RNA–Protein interactions for RNA: ENST00000474056.5

UPF3A-203, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 748 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-203ENST00000474056 F2RL3Q96RI0 385 aa16.82■□□□□ 0.28
UPF3A-203ENST00000474056 CSF3RQ99062 836 aa16.82■□□□□ 0.28
UPF3A-203ENST00000474056 MS4A8Q9BY19 250 aa16.82■□□□□ 0.28
UPF3A-203ENST00000474056 AGPAT4Q9NRZ5 378 aa16.82■□□□□ 0.28
UPF3A-203ENST00000474056 TEKT2Q9UIF3 430 aa16.82■□□□□ 0.28
UPF3A-203ENST00000474056 CCDC189A1A4V9 331 aa16.81■□□□□ 0.28
UPF3A-203ENST00000474056 OR5H15A6NDH6 313 aa16.81■□□□□ 0.28
UPF3A-203ENST00000474056 SAGE2PA6NJ88 616 aa16.81■□□□□ 0.28
UPF3A-203ENST00000474056 A8MUA0 341 aa16.81■□□□□ 0.28
UPF3A-203ENST00000474056 TGFBR3LH3BV60 316 aa16.81■□□□□ 0.28
UPF3A-203ENST00000474056 E2F3O00716 465 aa16.81■□□□□ 0.28
UPF3A-203ENST00000474056 B3GALT2O43825 422 aa16.81■□□□□ 0.28
UPF3A-203ENST00000474056 KLK8O60259 260 aa16.81■□□□□ 0.28
UPF3A-203ENST00000474056 SEMA7AO75326 666 aa16.81■□□□□ 0.28
UPF3A-203ENST00000474056 SH3BGRLO75368 114 aa16.81■□□□□ 0.28
UPF3A-203ENST00000474056 AGFG2O95081 481 aa16.81■□□□□ 0.28
UPF3A-203ENST00000474056 PCNAP12004 261 aa16.81■□□□□ 0.28
UPF3A-203ENST00000474056 EPB42P16452 691 aa16.81■□□□□ 0.28
UPF3A-203ENST00000474056 HPDP32754 393 aaPredicted RBP16.81■□□□□ 0.28
UPF3A-203ENST00000474056 SERPINB9P50453 376 aa16.81■□□□□ 0.28
UPF3A-203ENST00000474056 ALDH18A1P54886 795 aaKnown RBP16.81■□□□□ 0.28
UPF3A-203ENST00000474056 LIM2P55344 173 aa16.81■□□□□ 0.28
UPF3A-203ENST00000474056 PCDH1Q08174 1060 aa16.81■□□□□ 0.28
UPF3A-203ENST00000474056 ACER2Q5QJU3 275 aa16.81■□□□□ 0.28
UPF3A-203ENST00000474056 MED27Q6P2C8 311 aa16.81■□□□□ 0.28
UPF3A-203ENST00000474056 ZNF793Q6ZN11 406 aa16.81■□□□□ 0.28
UPF3A-203ENST00000474056 SCUBE1Q8IWY4 988 aa16.81■□□□□ 0.28
UPF3A-203ENST00000474056 LAS2Q8IYD9 372 aa16.81■□□□□ 0.28
UPF3A-203ENST00000474056 RNF175Q8N4F7 328 aa16.81■□□□□ 0.28
UPF3A-203ENST00000474056 KIF2BQ8N4N8 673 aa16.81■□□□□ 0.28
UPF3A-203ENST00000474056 FAM47BQ8NA70 645 aa16.81■□□□□ 0.28
UPF3A-203ENST00000474056 PRR7Q8TB68 274 aa16.81■□□□□ 0.28
UPF3A-203ENST00000474056 FAR1Q8WVX9 515 aa16.81■□□□□ 0.28
UPF3A-203ENST00000474056 ZNF354BQ96LW1 612 aa16.81■□□□□ 0.28
UPF3A-203ENST00000474056 SERINC2Q96SA4 455 aa16.81■□□□□ 0.28
UPF3A-203ENST00000474056 COPS7BQ9H9Q2 264 aaPredicted RBP16.81■□□□□ 0.28
UPF3A-203ENST00000474056 PRDM7Q9NQW5 492 aa16.81■□□□□ 0.28
UPF3A-203ENST00000474056 CPSF2Q9P2I0 782 aaKnown RBP16.81■□□□□ 0.28
UPF3A-203ENST00000474056 DAPP1Q9UN19 280 aa16.81■□□□□ 0.28
UPF3A-203ENST00000474056 MMACHCQ9Y4U1 282 aa16.81■□□□□ 0.28
UPF3A-203ENST00000474056 CLDN16Q9Y5I7 305 aa16.81■□□□□ 0.28
UPF3A-203ENST00000474056 IKBKGQ9Y6K9 419 aa16.81■□□□□ 0.28
UPF3A-203ENST00000474056 A0A087WUV0 522 aaPredicted RBP16.8■□□□□ 0.28
UPF3A-203ENST00000474056 ANKUB1A6NFN9 424 aa16.8■□□□□ 0.28
UPF3A-203ENST00000474056 RTCAO00442 366 aaKnown RBP16.8■□□□□ 0.28
UPF3A-203ENST00000474056 SIX3O95343 332 aaPredicted RBP16.8■□□□□ 0.28
UPF3A-203ENST00000474056 MTTPP55157 894 aa16.8■□□□□ 0.28
UPF3A-203ENST00000474056 PCBP2Q15366 365 aaKnown RBP eCLIP16.8■□□□□ 0.28
UPF3A-203ENST00000474056 MEP1AQ16819 746 aa16.8■□□□□ 0.28
UPF3A-203ENST00000474056 GRHL2Q6ISB3 625 aa16.8■□□□□ 0.28
UPF3A-203ENST00000474056 FAM180AQ6UWF9 173 aa16.8■□□□□ 0.28
UPF3A-203ENST00000474056 TAOK1Q7L7X3 1001 aa16.8■□□□□ 0.28
UPF3A-203ENST00000474056 UBE3DQ7Z6J8 389 aa16.8■□□□□ 0.28
UPF3A-203ENST00000474056 ST6GALNAC3Q8NDV1 305 aa16.8■□□□□ 0.28
UPF3A-203ENST00000474056 OR7G3Q8NG95 312 aa16.8■□□□□ 0.28
UPF3A-203ENST00000474056 ELP5Q8TE02 316 aa16.8■□□□□ 0.28
UPF3A-203ENST00000474056 UBE2E3Q969T4 207 aa16.8■□□□□ 0.28
UPF3A-203ENST00000474056 TAAR6Q96RI8 345 aa16.8■□□□□ 0.28
UPF3A-203ENST00000474056 PRM3Q9NNZ6 103 aa16.8■□□□□ 0.28
UPF3A-203ENST00000474056 PRTFDC1Q9NRG1 225 aa16.8■□□□□ 0.28
UPF3A-203ENST00000474056 ZNF180Q9UJW8 692 aa16.8■□□□□ 0.28
UPF3A-203ENST00000474056 ANGPTL3Q9Y5C1 460 aa16.8■□□□□ 0.28
UPF3A-203ENST00000474056 USP9YO00507 2555 aaPredicted RBP16.79■□□□□ 0.28
UPF3A-203ENST00000474056 BLACEA4D250 179 aa16.79■□□□□ 0.28
UPF3A-203ENST00000474056 TRIM49D1C9J1S8 452 aa16.79■□□□□ 0.28
UPF3A-203ENST00000474056 KRT38O76015 456 aa16.79■□□□□ 0.28
UPF3A-203ENST00000474056 TGFB1P01137 390 aa16.79■□□□□ 0.28
UPF3A-203ENST00000474056 RHOXF2BP0C7M4 288 aa16.79■□□□□ 0.28
UPF3A-203ENST00000474056 RNF224P0DH78 156 aa16.79■□□□□ 0.28
UPF3A-203ENST00000474056 DDX39BQ13838 428 aaKnown RBP16.79■□□□□ 0.28
UPF3A-203ENST00000474056 GTF2H2Q13888 395 aa16.79■□□□□ 0.28
UPF3A-203ENST00000474056 GTF2H2CQ6P1K8 395 aa16.79■□□□□ 0.28
UPF3A-203ENST00000474056 GOLGA7Q7Z5G4 137 aa16.79■□□□□ 0.28
UPF3A-203ENST00000474056 MYLK4Q86YV6 388 aaPredicted RBP16.79■□□□□ 0.28
UPF3A-203ENST00000474056 LRRN4CLQ8ND94 238 aa16.79■□□□□ 0.28
UPF3A-203ENST00000474056 ARMC2Q8NEN0 867 aa16.79■□□□□ 0.28
UPF3A-203ENST00000474056 NFAM1Q8NET5 270 aaPredicted RBP16.79■□□□□ 0.28
UPF3A-203ENST00000474056 ADAMTS18Q8TE60 1221 aa16.79■□□□□ 0.28
UPF3A-203ENST00000474056 KCNC2Q96PR1 638 aa16.79■□□□□ 0.28
UPF3A-203ENST00000474056 RHOXF2Q9BQY4 288 aa16.79■□□□□ 0.28
UPF3A-203ENST00000474056 ANKRD10Q9NXR5 420 aa16.79■□□□□ 0.28
UPF3A-203ENST00000474056 XPR1Q9UBH6 696 aa16.79■□□□□ 0.28
UPF3A-203ENST00000474056 NBPF19A0A087WUL8 3843 aa16.79■□□□□ 0.28
UPF3A-203ENST00000474056 EXOC1LA0A1B0GW35 172 aa16.78■□□□□ 0.28
UPF3A-203ENST00000474056 GABRR3A8MPY1 467 aa16.78■□□□□ 0.28
UPF3A-203ENST00000474056 CYR61O00622 381 aa16.78■□□□□ 0.28
UPF3A-203ENST00000474056 ATP5A1P25705 553 aaKnown RBP16.78■□□□□ 0.28
UPF3A-203ENST00000474056 GCAP28676 217 aa16.78■□□□□ 0.28
UPF3A-203ENST00000474056 PPP2R1BP30154 601 aa16.78■□□□□ 0.28
UPF3A-203ENST00000474056 HSD17B7P56937 341 aa16.78■□□□□ 0.28
UPF3A-203ENST00000474056 TAS2R50P59544 299 aa16.78■□□□□ 0.28
UPF3A-203ENST00000474056 TGM3Q08188 693 aa16.78■□□□□ 0.28
UPF3A-203ENST00000474056 SLC13A2Q13183 592 aa16.78■□□□□ 0.28
UPF3A-203ENST00000474056 TUBA3CQ13748 450 aa16.78■□□□□ 0.28
UPF3A-203ENST00000474056 ELOAQ14241 798 aaKnown RBP16.78■□□□□ 0.28
UPF3A-203ENST00000474056 INAQ16352 499 aa16.78■□□□□ 0.28
UPF3A-203ENST00000474056 TUBA3EQ6PEY2 450 aa16.78■□□□□ 0.28
UPF3A-203ENST00000474056 CLNKQ7Z7G1 428 aa16.78■□□□□ 0.28
UPF3A-203ENST00000474056 IFT20Q8IY31 132 aa16.78■□□□□ 0.28
UPF3A-203ENST00000474056 SLC5A8Q8N695 610 aa16.78■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms