RNA–Protein interactions for RNA: ENST00000469054.1

VPS13D-204, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 567 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-204ENST00000469054 SHCBP1LQ9BZQ2 653 aa11.29□□□□□ -0.6
VPS13D-204ENST00000469054 COPS7BQ9H9Q2 264 aaPredicted RBP11.29□□□□□ -0.6
VPS13D-204ENST00000469054 BRF2Q9HAW0 419 aa11.29□□□□□ -0.6
VPS13D-204ENST00000469054 EML4Q9HC35 981 aaKnown RBP11.29□□□□□ -0.6
VPS13D-204ENST00000469054 MLXIPLQ9NP71 852 aa11.29□□□□□ -0.6
VPS13D-204ENST00000469054 TNFRSF12AQ9NP84 129 aa11.29□□□□□ -0.6
VPS13D-204ENST00000469054 NKIRAS1Q9NYS0 192 aa11.29□□□□□ -0.6
VPS13D-204ENST00000469054 AHSPQ9NZD4 102 aa11.29□□□□□ -0.6
VPS13D-204ENST00000469054 LAMA5O15230 3695 aa11.28□□□□□ -0.6
VPS13D-204ENST00000469054 HMGB1P1B2RPK0 211 aaPredicted RBP11.28□□□□□ -0.6
VPS13D-204ENST00000469054 PSMD12O00232 456 aaPredicted RBP11.28□□□□□ -0.6
VPS13D-204ENST00000469054 PLPP1O14494 284 aa11.28□□□□□ -0.6
VPS13D-204ENST00000469054 CRCPO75575 148 aa11.28□□□□□ -0.6
VPS13D-204ENST00000469054 SCELO95171 688 aa11.28□□□□□ -0.6
VPS13D-204ENST00000469054 IGHEP01854 428 aa11.28□□□□□ -0.6
VPS13D-204ENST00000469054 SERPINE1P05121 402 aa11.28□□□□□ -0.6
VPS13D-204ENST00000469054 CHRNGP07510 517 aa11.28□□□□□ -0.6
VPS13D-204ENST00000469054 HEXBP07686 556 aa11.28□□□□□ -0.6
VPS13D-204ENST00000469054 FHP07954 510 aa11.28□□□□□ -0.6
VPS13D-204ENST00000469054 UROSP10746 265 aa11.28□□□□□ -0.6
VPS13D-204ENST00000469054 RNH1P13489 461 aaKnown RBP11.28□□□□□ -0.6
VPS13D-204ENST00000469054 HSD3B1P14060 373 aa11.28□□□□□ -0.6
VPS13D-204ENST00000469054 HIST1H1TP22492 207 aaPredicted RBP11.28□□□□□ -0.6
VPS13D-204ENST00000469054 HSD3B2P26439 372 aa11.28□□□□□ -0.6
VPS13D-204ENST00000469054 CERS1P27544 350 aa11.28□□□□□ -0.6
VPS13D-204ENST00000469054 SERPINB3P29508 390 aa11.28□□□□□ -0.6
VPS13D-204ENST00000469054 OTX2P32243 289 aa11.28□□□□□ -0.6
VPS13D-204ENST00000469054 SSR2P43308 183 aa11.28□□□□□ -0.6
VPS13D-204ENST00000469054 TSFMP43897 325 aaKnown RBP11.28□□□□□ -0.6
VPS13D-204ENST00000469054 EMP2P54851 167 aa11.28□□□□□ -0.6
VPS13D-204ENST00000469054 CHI3L2Q15782 390 aa11.28□□□□□ -0.6
VPS13D-204ENST00000469054 RAB43Q86YS6 212 aa11.28□□□□□ -0.6
VPS13D-204ENST00000469054 ZCCHC7Q8N3Z6 543 aaKnown RBP11.28□□□□□ -0.6
VPS13D-204ENST00000469054 ACOT4Q8N9L9 421 aa11.28□□□□□ -0.6
VPS13D-204ENST00000469054 MGARPQ8TDB4 240 aa11.28□□□□□ -0.6
VPS13D-204ENST00000469054 HBEGFQ99075 208 aa11.28□□□□□ -0.6
VPS13D-204ENST00000469054 CRB3Q9BUF7 120 aa11.28□□□□□ -0.6
VPS13D-204ENST00000469054 SORBS1Q9BX66 1292 aaKnown RBP11.28□□□□□ -0.6
VPS13D-204ENST00000469054 ACBD3Q9H3P7 528 aa11.28□□□□□ -0.6
VPS13D-204ENST00000469054 SEMA3GQ9NS98 782 aa11.28□□□□□ -0.6
VPS13D-204ENST00000469054 ZNF446Q9NWS9 450 aa11.28□□□□□ -0.6
VPS13D-204ENST00000469054 NMRK1Q9NWW6 199 aa11.28□□□□□ -0.6
VPS13D-204ENST00000469054 C3orf18Q9UK00 162 aa11.28□□□□□ -0.6
VPS13D-204ENST00000469054 DAPP1Q9UN19 280 aa11.28□□□□□ -0.6
VPS13D-204ENST00000469054 SLC12A4Q9UP95 1085 aa11.28□□□□□ -0.6
VPS13D-204ENST00000469054 POLHQ9Y253 713 aa11.28□□□□□ -0.6
VPS13D-204ENST00000469054 MAP1BP46821 2468 aaKnown RBP11.28□□□□□ -0.6
VPS13D-204ENST00000469054 ZFHX4Q86UP3 3567 aa11.27□□□□□ -0.6
VPS13D-204ENST00000469054 DMXL2Q8TDJ6 3036 aa11.27□□□□□ -0.61
VPS13D-204ENST00000469054 SERTM1A2A2V5 107 aa11.27□□□□□ -0.61
VPS13D-204ENST00000469054 IDSB3KWA1 339 aa11.27□□□□□ -0.61
VPS13D-204ENST00000469054 AZIN1O14977 448 aa11.27□□□□□ -0.61
VPS13D-204ENST00000469054 CYC1P08574 325 aa11.27□□□□□ -0.61
VPS13D-204ENST00000469054 FGF4P08620 206 aa11.27□□□□□ -0.61
VPS13D-204ENST00000469054 NEFHP12036 1026 aa11.27□□□□□ -0.61
VPS13D-204ENST00000469054 JAK1P23458 1154 aa11.27□□□□□ -0.61
VPS13D-204ENST00000469054 GRK2P25098 689 aa11.27□□□□□ -0.61
VPS13D-204ENST00000469054 ARRB2P32121 409 aa11.27□□□□□ -0.61
VPS13D-204ENST00000469054 BSGP35613 385 aa11.27□□□□□ -0.61
VPS13D-204ENST00000469054 HTR6P50406 440 aa11.27□□□□□ -0.61
VPS13D-204ENST00000469054 LIM2P55344 173 aa11.27□□□□□ -0.61
VPS13D-204ENST00000469054 RAB38P57729 211 aa11.27□□□□□ -0.61
VPS13D-204ENST00000469054 ABRAXAS2Q15018 415 aa11.27□□□□□ -0.61
VPS13D-204ENST00000469054 DEFB109BQ30KR1 87 aa11.27□□□□□ -0.61
VPS13D-204ENST00000469054 TUBB8Q3ZCM7 444 aa11.27□□□□□ -0.61
VPS13D-204ENST00000469054 MINDY4Q4G0A6 757 aa11.27□□□□□ -0.61
VPS13D-204ENST00000469054 CLEC6AQ6EIG7 209 aa11.27□□□□□ -0.61
VPS13D-204ENST00000469054 ATG14Q6ZNE5 492 aa11.27□□□□□ -0.61
VPS13D-204ENST00000469054 MED25Q71SY5 747 aa11.27□□□□□ -0.61
VPS13D-204ENST00000469054 PPP1R32Q7Z5V6 425 aa11.27□□□□□ -0.61
VPS13D-204ENST00000469054 HOMEZQ8IX15 550 aa11.27□□□□□ -0.61
VPS13D-204ENST00000469054 CLYBLQ8N0X4 340 aa11.27□□□□□ -0.61
VPS13D-204ENST00000469054 GBP7Q8N8V2 638 aaPredicted RBP11.27□□□□□ -0.61
VPS13D-204ENST00000469054 ADAMTS18Q8TE60 1221 aa11.27□□□□□ -0.61
VPS13D-204ENST00000469054 IP6K3Q96PC2 410 aa11.27□□□□□ -0.61
VPS13D-204ENST00000469054 ZNF717Q9BY31 904 aaPredicted RBP11.27□□□□□ -0.61
VPS13D-204ENST00000469054 RBCK1Q9BYM8 510 aa11.27□□□□□ -0.61
VPS13D-204ENST00000469054 VN1R1Q9GZP7 353 aa11.27□□□□□ -0.61
VPS13D-204ENST00000469054 DDX31Q9H8H2 851 aaKnown RBP11.27□□□□□ -0.61
VPS13D-204ENST00000469054 LYRM4Q9HD34 91 aa11.27□□□□□ -0.61
VPS13D-204ENST00000469054 LANCL2Q9NS86 450 aa11.27□□□□□ -0.61
VPS13D-204ENST00000469054 VPS29Q9UBQ0 182 aa11.27□□□□□ -0.61
VPS13D-204ENST00000469054 MKL2Q9ULH7 1088 aa11.27□□□□□ -0.61
VPS13D-204ENST00000469054 A0A0A6YYD5 115 aa11.26□□□□□ -0.61
VPS13D-204ENST00000469054 TMEM114B3SHH9 223 aa11.26□□□□□ -0.61
VPS13D-204ENST00000469054 FAM227AF5H4B4 570 aa11.26□□□□□ -0.61
VPS13D-204ENST00000469054 PEX12O00623 359 aa11.26□□□□□ -0.61
VPS13D-204ENST00000469054 PCDH17O14917 1159 aa11.26□□□□□ -0.61
VPS13D-204ENST00000469054 B4GALT2O60909 372 aa11.26□□□□□ -0.61
VPS13D-204ENST00000469054 ALOX12BO75342 701 aa11.26□□□□□ -0.61
VPS13D-204ENST00000469054 EEDO75530 441 aaKnown RBP11.26□□□□□ -0.61
VPS13D-204ENST00000469054 CDC123O75794 336 aaPredicted RBP11.26□□□□□ -0.61
VPS13D-204ENST00000469054 ITGB2P05107 769 aa11.26□□□□□ -0.61
VPS13D-204ENST00000469054 CHN1P15882 459 aa11.26□□□□□ -0.61
VPS13D-204ENST00000469054 BGNP21810 368 aa11.26□□□□□ -0.61
VPS13D-204ENST00000469054 EFNA3P52797 238 aa11.26□□□□□ -0.61
VPS13D-204ENST00000469054 ABCE1P61221 599 aaKnown RBP11.26□□□□□ -0.61
VPS13D-204ENST00000469054 TBL3Q12788 808 aaKnown RBP11.26□□□□□ -0.61
VPS13D-204ENST00000469054 CSTF3Q12996 717 aaKnown RBP11.26□□□□□ -0.61
VPS13D-204ENST00000469054 SLAMF1Q13291 335 aa11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms