RNA–Protein interactions for RNA: ENST00000479656.5

APTX-223, Transcript of aprataxin, human

TSL 1 (best)

Gene APTX, Length 1,881 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
APTX-223	ENST00000479656	MSX2	P35548	267 aa	Predicted RBP	10.64	□□□□□ -0.71
APTX-223	ENST00000479656	TSFM	P43897	325 aa	Known RBP	10.64	□□□□□ -0.71
APTX-223	ENST00000479656	ALDH9A1	P49189	494 aa		10.64	□□□□□ -0.71
APTX-223	ENST00000479656	MTTP	P55157	894 aa		10.64	□□□□□ -0.71
APTX-223	ENST00000479656	TRA2B	P62995	288 aa	Known RBP	10.64	□□□□□ -0.71
APTX-223	ENST00000479656	ELF3	P78545	371 aa	Predicted RBP	10.64	□□□□□ -0.71
APTX-223	ENST00000479656	KLC1	Q07866	573 aa		10.64	□□□□□ -0.71
APTX-223	ENST00000479656	KCNAB1	Q14722	419 aa		10.64	□□□□□ -0.71
APTX-223	ENST00000479656	HEPACAM	Q14CZ8	416 aa		10.64	□□□□□ -0.71
APTX-223	ENST00000479656	DEFB134	Q4QY38	66 aa		10.64	□□□□□ -0.71
APTX-223	ENST00000479656	MRM1	Q6IN84	353 aa	Known RBP	10.64	□□□□□ -0.71
APTX-223	ENST00000479656	TMEM214	Q6NUQ4	689 aa	Known RBP	10.64	□□□□□ -0.71
APTX-223	ENST00000479656	FAM180B	Q6P0A1	224 aa		10.64	□□□□□ -0.71
APTX-223	ENST00000479656	TMEM71	Q6P5X7	295 aa		10.64	□□□□□ -0.71
APTX-223	ENST00000479656	ZNF574	Q6ZN55	896 aa	Predicted RBP	10.64	□□□□□ -0.71
APTX-223	ENST00000479656	DBX2	Q6ZNG2	339 aa		10.64	□□□□□ -0.71
APTX-223	ENST00000479656	IKBIP	Q70UQ0	350 aa		10.64	□□□□□ -0.71
APTX-223	ENST00000479656	ABHD13	Q7L211	337 aa		10.64	□□□□□ -0.71
APTX-223	ENST00000479656	R3HCC1L	Q7Z5L2	792 aa	Known RBP	10.64	□□□□□ -0.71
APTX-223	ENST00000479656	CAMKMT	Q7Z624	323 aa		10.64	□□□□□ -0.71
APTX-223	ENST00000479656	DHDDS	Q86SQ9	333 aa		10.64	□□□□□ -0.71
APTX-223	ENST00000479656	HPS6	Q86YV9	775 aa		10.64	□□□□□ -0.71
APTX-223	ENST00000479656	TICAM1	Q8IUC6	712 aa		10.64	□□□□□ -0.71
APTX-223	ENST00000479656	FBXW8	Q8N3Y1	598 aa		10.64	□□□□□ -0.71
APTX-223	ENST00000479656	ZCCHC7	Q8N3Z6	543 aa	Known RBP	10.64	□□□□□ -0.71
APTX-223	ENST00000479656	SUMF1	Q8NBK3	374 aa		10.64	□□□□□ -0.71
APTX-223	ENST00000479656	IFI44	Q8TCB0	444 aa		10.64	□□□□□ -0.71
APTX-223	ENST00000479656	NAT6	Q93015	286 aa		10.64	□□□□□ -0.71
APTX-223	ENST00000479656	MIEF2	Q96C03	454 aa		10.64	□□□□□ -0.71
APTX-223	ENST00000479656	PPCDC	Q96CD2	204 aa		10.64	□□□□□ -0.71
APTX-223	ENST00000479656	NLN	Q9BYT8	704 aa		10.64	□□□□□ -0.71
APTX-223	ENST00000479656	KCNH6	Q9H252	994 aa		10.64	□□□□□ -0.71
APTX-223	ENST00000479656	LRRN3	Q9H3W5	708 aa		10.64	□□□□□ -0.71
APTX-223	ENST00000479656	RMND5A	Q9H871	391 aa		10.64	□□□□□ -0.71
APTX-223	ENST00000479656	MIEF1	Q9NQG6	463 aa		10.64	□□□□□ -0.71
APTX-223	ENST00000479656	SLC7A8	Q9UHI5	535 aa		10.64	□□□□□ -0.71
APTX-223	ENST00000479656	PRPF19	Q9UMS4	504 aa	Known RBP	10.64	□□□□□ -0.71
APTX-223	ENST00000479656	PLCL2	Q9UPR0	1127 aa		10.64	□□□□□ -0.71
APTX-223	ENST00000479656	WBP11	Q9Y2W2	641 aa	Known RBP	10.64	□□□□□ -0.71
APTX-223	ENST00000479656	ATG4B	Q9Y4P1	393 aa		10.64	□□□□□ -0.71
APTX-223	ENST00000479656	ASB4	Q9Y574	426 aa		10.64	□□□□□ -0.71
APTX-223	ENST00000479656	DMD	P11532	3685 aa		10.64	□□□□□ -0.71
APTX-223	ENST00000479656	MN1	Q10571	1320 aa	Predicted RBP	10.64	□□□□□ -0.71
APTX-223	ENST00000479656		A0A1W2PR48	441 aa		10.64	□□□□□ -0.71
APTX-223	ENST00000479656	WASHC1	A8K0Z3	465 aa		10.64	□□□□□ -0.71
APTX-223	ENST00000479656	MAP3K7	O43318	606 aa		10.64	□□□□□ -0.71
APTX-223	ENST00000479656	CPSF4	O95639	269 aa	Known RBP	10.64	□□□□□ -0.71
APTX-223	ENST00000479656	GSN	P06396	782 aa		10.64	□□□□□ -0.71
APTX-223	ENST00000479656	ZNF806	P0C7X5	589 aa		10.64	□□□□□ -0.71
APTX-223	ENST00000479656	ZNF883	P0CG24	379 aa		10.64	□□□□□ -0.71
APTX-223	ENST00000479656	ALOX12	P18054	663 aa		10.64	□□□□□ -0.71
APTX-223	ENST00000479656	DDC	P20711	480 aa		10.64	□□□□□ -0.71
APTX-223	ENST00000479656	SLC6A2	P23975	617 aa		10.64	□□□□□ -0.71
APTX-223	ENST00000479656	RPL3	P39023	403 aa	Known RBP	10.64	□□□□□ -0.71
APTX-223	ENST00000479656	CDKN2C	P42773	168 aa		10.64	□□□□□ -0.71
APTX-223	ENST00000479656	ARL4D	P49703	201 aa		10.64	□□□□□ -0.71
APTX-223	ENST00000479656	SLC7A2	P52569	658 aa		10.64	□□□□□ -0.71
APTX-223	ENST00000479656	HSD11B2	P80365	405 aa		10.64	□□□□□ -0.71
APTX-223	ENST00000479656	TCF15	Q12870	199 aa		10.64	□□□□□ -0.71
APTX-223	ENST00000479656	SQSTM1	Q13501	440 aa		10.64	□□□□□ -0.71
APTX-223	ENST00000479656	PDE7A	Q13946	482 aa		10.64	□□□□□ -0.71
APTX-223	ENST00000479656	CEACAM7	Q14002	265 aa		10.64	□□□□□ -0.71
APTX-223	ENST00000479656	MPEG1	Q2M385	716 aa		10.64	□□□□□ -0.71
APTX-223	ENST00000479656	MUM1	Q2TAK8	710 aa		10.64	□□□□□ -0.71
APTX-223	ENST00000479656	NDUFAF5	Q5TEU4	345 aa		10.64	□□□□□ -0.71
APTX-223	ENST00000479656	NANOGP8	Q6NSW7	305 aa		10.64	□□□□□ -0.71
APTX-223	ENST00000479656	PRSS41	Q7RTY9	318 aa		10.64	□□□□□ -0.71
APTX-223	ENST00000479656	SLC15A3	Q8IY34	581 aa		10.64	□□□□□ -0.71
APTX-223	ENST00000479656	KIAA2013	Q8IYS2	634 aa		10.64	□□□□□ -0.71
APTX-223	ENST00000479656	CLECL1	Q8IZS7	167 aa		10.64	□□□□□ -0.71
APTX-223	ENST00000479656	RHBDD1	Q8TEB9	315 aa		10.64	□□□□□ -0.71
APTX-223	ENST00000479656	ATOH1	Q92858	354 aa	Predicted RBP	10.64	□□□□□ -0.71
APTX-223	ENST00000479656	CIDEC	Q96AQ7	238 aa	Predicted RBP	10.64	□□□□□ -0.71
APTX-223	ENST00000479656	MTERF3	Q96E29	417 aa		10.64	□□□□□ -0.71
APTX-223	ENST00000479656	ITCH	Q96J02	903 aa		10.64	□□□□□ -0.71
APTX-223	ENST00000479656	CGREF1	Q99674	301 aa		10.64	□□□□□ -0.71
APTX-223	ENST00000479656	MAPKAP1	Q9BPZ7	522 aa		10.64	□□□□□ -0.71
APTX-223	ENST00000479656	SPRTN	Q9H040	489 aa	Predicted RBP	10.64	□□□□□ -0.71
APTX-223	ENST00000479656	PAIP1	Q9H074	479 aa	Known RBP	10.64	□□□□□ -0.71
APTX-223	ENST00000479656	SYNDIG1	Q9H7V2	258 aa		10.64	□□□□□ -0.71
APTX-223	ENST00000479656	NANOG	Q9H9S0	305 aa		10.64	□□□□□ -0.71
APTX-223	ENST00000479656	SPAG4	Q9NPE6	437 aa		10.64	□□□□□ -0.71
APTX-223	ENST00000479656	SLC6A13	Q9NSD5	602 aa		10.64	□□□□□ -0.71
APTX-223	ENST00000479656	RXFP3	Q9NSD7	469 aa		10.64	□□□□□ -0.71
APTX-223	ENST00000479656	DNAAF2	Q9NVR5	837 aa	Known RBP	10.64	□□□□□ -0.71
APTX-223	ENST00000479656	VAPA	Q9P0L0	249 aa		10.64	□□□□□ -0.71
APTX-223	ENST00000479656	C5AR2	Q9P296	337 aa		10.64	□□□□□ -0.71
APTX-223	ENST00000479656	TMEM181	Q9P2C4	612 aa		10.64	□□□□□ -0.71
APTX-223	ENST00000479656	ERVK-11	Q9UQG0	969 aa		10.64	□□□□□ -0.71
APTX-223	ENST00000479656	PRSS51	A0A1B0GVH4	220 aa		10.63	□□□□□ -0.71
APTX-223	ENST00000479656	RFXANK	O14593	260 aa		10.63	□□□□□ -0.71
APTX-223	ENST00000479656	CDX4	O14627	284 aa	Predicted RBP	10.63	□□□□□ -0.71
APTX-223	ENST00000479656	PRKRA	O75569	313 aa	Known RBP	10.63	□□□□□ -0.71
APTX-223	ENST00000479656	SCEL	O95171	688 aa		10.63	□□□□□ -0.71
APTX-223	ENST00000479656	CPNE6	O95741	557 aa		10.63	□□□□□ -0.71
APTX-223	ENST00000479656	IL1RN	P18510	177 aa		10.63	□□□□□ -0.71
APTX-223	ENST00000479656	TCN1	P20061	433 aa	Predicted RBP	10.63	□□□□□ -0.71
APTX-223	ENST00000479656	GSTM5	P46439	218 aa		10.63	□□□□□ -0.71
APTX-223	ENST00000479656	DUSP3	P51452	185 aa	Predicted RBP	10.63	□□□□□ -0.71
APTX-223	ENST00000479656	OLR1	P78380	273 aa		10.63	□□□□□ -0.71

Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms