8.29□□□□□ -1.08
USP4-213ENST00000488520 SUPT7LO94864 414 aa8.29□□□□□ -1.08
USP4-213ENST00000488520 NPPBP16860 134 aa8.29□□□□□ -1.08
USP4-213ENST00000488520 FSTP19883 344 aa8.29□□□□□ -1.08
USP4-213ENST00000488520 IMPDH1P20839 514 aa8.29□□□□□ -1.08
USP4-213ENST00000488520 GGT5P36269 586 aa8.29□□□□□ -1.08
USP4-213ENST00000488520 FOLR3P41439 243 aa8.29□□□□□ -1.08
USP4-213ENST00000488520 GDF5P43026 501 aa8.29□□□□□ -1.08
USP4-213ENST00000488520 CCR8P51685 355 aa8.29□□□□□ -1.08
USP4-213ENST00000488520 PRKAA2P54646 552 aa8.29□□□□□ -1.08
USP4-213ENST00000488520 TBPL1P62380 186 aa8.29□□□□□ -1.08
USP4-213ENST00000488520 PCDH1Q08174 1060 aa8.29□□□□□ -1.08
USP4-213ENST00000488520 LAPTM5Q13571 262 aa8.29□□□□□ -1.08
USP4-213ENST00000488520 RBBP7Q16576 425 aa8.29□□□□□ -1.08
USP4-213ENST00000488520 PDK4Q16654 411 aa8.29□□□□□ -1.08
USP4-213ENST00000488520 PPP1R3AQ16821 1122 aa8.29□□□□□ -1.08
USP4-213ENST00000488520 DEFB110Q30KQ9 67 aa8.29□□□□□ -1.08
USP4-213ENST00000488520 XP32Q5T750 250 aa8.29□□□□□ -1.08
USP4-213ENST00000488520 ICE2Q659A1 982 aa8.29□□□□□ -1.08
USP4-213ENST00000488520 FDX2Q6P4F2 183 aa8.29□□□□□ -1.08
USP4-213ENST00000488520 Q6ZS92 163 aa8.29□□□□□ -1.08
USP4-213ENST00000488520 LRRC70Q7Z2Q7 622 aa8.29□□□□□ -1.08
USP4-213ENST00000488520 FJX1Q86VR8 437 aa8.29□□□□□ -1.08
USP4-213ENST00000488520 NUDCD3Q8IVD9 361 aa8.29□□□□□ -1.08
USP4-213ENST00000488520 HOMEZQ8IX15 550 aa8.29□□□□□ -1.08
USP4-213ENST00000488520 MCEMP1Q8IX19 187 aa8.29□□□□□ -1.08
USP4-213ENST00000488520 GPR135Q8IZ08 494 aa8.29□□□□□ -1.08
USP4-213ENST00000488520 KRT78Q8N1N4 520 aa8.29□□□□□ -1.08
USP4-213ENST00000488520 TEX9Q8N6V9 391 aa8.29□□□□□ -1.08
USP4-213ENST00000488520 ZNF655Q8N720 491 aaPredicted RBP8.29□□□□□ -1.08
USP4-213ENST00000488520 CCNYL1Q8N7R7 359 aa8.29□□□□□ -1.08
USP4-213ENST00000488520 LINC01555Q8NAE3 123 aa8.29□□□□□ -1.08
USP4-213ENST00000488520 PDPRQ8NCN5 879 aa8.29□□□□□ -1.08
USP4-213ENST00000488520 ST6GALNAC3Q8NDV1 305 aa8.29□□□□□ -1.08
USP4-213ENST00000488520 OR56A3Q8NH54 315 aa8.29□□□□□ -1.08
USP4-213ENST00000488520 GRHL3Q8TE85 626 aa8.29□□□□□ -1.08
USP4-213ENST00000488520 DENND1AQ8TEH3 1009 aa8.29□□□□□ -1.08
USP4-213ENST00000488520 RERGQ96A58 199 aaPredicted RBP8.29□□□□□ -1.08
USP4-213ENST00000488520 ATP6V1G3Q96LB4 118 aa8.29□□□□□ -1.08
USP4-213ENST00000488520 FAM111AQ96PZ2 611 aa8.29□□□□□ -1.08
USP4-213ENST00000488520 TRAPPC9Q96Q05 1148 aa8.29□□□□□ -1.08
USP4-213ENST00000488520 SELENOSQ9BQE4 189 aa8.29□□□□□ -1.08
USP4-213ENST00000488520 DRC3Q9H069 523 aa8.29□□□□□ -1.08
USP4-213ENST00000488520 P4HTMQ9NXG6 502 aa8.29□□□□□ -1.08
USP4-213ENST00000488520 EURLQ9NYK6 297 aa8.29□□□□□ -1.08
USP4-213ENST00000488520 GPRC5BQ9NZH0 403 aa8.29□□□□□ -1.08
USP4-213ENST00000488520 NDOR1Q9UHB4 597 aa8.29□□□□□ -1.08
USP4-213ENST00000488520 IKZF3Q9UKT9 509 aa8.29□□□□□ -1.08
USP4-213ENST00000488520 HIVEP1P15822 2718 aa8.29□□□□□ -1.08
USP4-213ENST00000488520 LOC100289279A0A1B0GTE1 492 aa8.28□□□□□ -1.08
USP4-213ENST00000488520 KRT87PA6NCN2 255 aa8.28□□□□□ -1.08
USP4-213ENST00000488520 STX16-NPEPL1H3BU86 382 aa8.28□□□□□ -1.08
USP4-213ENST00000488520 H7BY64 318 aa8.28□□□□□ -1.08
USP4-213ENST00000488520 STX16O14662 325 aa8.28□□□□□ -1.08
USP4-213ENST00000488520 TAPBPO15533 448 aa8.28□□□□□ -1.08
USP4-213ENST00000488520 HCRTR1O43613 425 aa8.28□□□□□ -1.08
USP4-213ENST00000488520 PLIN3O60664 434 aa8.28□□□□□ -1.08
USP4-213ENST00000488520 TRIM13O60858 407 aa8.28□□□□□ -1.08
USP4-213ENST00000488520 CNOT3O75175 753 aaKnown RBP8.28□□□□□ -1.08
USP4-213ENST00000488520 CRCPO75575 148 aa8.28□□□□□ -1.08
USP4-213ENST00000488520 CTSBP07858 339 aa8.28□□□□□ -1.08
USP4-213ENST00000488520 SNRPB2P08579 225 aaKnown RBP8.28□□□□□ -1.08
USP4-213ENST00000488520 C1GALT1C1LP0DN25 315 aa8.28□□□□□ -1.08
USP4-213ENST00000488520 ERGP11308 486 aa8.28□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms