RNA–Protein interactions for RNA: ENST00000470076.1

COL7A1-208, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 651 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-208ENST00000470076 CNOT10Q9H9A5 744 aaKnown RBP16.32■□□□□ 0.2
COL7A1-208ENST00000470076 PRTFDC1Q9NRG1 225 aa16.32■□□□□ 0.2
COL7A1-208ENST00000470076 PNO1Q9NRX1 252 aaKnown RBP16.32■□□□□ 0.2
COL7A1-208ENST00000470076 FBXW2Q9UKT8 454 aa16.32■□□□□ 0.2
COL7A1-208ENST00000470076 A0A0G2JN53 185 aa16.31■□□□□ 0.2
COL7A1-208ENST00000470076 ANKDD1BA6NHY2 528 aa16.31■□□□□ 0.2
COL7A1-208ENST00000470076 NCF1BA6NI72 391 aaPredicted RBP16.31■□□□□ 0.2
COL7A1-208ENST00000470076 NCF1CA8MVU1 366 aaPredicted RBP16.31■□□□□ 0.2
COL7A1-208ENST00000470076 E9PLN8 166 aa16.31■□□□□ 0.2
COL7A1-208ENST00000470076 TFECO14948 347 aaPredicted RBP16.31■□□□□ 0.2
COL7A1-208ENST00000470076 ITGA10O75578 1167 aa16.31■□□□□ 0.2
COL7A1-208ENST00000470076 NCF1P14598 390 aaPredicted RBP16.31■□□□□ 0.2
COL7A1-208ENST00000470076 GGT5P36269 586 aa16.31■□□□□ 0.2
COL7A1-208ENST00000470076 MEOX1P50221 254 aa16.31■□□□□ 0.2
COL7A1-208ENST00000470076 HSF1Q00613 529 aa16.31■□□□□ 0.2
COL7A1-208ENST00000470076 SLC13A2Q13183 592 aa16.31■□□□□ 0.2
COL7A1-208ENST00000470076 ADPRMQ3LIE5 342 aa16.31■□□□□ 0.2
COL7A1-208ENST00000470076 CDKL4Q5MAI5 379 aa16.31■□□□□ 0.2
COL7A1-208ENST00000470076 TRIM40Q6P9F5 258 aa16.31■□□□□ 0.2
COL7A1-208ENST00000470076 DOLPP1Q86YN1 238 aa16.31■□□□□ 0.2
COL7A1-208ENST00000470076 ZNF595Q8IYB9 648 aa16.31■□□□□ 0.2
COL7A1-208ENST00000470076 CYP4Z2PQ8N1L4 340 aa16.31■□□□□ 0.2
COL7A1-208ENST00000470076 TMEM156Q8N614 296 aa16.31■□□□□ 0.2
COL7A1-208ENST00000470076 BBOF1Q8ND07 529 aa16.31■□□□□ 0.2
COL7A1-208ENST00000470076 OR2L5Q8NG80 312 aa16.31■□□□□ 0.2
COL7A1-208ENST00000470076 TSPAN17Q96FV3 270 aa16.31■□□□□ 0.2
COL7A1-208ENST00000470076 QRFPRQ96P65 431 aa16.31■□□□□ 0.2
COL7A1-208ENST00000470076 PHF12Q96QT6 1004 aa16.31■□□□□ 0.2
COL7A1-208ENST00000470076 NAPGQ99747 312 aaPredicted RBP16.31■□□□□ 0.2
COL7A1-208ENST00000470076 VKORC1Q9BQB6 163 aa16.31■□□□□ 0.2
COL7A1-208ENST00000470076 CCDC77Q9BR77 488 aa16.31■□□□□ 0.2
COL7A1-208ENST00000470076 REXO4Q9GZR2 422 aaKnown RBP16.31■□□□□ 0.2
COL7A1-208ENST00000470076 GRPEL1Q9HAV7 217 aa16.31■□□□□ 0.2
COL7A1-208ENST00000470076 DNAJC11Q9NVH1 559 aa16.31■□□□□ 0.2
COL7A1-208ENST00000470076 WWOXQ9NZC7 414 aa16.31■□□□□ 0.2
COL7A1-208ENST00000470076 RNF14Q9UBS8 474 aa16.31■□□□□ 0.2
COL7A1-208ENST00000470076 ASB1Q9Y576 335 aa16.31■□□□□ 0.2
COL7A1-208ENST00000470076 CLDN16Q9Y5I7 305 aa16.31■□□□□ 0.2
COL7A1-208ENST00000470076 USP27XA6NNY8 438 aa16.3■□□□□ 0.2
COL7A1-208ENST00000470076 CLGNO14967 610 aa16.3■□□□□ 0.2
COL7A1-208ENST00000470076 TAPBPO15533 448 aa16.3■□□□□ 0.2
COL7A1-208ENST00000470076 WISP3O95389 354 aaPredicted RBP16.3■□□□□ 0.2
COL7A1-208ENST00000470076 SNRPB2P08579 225 aaKnown RBP16.3■□□□□ 0.2
COL7A1-208ENST00000470076 TFEBP19484 476 aa16.3■□□□□ 0.2
COL7A1-208ENST00000470076 RPL21P46778 160 aaKnown RBP16.3■□□□□ 0.2
COL7A1-208ENST00000470076 GPR143P51810 404 aa16.3■□□□□ 0.2
COL7A1-208ENST00000470076 PLA2G16P53816 162 aa16.3■□□□□ 0.2
COL7A1-208ENST00000470076 RCN2Q14257 317 aa16.3■□□□□ 0.2
COL7A1-208ENST00000470076 GPSM1Q86YR5 675 aa16.3■□□□□ 0.2
COL7A1-208ENST00000470076 SULF2Q8IWU5 870 aa16.3■□□□□ 0.2
COL7A1-208ENST00000470076 C16orf52Q8NHV5 167 aa16.3■□□□□ 0.2
COL7A1-208ENST00000470076 PYROXD1Q8WU10 500 aa16.3■□□□□ 0.2
COL7A1-208ENST00000470076 CDKL2Q92772 493 aa16.3■□□□□ 0.2
COL7A1-208ENST00000470076 NCLNQ969V3 563 aa16.3■□□□□ 0.2
COL7A1-208ENST00000470076 SERINC2Q96SA4 455 aa16.3■□□□□ 0.2
COL7A1-208ENST00000470076 TMEM79Q9BSE2 394 aa16.3■□□□□ 0.2
COL7A1-208ENST00000470076 ADAP2Q9NPF8 381 aa16.3■□□□□ 0.2
COL7A1-208ENST00000470076 SMYD2Q9NRG4 433 aa16.3■□□□□ 0.2
COL7A1-208ENST00000470076 TXNDC16Q9P2K2 825 aa16.3■□□□□ 0.2
COL7A1-208ENST00000470076 ZNF223Q9UK11 482 aaPredicted RBP16.3■□□□□ 0.2
COL7A1-208ENST00000470076 MTO1Q9Y2Z2 717 aaKnown RBP16.3■□□□□ 0.2
COL7A1-208ENST00000470076 YARS2Q9Y2Z4 477 aaKnown RBP16.3■□□□□ 0.2
COL7A1-208ENST00000470076 SNX24Q9Y343 169 aa16.3■□□□□ 0.2
COL7A1-208ENST00000470076 POLQO75417 2590 aa16.3■□□□□ 0.2
COL7A1-208ENST00000470076 CSMD2Q7Z408 3487 aa16.29■□□□□ 0.2
COL7A1-208ENST00000470076 TGFBR3LH3BV60 316 aa16.29■□□□□ 0.2
COL7A1-208ENST00000470076 ZNHIT1O43257 154 aa16.29■□□□□ 0.2
COL7A1-208ENST00000470076 PEX1O43933 1283 aa16.29■□□□□ 0.2
COL7A1-208ENST00000470076 STK16O75716 305 aa16.29■□□□□ 0.2
COL7A1-208ENST00000470076 ZFAND5O76080 213 aa16.29■□□□□ 0.2
COL7A1-208ENST00000470076 TBX6O95947 436 aaPredicted RBP16.29■□□□□ 0.2
COL7A1-208ENST00000470076 CCDC166P0CW27 439 aa16.29■□□□□ 0.2
COL7A1-208ENST00000470076 PTGER1P34995 402 aa16.29■□□□□ 0.2
COL7A1-208ENST00000470076 SSR4P51571 173 aa16.29■□□□□ 0.2
COL7A1-208ENST00000470076 HNRNPFP52597 415 aaKnown RBP16.29■□□□□ 0.2
COL7A1-208ENST00000470076 MTTPP55157 894 aa16.29■□□□□ 0.2
COL7A1-208ENST00000470076 ATP6V0D1P61421 351 aa16.29■□□□□ 0.2
COL7A1-208ENST00000470076 TGM3Q08188 693 aa16.29■□□□□ 0.2
COL7A1-208ENST00000470076 CDSNQ15517 529 aa16.29■□□□□ 0.2
COL7A1-208ENST00000470076 ELAVL1Q15717 326 aaKnown RBP16.29■□□□□ 0.2
COL7A1-208ENST00000470076 SULT1C3Q6IMI6 304 aa16.29■□□□□ 0.2
COL7A1-208ENST00000470076 ABHD17CQ6PCB6 329 aa16.29■□□□□ 0.2
COL7A1-208ENST00000470076 CAPN12Q6ZSI9 719 aa16.29■□□□□ 0.2
COL7A1-208ENST00000470076 FGD2Q7Z6J4 655 aa16.29■□□□□ 0.2
COL7A1-208ENST00000470076 TMEM132CQ8N3T6 1108 aa16.29■□□□□ 0.2
COL7A1-208ENST00000470076 FAM47BQ8NA70 645 aa16.29■□□□□ 0.2
COL7A1-208ENST00000470076 ZFP62Q8NB50 900 aaPredicted RBP16.29■□□□□ 0.2
COL7A1-208ENST00000470076 TMEM52Q8NDY8 209 aa16.29■□□□□ 0.2
COL7A1-208ENST00000470076 WDR34Q96EX3 536 aa16.29■□□□□ 0.2
COL7A1-208ENST00000470076 PTCD3Q96EY7 689 aaKnown RBP16.29■□□□□ 0.2
COL7A1-208ENST00000470076 DMRTA2Q96SC8 542 aa16.29■□□□□ 0.2
COL7A1-208ENST00000470076 KRT12Q99456 494 aa16.29■□□□□ 0.2
COL7A1-208ENST00000470076 EFCAB11Q9BUY7 163 aa16.29■□□□□ 0.2
COL7A1-208ENST00000470076 TRIM8Q9BZR9 551 aa16.29■□□□□ 0.2
COL7A1-208ENST00000470076 COPS7BQ9H9Q2 264 aaPredicted RBP16.29■□□□□ 0.2
COL7A1-208ENST00000470076 CAB39LQ9H9S4 337 aa16.29■□□□□ 0.2
COL7A1-208ENST00000470076 TIMMDC1Q9NPL8 285 aa16.29■□□□□ 0.2
COL7A1-208ENST00000470076 DAPP1Q9UN19 280 aa16.29■□□□□ 0.2
COL7A1-208ENST00000470076 CCDC168Q8NDH2 2452 aa16.29■□□□□ 0.2
COL7A1-208ENST00000470076 CYR61O00622 381 aa16.28■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms