RNA–Protein interactions for RNA: ENST00000476739.5

HDAC3-208, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 422 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-208ENST00000476739 CMTM7Q96FZ5 175 aa9.13□□□□□ -0.95
HDAC3-208ENST00000476739 FAR2Q96K12 515 aa9.13□□□□□ -0.95
HDAC3-208ENST00000476739 FER1L6-AS2Q96M78 137 aa9.13□□□□□ -0.95
HDAC3-208ENST00000476739 IP6K3Q96PC2 410 aa9.13□□□□□ -0.95
HDAC3-208ENST00000476739 FAM111AQ96PZ2 611 aa9.13□□□□□ -0.95
HDAC3-208ENST00000476739 KCNA7Q96RP8 456 aa9.13□□□□□ -0.95
HDAC3-208ENST00000476739 MAPKAP1Q9BPZ7 522 aa9.13□□□□□ -0.95
HDAC3-208ENST00000476739 NUDT9Q9BW91 350 aa9.13□□□□□ -0.95
HDAC3-208ENST00000476739 SLC25A18Q9H1K4 315 aa9.13□□□□□ -0.95
HDAC3-208ENST00000476739 ADNPQ9H2P0 1102 aa9.13□□□□□ -0.95
HDAC3-208ENST00000476739 ZNF160Q9HCG1 818 aa9.13□□□□□ -0.95
HDAC3-208ENST00000476739 PRM3Q9NNZ6 103 aa9.13□□□□□ -0.95
HDAC3-208ENST00000476739 MLXIPLQ9NP71 852 aa9.13□□□□□ -0.95
HDAC3-208ENST00000476739 OXSMQ9NWU1 459 aa9.13□□□□□ -0.95
HDAC3-208ENST00000476739 MKS1Q9NXB0 559 aa9.13□□□□□ -0.95
HDAC3-208ENST00000476739 KCMF1Q9P0J7 381 aa9.13□□□□□ -0.95
HDAC3-208ENST00000476739 TP53TG5Q9Y2B4 290 aa9.13□□□□□ -0.95
HDAC3-208ENST00000476739 PLLPQ9Y342 182 aa9.13□□□□□ -0.95
HDAC3-208ENST00000476739 PCDHGA11Q9Y5H2 935 aa9.13□□□□□ -0.95
HDAC3-208ENST00000476739 IGHV1-45A0A0A0MS14 117 aa9.12□□□□□ -0.95
HDAC3-208ENST00000476739 CCDC151A5D8V7 595 aa9.12□□□□□ -0.95
HDAC3-208ENST00000476739 TGFBR3LH3BV60 316 aa9.12□□□□□ -0.95
HDAC3-208ENST00000476739 CYR61O00622 381 aa9.12□□□□□ -0.95
HDAC3-208ENST00000476739 B3GALT2O43825 422 aa9.12□□□□□ -0.95
HDAC3-208ENST00000476739 TYROBPO43914 113 aa9.12□□□□□ -0.95
HDAC3-208ENST00000476739 OTCP00480 354 aa9.12□□□□□ -0.95
HDAC3-208ENST00000476739 PDYNP01213 254 aa9.12□□□□□ -0.95
HDAC3-208ENST00000476739 C8orf89P0DMQ9 161 aa9.12□□□□□ -0.95
HDAC3-208ENST00000476739 RNH1P13489 461 aaKnown RBP9.12□□□□□ -0.95
HDAC3-208ENST00000476739 CPA3P15088 417 aa9.12□□□□□ -0.95
HDAC3-208ENST00000476739 ACPPP15309 386 aa9.12□□□□□ -0.95
HDAC3-208ENST00000476739 MAOAP21397 527 aa9.12□□□□□ -0.95
HDAC3-208ENST00000476739 HIST1H1TP22492 207 aaPredicted RBP9.12□□□□□ -0.95
HDAC3-208ENST00000476739 SERPINB1P30740 379 aa9.12□□□□□ -0.95
HDAC3-208ENST00000476739 BSGP35613 385 aa9.12□□□□□ -0.95
HDAC3-208ENST00000476739 NAGLUP54802 743 aa9.12□□□□□ -0.95
HDAC3-208ENST00000476739 RRADP55042 308 aa9.12□□□□□ -0.95
HDAC3-208ENST00000476739 MTTPP55157 894 aa9.12□□□□□ -0.95
HDAC3-208ENST00000476739 FOXA1P55317 472 aa9.12□□□□□ -0.95
HDAC3-208ENST00000476739 NFATC3Q12968 1075 aa9.12□□□□□ -0.95
HDAC3-208ENST00000476739 ABRAXAS2Q15018 415 aa9.12□□□□□ -0.95
HDAC3-208ENST00000476739 TNFAIP8L3Q5GJ75 292 aa9.12□□□□□ -0.95
HDAC3-208ENST00000476739 FRG2Q64ET8 278 aa9.12□□□□□ -0.95
HDAC3-208ENST00000476739 TTC19Q6DKK2 380 aaPredicted RBP9.12□□□□□ -0.95
HDAC3-208ENST00000476739 CHSY3Q70JA7 882 aa9.12□□□□□ -0.95
HDAC3-208ENST00000476739 ANKRD37Q7Z713 158 aa9.12□□□□□ -0.95
HDAC3-208ENST00000476739 EXOC3L1Q86VI1 746 aa9.12□□□□□ -0.95
HDAC3-208ENST00000476739 PTRH1Q86Y79 214 aaKnown RBP9.12□□□□□ -0.95
HDAC3-208ENST00000476739 C10orf107Q8IVU9 208 aa9.12□□□□□ -0.95
HDAC3-208ENST00000476739 PARP9Q8IXQ6 854 aa9.12□□□□□ -0.95
HDAC3-208ENST00000476739 GALNT16Q8N428 558 aa9.12□□□□□ -0.95
HDAC3-208ENST00000476739 CDYL2Q8N8U2 506 aa9.12□□□□□ -0.95
HDAC3-208ENST00000476739 ACOT4Q8N9L9 421 aa9.12□□□□□ -0.95
HDAC3-208ENST00000476739 CCDC63Q8NA47 563 aa9.12□□□□□ -0.95
HDAC3-208ENST00000476739 FAM47BQ8NA70 645 aa9.12□□□□□ -0.95
HDAC3-208ENST00000476739 PLPP5Q8NEB5 264 aa9.12□□□□□ -0.95
HDAC3-208ENST00000476739 C9orf43Q8TAL5 461 aaPredicted RBP9.12□□□□□ -0.95
HDAC3-208ENST00000476739 NACC2Q96BF6 587 aa9.12□□□□□ -0.95
HDAC3-208ENST00000476739 REPS1Q96D71 796 aa9.12□□□□□ -0.95
HDAC3-208ENST00000476739 KCNC2Q96PR1 638 aa9.12□□□□□ -0.95
HDAC3-208ENST00000476739 FRG2BQ96QU4 278 aa9.12□□□□□ -0.95
HDAC3-208ENST00000476739 OR1F2PQ96R84 312 aa9.12□□□□□ -0.95
HDAC3-208ENST00000476739 SERINC2Q96SA4 455 aa9.12□□□□□ -0.95
HDAC3-208ENST00000476739 ZNF382Q96SR6 550 aa9.12□□□□□ -0.95
HDAC3-208ENST00000476739 HBEGFQ99075 208 aa9.12□□□□□ -0.95
HDAC3-208ENST00000476739 WDR77Q9BQA1 342 aaPredicted RBP9.12□□□□□ -0.95
HDAC3-208ENST00000476739 SLC25A23Q9BV35 468 aa9.12□□□□□ -0.95
HDAC3-208ENST00000476739 MECRQ9BV79 373 aa9.12□□□□□ -0.95
HDAC3-208ENST00000476739 SHCBP1LQ9BZQ2 653 aa9.12□□□□□ -0.95
HDAC3-208ENST00000476739 ZNF552Q9H707 407 aaPredicted RBP9.12□□□□□ -0.95
HDAC3-208ENST00000476739 ZBTB20Q9HC78 741 aaPredicted RBP9.12□□□□□ -0.95
HDAC3-208ENST00000476739 TNFRSF12AQ9NP84 129 aa9.12□□□□□ -0.95
HDAC3-208ENST00000476739 ATP13A2Q9NQ11 1180 aa9.12□□□□□ -0.95
HDAC3-208ENST00000476739 NECTIN3Q9NQS3 549 aa9.12□□□□□ -0.95
HDAC3-208ENST00000476739 TRPS1Q9UHF7 1281 aa9.12□□□□□ -0.95
HDAC3-208ENST00000476739 ADGRE2Q9UHX3 823 aa9.12□□□□□ -0.95
HDAC3-208ENST00000476739 TUBD1Q9UJT1 453 aa9.12□□□□□ -0.95
HDAC3-208ENST00000476739 DAPP1Q9UN19 280 aa9.12□□□□□ -0.95
HDAC3-208ENST00000476739 CLDN16Q9Y5I7 305 aa9.12□□□□□ -0.95
HDAC3-208ENST00000476739 IGKV3D-11A0A0A0MRZ8 115 aa9.11□□□□□ -0.95
HDAC3-208ENST00000476739 NSG1A0A0A6YYJ2 146 aa9.11□□□□□ -0.95
HDAC3-208ENST00000476739 MYOCOSA0A1B0GUC4 107 aa9.11□□□□□ -0.95
HDAC3-208ENST00000476739 A0A1W2PQ72 361 aa9.11□□□□□ -0.95
HDAC3-208ENST00000476739 MKRN2OSH3BPM6 223 aa9.11□□□□□ -0.95
HDAC3-208ENST00000476739 FOXE1O00358 373 aaPredicted RBP9.11□□□□□ -0.95
HDAC3-208ENST00000476739 RGS16O15492 202 aaPredicted RBP9.11□□□□□ -0.95
HDAC3-208ENST00000476739 EEDO75530 441 aaKnown RBP9.11□□□□□ -0.95
HDAC3-208ENST00000476739 PRKRAO75569 313 aaKnown RBP9.11□□□□□ -0.95
HDAC3-208ENST00000476739 SEC24DO94855 1032 aaPredicted RBP9.11□□□□□ -0.95
HDAC3-208ENST00000476739 SCELO95171 688 aa9.11□□□□□ -0.95
HDAC3-208ENST00000476739 HPP00738 406 aa9.11□□□□□ -0.95
HDAC3-208ENST00000476739 GBAP04062 536 aa9.11□□□□□ -0.95
HDAC3-208ENST00000476739 CHN1P15882 459 aa9.11□□□□□ -0.95
HDAC3-208ENST00000476739 IL10P22301 178 aa9.11□□□□□ -0.95
HDAC3-208ENST00000476739 ITGA3P26006 1051 aa9.11□□□□□ -0.95
HDAC3-208ENST00000476739 PTX3P26022 381 aaPredicted RBP9.11□□□□□ -0.95
HDAC3-208ENST00000476739 ALDH3A1P30838 453 aa9.11□□□□□ -0.95
HDAC3-208ENST00000476739 SSR2P43308 183 aa9.11□□□□□ -0.95
HDAC3-208ENST00000476739 HTR6P50406 440 aa9.11□□□□□ -0.95
HDAC3-208ENST00000476739 HNRNPH2P55795 449 aaKnown RBP9.11□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms