RNA–Protein interactions for RNA: ENST00000487017.5

COL7A1-210, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 5,807 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-210ENST00000487017 TMEM5Q9Y2B1 443 aa15.85■□□□□ 0.13
COL7A1-210ENST00000487017 G3V2L1 256 aa15.85■□□□□ 0.13
COL7A1-210ENST00000487017 SLC6A6P31641 620 aa15.85■□□□□ 0.13
COL7A1-210ENST00000487017 CARM1Q86X55 608 aa15.85■□□□□ 0.13
COL7A1-210ENST00000487017 Q9N2J8 555 aa15.85■□□□□ 0.13
COL7A1-210ENST00000487017 POLE4Q9NR33 117 aa15.85■□□□□ 0.13
COL7A1-210ENST00000487017 HCN2Q9UL51 889 aa15.85■□□□□ 0.13
COL7A1-210ENST00000487017 KAT6AQ92794 2004 aa15.84■□□□□ 0.13
COL7A1-210ENST00000487017 FXYD6-FXYD2A0A087WZ82 144 aa15.84■□□□□ 0.13
COL7A1-210ENST00000487017 LEFTY2O00292 366 aa15.84■□□□□ 0.13
COL7A1-210ENST00000487017 OR5P2Q8WZ92 322 aa15.84■□□□□ 0.13
COL7A1-210ENST00000487017 FXYD6Q9H0Q3 95 aa15.84■□□□□ 0.13
COL7A1-210ENST00000487017 HCN3Q9P1Z3 774 aa15.84■□□□□ 0.13
COL7A1-210ENST00000487017 HSD3B1P14060 373 aa15.84■□□□□ 0.13
COL7A1-210ENST00000487017 HSD3B2P26439 372 aa15.84■□□□□ 0.13
COL7A1-210ENST00000487017 MAN2A2P49641 1150 aa15.84■□□□□ 0.13
COL7A1-210ENST00000487017 NRG3P56975 720 aa15.84■□□□□ 0.13
COL7A1-210ENST00000487017 MEF2AQ02078 507 aaPredicted RBP15.84■□□□□ 0.13
COL7A1-210ENST00000487017 PSAPL1Q6NUJ1 521 aa15.84■□□□□ 0.13
COL7A1-210ENST00000487017 CNKSR3Q6P9H4 555 aa15.84■□□□□ 0.13
COL7A1-210ENST00000487017 ZSWIM9Q86XI8 627 aa15.84■□□□□ 0.13
COL7A1-210ENST00000487017 MYRFLQ96LU7 910 aa15.84■□□□□ 0.13
COL7A1-210ENST00000487017 SH3PXD2BA1X283 911 aa15.84■□□□□ 0.13
COL7A1-210ENST00000487017 PCDHGA12O60330 932 aa15.84■□□□□ 0.13
COL7A1-210ENST00000487017 GGT1P19440 569 aa15.84■□□□□ 0.13
COL7A1-210ENST00000487017 TIA1P31483 386 aaKnown RBP eCLIP15.84■□□□□ 0.13
COL7A1-210ENST00000487017 AMZ1Q400G9 498 aa15.84■□□□□ 0.13
COL7A1-210ENST00000487017 CMTR2Q8IYT2 770 aaKnown RBP15.84■□□□□ 0.13
COL7A1-210ENST00000487017 LGALS12Q96DT0 336 aa15.84■□□□□ 0.13
COL7A1-210ENST00000487017 SMURF1Q9HCE7 757 aa15.84■□□□□ 0.13
COL7A1-210ENST00000487017 WNT6Q9Y6F9 365 aa15.84■□□□□ 0.13
COL7A1-210ENST00000487017 CDH10Q9Y6N8 788 aa15.84■□□□□ 0.13
COL7A1-210ENST00000487017 UNCXA6NJT0 531 aa15.84■□□□□ 0.13
COL7A1-210ENST00000487017 PROM1O43490 865 aa15.84■□□□□ 0.13
COL7A1-210ENST00000487017 DEFA5Q01523 94 aa15.84■□□□□ 0.13
COL7A1-210ENST00000487017 GALNT1Q10472 559 aaPredicted RBP15.84■□□□□ 0.13
COL7A1-210ENST00000487017 ARFRP1Q13795 201 aa15.84■□□□□ 0.13
COL7A1-210ENST00000487017 MAPK14Q16539 360 aa15.84■□□□□ 0.13
COL7A1-210ENST00000487017 Q6ZVL8 140 aa15.84■□□□□ 0.13
COL7A1-210ENST00000487017 EGFL6Q8IUX8 553 aa15.84■□□□□ 0.13
COL7A1-210ENST00000487017 RNF121Q9H920 327 aa15.84■□□□□ 0.13
COL7A1-210ENST00000487017 WDR45Q9Y484 360 aa15.84■□□□□ 0.13
COL7A1-210ENST00000487017 HSPB11Q9Y547 144 aa15.84■□□□□ 0.13
COL7A1-210ENST00000487017 HSPE1-MOB4S4R3N1 261 aa15.84■□□□□ 0.13
COL7A1-210ENST00000487017 SCDO00767 359 aa15.83■□□□□ 0.13
COL7A1-210ENST00000487017 GSTM2P28161 218 aa15.83■□□□□ 0.13
COL7A1-210ENST00000487017 NOVP48745 357 aa15.83■□□□□ 0.13
COL7A1-210ENST00000487017 GHRHRQ02643 423 aa15.83■□□□□ 0.13
COL7A1-210ENST00000487017 SCGB2B2Q4G0G5 96 aa15.83■□□□□ 0.13
COL7A1-210ENST00000487017 DNM1P34Q6PK57 102 aa15.83■□□□□ 0.13
COL7A1-210ENST00000487017 NPWQ8N729 165 aa15.83■□□□□ 0.13
COL7A1-210ENST00000487017 PSD4Q8NDX1 1056 aa15.83■□□□□ 0.13
COL7A1-210ENST00000487017 CAPNS2Q96L46 248 aa15.83■□□□□ 0.13
COL7A1-210ENST00000487017 MCHR1Q99705 422 aa15.83■□□□□ 0.13
COL7A1-210ENST00000487017 MCCC2Q9HCC0 563 aa15.83■□□□□ 0.13
COL7A1-210ENST00000487017 CSF2P04141 144 aa15.83■□□□□ 0.12
COL7A1-210ENST00000487017 BMP2P12643 396 aa15.83■□□□□ 0.12
COL7A1-210ENST00000487017 MAPK3P27361 379 aaPredicted RBP15.83■□□□□ 0.12
COL7A1-210ENST00000487017 RPL6Q02878 288 aaKnown RBP15.83■□□□□ 0.12
COL7A1-210ENST00000487017 CLCA4Q14CN2 919 aa15.83■□□□□ 0.12
COL7A1-210ENST00000487017 TBRG1Q3YBR2 411 aa15.83■□□□□ 0.12
COL7A1-210ENST00000487017 CRYGNQ8WXF5 182 aa15.83■□□□□ 0.12
COL7A1-210ENST00000487017 S100A16Q96FQ6 103 aaKnown RBP15.83■□□□□ 0.12
COL7A1-210ENST00000487017 GMLQ99445 158 aa15.83■□□□□ 0.12
COL7A1-210ENST00000487017 CENPMQ9NSP4 180 aa15.83■□□□□ 0.12
COL7A1-210ENST00000487017 ZCWPW2A0A1B0GU75 182 aa15.83■□□□□ 0.12
COL7A1-210ENST00000487017 NOTOA8MTQ0 251 aa15.83■□□□□ 0.12
COL7A1-210ENST00000487017 I3L521 148 aa15.83■□□□□ 0.12
COL7A1-210ENST00000487017 ETV4P43268 484 aa15.83■□□□□ 0.12
COL7A1-210ENST00000487017 NRIP1P48552 1158 aa15.83■□□□□ 0.12
COL7A1-210ENST00000487017 WNT7BP56706 349 aa15.83■□□□□ 0.12
COL7A1-210ENST00000487017 SH3BP2P78314 561 aa15.83■□□□□ 0.12
COL7A1-210ENST00000487017 SEC23BQ15437 767 aa15.83■□□□□ 0.12
COL7A1-210ENST00000487017 ABCA11PQ4W5N1 156 aa15.83■□□□□ 0.12
COL7A1-210ENST00000487017 C2orf27AQ580R0 203 aa15.83■□□□□ 0.12
COL7A1-210ENST00000487017 PYHIN1Q6K0P9 492 aa15.83■□□□□ 0.12
COL7A1-210ENST00000487017 AMIGO1Q86WK6 493 aa15.83■□□□□ 0.12
COL7A1-210ENST00000487017 GID4Q8IVV7 300 aa15.83■□□□□ 0.12
COL7A1-210ENST00000487017 FANK1Q8TC84 345 aa15.83■□□□□ 0.12
COL7A1-210ENST00000487017 TTYH2Q9BSA4 534 aa15.83■□□□□ 0.12
COL7A1-210ENST00000487017 SYT17Q9BSW7 474 aa15.83■□□□□ 0.12
COL7A1-210ENST00000487017 RNF38Q9H0F5 515 aa15.83■□□□□ 0.12
COL7A1-210ENST00000487017 STOX2Q9P2F5 926 aaPredicted RBP15.83■□□□□ 0.12
COL7A1-210ENST00000487017 A8MUA0 341 aa15.83■□□□□ 0.12
COL7A1-210ENST00000487017 T-ENOLP0DO92 83 aa15.83■□□□□ 0.12
COL7A1-210ENST00000487017 JUPP14923 745 aa15.83■□□□□ 0.12
COL7A1-210ENST00000487017 NPRL3Q12980 569 aa15.83■□□□□ 0.12
COL7A1-210ENST00000487017 PNLDC1Q8NA58 520 aaKnown RBP15.83■□□□□ 0.12
COL7A1-210ENST00000487017 C7orf57Q8NEG2 295 aa15.83■□□□□ 0.12
COL7A1-210ENST00000487017 OR4E2Q8NGC2 313 aa15.83■□□□□ 0.12
COL7A1-210ENST00000487017 KCNK6Q9Y257 313 aa15.83■□□□□ 0.12
COL7A1-210ENST00000487017 SLC35F4A4IF30 521 aa15.83■□□□□ 0.12
COL7A1-210ENST00000487017 L7N2F9 121 aa15.83■□□□□ 0.12
COL7A1-210ENST00000487017 INPPL1O15357 1258 aa15.83■□□□□ 0.12
COL7A1-210ENST00000487017 LDB2O43679 373 aa15.83■□□□□ 0.12
COL7A1-210ENST00000487017 GJB5O95377 273 aa15.83■□□□□ 0.12
COL7A1-210ENST00000487017 C1GALT1C1LP0DN25 315 aa15.83■□□□□ 0.12
COL7A1-210ENST00000487017 CREB3L1Q96BA8 519 aa15.83■□□□□ 0.12
COL7A1-210ENST00000487017 SCGB3A2Q96PL1 93 aa15.83■□□□□ 0.12
COL7A1-210ENST00000487017 PCDHGA7Q9Y5G6 932 aa15.83■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms