RNA–Protein interactions for RNA: ENST00000477573.1

RTFDC1-207, Transcript of Protein RTF2 homolog, humanhuman

TSL 1 (best)

Gene RTFDC1, Length 2,193 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTFDC1-207ENST00000477573 PFDN5Q99471 154 aa12.18□□□□□ -0.46
RTFDC1-207ENST00000477573 TRIM54Q9BYV2 358 aa12.18□□□□□ -0.46
RTFDC1-207ENST00000477573 NKX6-2Q9C056 277 aaPredicted RBP12.18□□□□□ -0.46
RTFDC1-207ENST00000477573 CHMP1AQ9HD42 196 aaPredicted RBP12.18□□□□□ -0.46
RTFDC1-207ENST00000477573 SSR3Q9UNL2 185 aa12.18□□□□□ -0.46
RTFDC1-207ENST00000477573 CRYL1Q9Y2S2 319 aa12.18□□□□□ -0.46
RTFDC1-207ENST00000477573 ORC6Q9Y5N6 252 aa12.18□□□□□ -0.46
RTFDC1-207ENST00000477573 NLRC5Q86WI3 1866 aa12.17□□□□□ -0.46
RTFDC1-207ENST00000477573 PATJQ8NI35 1801 aa12.17□□□□□ -0.46
RTFDC1-207ENST00000477573 A0A0A0MRY4 1105 aa12.17□□□□□ -0.46
RTFDC1-207ENST00000477573 SLC12A8A0AV02 714 aa12.17□□□□□ -0.46
RTFDC1-207ENST00000477573 ANKDD1BA6NHY2 528 aa12.17□□□□□ -0.46
RTFDC1-207ENST00000477573 PDCD5O14737 125 aa12.17□□□□□ -0.46
RTFDC1-207ENST00000477573 PHYHO14832 338 aa12.17□□□□□ -0.46
RTFDC1-207ENST00000477573 DCLK1O15075 740 aa12.17□□□□□ -0.46
RTFDC1-207ENST00000477573 HLA-DQB1P01920 261 aa12.17□□□□□ -0.46
RTFDC1-207ENST00000477573 MPOP05164 745 aa12.17□□□□□ -0.46
RTFDC1-207ENST00000477573 HNRNPLP14866 589 aaKnown RBP eCLIP12.17□□□□□ -0.468e-9■■■■■ 31.5
RTFDC1-207ENST00000477573 DDX6P26196 483 aaKnown RBP eCLIP12.17□□□□□ -0.46
RTFDC1-207ENST00000477573 SLC1A3P43003 542 aa12.17□□□□□ -0.46
RTFDC1-207ENST00000477573 HNMTP50135 292 aa12.17□□□□□ -0.46
RTFDC1-207ENST00000477573 BTG1P62324 171 aa12.17□□□□□ -0.46
RTFDC1-207ENST00000477573 ERVK-25P63136 954 aa12.17□□□□□ -0.46
RTFDC1-207ENST00000477573 KHDRBS1Q07666 443 aaKnown RBP eCLIP12.17□□□□□ -0.46
RTFDC1-207ENST00000477573 CHRNA6Q15825 494 aa12.17□□□□□ -0.46
RTFDC1-207ENST00000477573 TAC4Q86UU9 113 aa12.17□□□□□ -0.46
RTFDC1-207ENST00000477573 PAQR7Q86WK9 346 aa12.17□□□□□ -0.46
RTFDC1-207ENST00000477573 SCN4BQ8IWT1 228 aa12.17□□□□□ -0.46
RTFDC1-207ENST00000477573 DMRTC2Q8IXT2 367 aaPredicted RBP12.17□□□□□ -0.46
RTFDC1-207ENST00000477573 WDSUB1Q8N9V3 476 aa12.17□□□□□ -0.46
RTFDC1-207ENST00000477573 CCNYQ8ND76 341 aa12.17□□□□□ -0.46
RTFDC1-207ENST00000477573 CNIH3Q8TBE1 160 aa12.17□□□□□ -0.46
RTFDC1-207ENST00000477573 SLC22A18Q96BI1 424 aa12.17□□□□□ -0.46
RTFDC1-207ENST00000477573 CELF6Q96J87 481 aaKnown RBP12.17□□□□□ -0.46
RTFDC1-207ENST00000477573 SPATA13Q96N96 652 aa12.17□□□□□ -0.46
RTFDC1-207ENST00000477573 SERINC2Q96SA4 455 aa12.17□□□□□ -0.46
RTFDC1-207ENST00000477573 TMEM175Q9BSA9 504 aa12.17□□□□□ -0.46
RTFDC1-207ENST00000477573 ERVK-6Q9BXR3 956 aa12.17□□□□□ -0.46
RTFDC1-207ENST00000477573 RNF32Q9H0A6 362 aa12.17□□□□□ -0.46
RTFDC1-207ENST00000477573 TKTL2Q9H0I9 626 aa12.17□□□□□ -0.46
RTFDC1-207ENST00000477573 FBXO44Q9H4M3 255 aa12.17□□□□□ -0.46
RTFDC1-207ENST00000477573 NT5DC2Q9H857 520 aa12.17□□□□□ -0.46
RTFDC1-207ENST00000477573 ABCB8Q9NUT2 735 aa12.17□□□□□ -0.46
RTFDC1-207ENST00000477573 OR12D3Q9UGF7 316 aa12.17□□□□□ -0.46
RTFDC1-207ENST00000477573 BRCA2P51587 3418 aa12.17□□□□□ -0.46
RTFDC1-207ENST00000477573 TNFRSF10BO14763 440 aa12.16□□□□□ -0.46
RTFDC1-207ENST00000477573 PQBP1O60828 265 aaKnown RBP12.16□□□□□ -0.46
RTFDC1-207ENST00000477573 STX11O75558 287 aa12.16□□□□□ -0.46
RTFDC1-207ENST00000477573 CSF2P04141 144 aa12.16□□□□□ -0.46
RTFDC1-207ENST00000477573 ANXA6P08133 673 aa12.16□□□□□ -0.46
RTFDC1-207ENST00000477573 CSF3P09919 207 aa12.16□□□□□ -0.46
RTFDC1-207ENST00000477573 RAP2AP10114 183 aa12.16□□□□□ -0.46
RTFDC1-207ENST00000477573 ERCC2P18074 760 aa12.16□□□□□ -0.46
RTFDC1-207ENST00000477573 ATP5A1P25705 553 aaKnown RBP12.16□□□□□ -0.46
RTFDC1-207ENST00000477573 GRIA4P48058 902 aa12.16□□□□□ -0.46
RTFDC1-207ENST00000477573 NR0B1P51843 470 aaKnown RBP12.16□□□□□ -0.46
RTFDC1-207ENST00000477573 SNTB1Q13884 538 aaKnown RBP12.16□□□□□ -0.46
RTFDC1-207ENST00000477573 KEAP1Q14145 624 aa12.16□□□□□ -0.46
RTFDC1-207ENST00000477573 VEPH1Q14D04 833 aa12.16□□□□□ -0.46
RTFDC1-207ENST00000477573 SYT16Q17RD7 645 aa12.16□□□□□ -0.46
RTFDC1-207ENST00000477573 GLYR1Q49A26 553 aaPredicted RBP12.16□□□□□ -0.46
RTFDC1-207ENST00000477573 CTXN3Q4LDR2 81 aa12.16□□□□□ -0.46
RTFDC1-207ENST00000477573 PYCR3Q53H96 274 aa12.16□□□□□ -0.46
RTFDC1-207ENST00000477573 OR2B11Q5JQS5 317 aa12.16□□□□□ -0.46
RTFDC1-207ENST00000477573 FAM171A1Q5VUB5 890 aa12.16□□□□□ -0.46
RTFDC1-207ENST00000477573 ATRAIDQ6UW56 229 aa12.16□□□□□ -0.46
RTFDC1-207ENST00000477573 EIF3MQ7L2H7 374 aaKnown RBP12.16□□□□□ -0.46
RTFDC1-207ENST00000477573 HIPK1Q86Z02 1210 aa12.16□□□□□ -0.46
RTFDC1-207ENST00000477573 NPAS4Q8IUM7 802 aa12.16□□□□□ -0.46
RTFDC1-207ENST00000477573 TNS4Q8IZW8 715 aa12.16□□□□□ -0.46
RTFDC1-207ENST00000477573 STPG2Q8N412 459 aa12.16□□□□□ -0.46
RTFDC1-207ENST00000477573 SCAMP5Q8TAC9 235 aa12.16□□□□□ -0.46
RTFDC1-207ENST00000477573 CASD1Q96PB1 797 aa12.16□□□□□ -0.46
RTFDC1-207ENST00000477573 LGMNQ99538 433 aa12.16□□□□□ -0.46
RTFDC1-207ENST00000477573 SSX3Q99909 188 aa12.16□□□□□ -0.46
RTFDC1-207ENST00000477573 SORBS1Q9BX66 1292 aaKnown RBP12.16□□□□□ -0.46
RTFDC1-207ENST00000477573 OSBPL2Q9H1P3 480 aa12.16□□□□□ -0.46
RTFDC1-207ENST00000477573 OPA3Q9H6K4 179 aa12.16□□□□□ -0.46
RTFDC1-207ENST00000477573 SYNDIG1Q9H7V2 258 aa12.16□□□□□ -0.46
RTFDC1-207ENST00000477573 TMPRSS4Q9NRS4 437 aa12.16□□□□□ -0.46
RTFDC1-207ENST00000477573 GDE1Q9NZC3 331 aa12.16□□□□□ -0.46
RTFDC1-207ENST00000477573 XPR1Q9UBH6 696 aa12.16□□□□□ -0.46
RTFDC1-207ENST00000477573 M0R082 166 aa12.16□□□□□ -0.46
RTFDC1-207ENST00000477573 CLDN4O14493 209 aa12.16□□□□□ -0.46
RTFDC1-207ENST00000477573 RAD1O60671 282 aa12.16□□□□□ -0.46
RTFDC1-207ENST00000477573 APOC3P02656 99 aa12.16□□□□□ -0.46
RTFDC1-207ENST00000477573 CHRM5P08912 532 aaPredicted RBP12.16□□□□□ -0.46
RTFDC1-207ENST00000477573 SAGP10523 405 aaPredicted RBP12.16□□□□□ -0.46
RTFDC1-207ENST00000477573 ANXA3P12429 323 aa12.16□□□□□ -0.46
RTFDC1-207ENST00000477573 TSPAN8P19075 237 aa12.16□□□□□ -0.46
RTFDC1-207ENST00000477573 CCR1P32246 355 aa12.16□□□□□ -0.46
RTFDC1-207ENST00000477573 ZNF81P51508 661 aa12.16□□□□□ -0.46
RTFDC1-207ENST00000477573 CDH4P55283 916 aa12.16□□□□□ -0.46
RTFDC1-207ENST00000477573 HOXC5Q00444 222 aa12.16□□□□□ -0.46
RTFDC1-207ENST00000477573 ZNF33AQ06730 810 aa12.16□□□□□ -0.46
RTFDC1-207ENST00000477573 IFRD2Q12894 506 aaPredicted RBP12.16□□□□□ -0.46
RTFDC1-207ENST00000477573 MPEG1Q2M385 716 aa12.16□□□□□ -0.46
RTFDC1-207ENST00000477573 WSCD2Q2TBF2 565 aa12.16□□□□□ -0.46
RTFDC1-207ENST00000477573 CTU1Q7Z7A3 348 aaKnown RBP12.16□□□□□ -0.46
RTFDC1-207ENST00000477573 CLEC14AQ86T13 490 aa12.16□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms