RNA–Protein interactions for RNA: ENST00000469003.5

CCDC28B-204, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 2

Gene CCDC28B, Length 1,235 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-204ENST00000469003 QRFPRQ96P65 431 aa15.49■□□□□ 0.07
CCDC28B-204ENST00000469003 RBBP8Q99708 897 aa15.49■□□□□ 0.07
CCDC28B-204ENST00000469003 DEFB126Q9BYW3 111 aa15.49■□□□□ 0.07
CCDC28B-204ENST00000469003 TSPAN10Q9H1Z9 355 aaPredicted RBP15.49■□□□□ 0.07
CCDC28B-204ENST00000469003 NPIPA1Q9UND3 350 aa15.49■□□□□ 0.07
CCDC28B-204ENST00000469003 CSMD1Q96PZ7 3565 aa15.49■□□□□ 0.07
CCDC28B-204ENST00000469003 OTOGQ6ZRI0 2925 aa15.48■□□□□ 0.07
CCDC28B-204ENST00000469003 TCRBV9S1A1TA0A576 114 aa15.48■□□□□ 0.07
CCDC28B-204ENST00000469003 FAM159BA6NKW6 160 aa15.48■□□□□ 0.07
CCDC28B-204ENST00000469003 CLDN4O14493 209 aa15.48■□□□□ 0.07
CCDC28B-204ENST00000469003 CLGNO14967 610 aa15.48■□□□□ 0.07
CCDC28B-204ENST00000469003 ASNA1O43681 348 aa15.48■□□□□ 0.07
CCDC28B-204ENST00000469003 B3GALT2O43825 422 aa15.48■□□□□ 0.07
CCDC28B-204ENST00000469003 GSTA2P09210 222 aa15.48■□□□□ 0.07
CCDC28B-204ENST00000469003 STMN1P16949 149 aa15.48■□□□□ 0.07
CCDC28B-204ENST00000469003 GP5P40197 560 aa15.48■□□□□ 0.07
CCDC28B-204ENST00000469003 HSPA7P48741 367 aa15.48■□□□□ 0.07
CCDC28B-204ENST00000469003 HLCSP50747 726 aa15.48■□□□□ 0.07
CCDC28B-204ENST00000469003 CLCN2P51788 898 aa15.48■□□□□ 0.07
CCDC28B-204ENST00000469003 HSD17B7P56937 341 aa15.48■□□□□ 0.07
CCDC28B-204ENST00000469003 OR4D1Q15615 310 aa15.48■□□□□ 0.07
CCDC28B-204ENST00000469003 TRIM40Q6P9F5 258 aa15.48■□□□□ 0.07
CCDC28B-204ENST00000469003 BNC2Q6ZN30 1099 aaPredicted RBP15.48■□□□□ 0.07
CCDC28B-204ENST00000469003 VN1R5Q7Z5H4 357 aa15.48■□□□□ 0.07
CCDC28B-204ENST00000469003 SPPL2CQ8IUH8 684 aa15.48■□□□□ 0.07
CCDC28B-204ENST00000469003 PDPRQ8NCN5 879 aa15.48■□□□□ 0.07
CCDC28B-204ENST00000469003 SPATA4Q8NEY3 305 aa15.48■□□□□ 0.07
CCDC28B-204ENST00000469003 OR2L5Q8NG80 312 aa15.48■□□□□ 0.07
CCDC28B-204ENST00000469003 ANP32BQ92688 251 aaKnown RBP15.48■□□□□ 0.07
CCDC28B-204ENST00000469003 TMEM125Q96AQ2 219 aa15.48■□□□□ 0.07
CCDC28B-204ENST00000469003 PTCD3Q96EY7 689 aaKnown RBP15.48■□□□□ 0.07
CCDC28B-204ENST00000469003 REXO4Q9GZR2 422 aaKnown RBP15.48■□□□□ 0.07
CCDC28B-204ENST00000469003 PRTFDC1Q9NRG1 225 aa15.48■□□□□ 0.07
CCDC28B-204ENST00000469003 TINAGQ9UJW2 476 aa15.48■□□□□ 0.07
CCDC28B-204ENST00000469003 PPIEQ9UNP9 301 aaKnown RBP15.48■□□□□ 0.07
CCDC28B-204ENST00000469003 MRPS33Q9Y291 106 aaKnown RBP15.48■□□□□ 0.07
CCDC28B-204ENST00000469003 CLDN16Q9Y5I7 305 aa15.48■□□□□ 0.07
CCDC28B-204ENST00000469003 F8P00451 2351 aa15.48■□□□□ 0.07
CCDC28B-204ENST00000469003 TRBV11-1A0A0K0K1C0 115 aa15.47■□□□□ 0.07
CCDC28B-204ENST00000469003 RAD51CO43502 376 aa15.47■□□□□ 0.07
CCDC28B-204ENST00000469003 PRAMEF4O60810 478 aa15.47■□□□□ 0.07
CCDC28B-204ENST00000469003 STK16O75716 305 aa15.47■□□□□ 0.07
CCDC28B-204ENST00000469003 MYO1DO94832 1006 aa15.47■□□□□ 0.07
CCDC28B-204ENST00000469003 TBX6O95947 436 aaPredicted RBP15.47■□□□□ 0.07
CCDC28B-204ENST00000469003 ESRRAP11474 423 aaPredicted RBP15.47■□□□□ 0.07
CCDC28B-204ENST00000469003 GRNP28799 593 aaKnown RBP15.47■□□□□ 0.07
CCDC28B-204ENST00000469003 ADORA2A-AS1P86434 159 aa15.47■□□□□ 0.07
CCDC28B-204ENST00000469003 ZKSCAN8Q15776 578 aaPredicted RBP15.47■□□□□ 0.07
CCDC28B-204ENST00000469003 FBXO48Q5FWF7 155 aa15.47■□□□□ 0.07
CCDC28B-204ENST00000469003 PRAMEF9Q5VWM5 478 aa15.47■□□□□ 0.07
CCDC28B-204ENST00000469003 XKRXQ6PP77 449 aa15.47■□□□□ 0.07
CCDC28B-204ENST00000469003 C3orf62Q6ZUJ4 267 aa15.47■□□□□ 0.07
CCDC28B-204ENST00000469003 ZNF595Q8IYB9 648 aa15.47■□□□□ 0.07
CCDC28B-204ENST00000469003 GHDCQ8N2G8 530 aa15.47■□□□□ 0.07
CCDC28B-204ENST00000469003 SNX31Q8N9S9 440 aa15.47■□□□□ 0.07
CCDC28B-204ENST00000469003 KIAA1191Q96A73 305 aa15.47■□□□□ 0.07
CCDC28B-204ENST00000469003 ESAMQ96AP7 390 aa15.47■□□□□ 0.07
CCDC28B-204ENST00000469003 WDR34Q96EX3 536 aa15.47■□□□□ 0.07
CCDC28B-204ENST00000469003 VMP1Q96GC9 406 aa15.47■□□□□ 0.07
CCDC28B-204ENST00000469003 UBXN10Q96LJ8 280 aa15.47■□□□□ 0.07
CCDC28B-204ENST00000469003 SERINC2Q96SA4 455 aa15.47■□□□□ 0.07
CCDC28B-204ENST00000469003 EFCAB11Q9BUY7 163 aa15.47■□□□□ 0.07
CCDC28B-204ENST00000469003 RUBCNLQ9H714 662 aa15.47■□□□□ 0.07
CCDC28B-204ENST00000469003 PNO1Q9NRX1 252 aaKnown RBP15.47■□□□□ 0.07
CCDC28B-204ENST00000469003 GRHL1Q9NZI5 618 aa15.47■□□□□ 0.07
CCDC28B-204ENST00000469003 CD274Q9NZQ7 290 aa15.47■□□□□ 0.07
CCDC28B-204ENST00000469003 PTBP2Q9UKA9 531 aaKnown RBP15.47■□□□□ 0.07
CCDC28B-204ENST00000469003 ZNF490Q9ULM2 529 aaPredicted RBP15.47■□□□□ 0.07
CCDC28B-204ENST00000469003 KLF13Q9Y2Y9 288 aaPredicted RBP15.47■□□□□ 0.07
CCDC28B-204ENST00000469003 ITPR3Q14573 2671 aa15.47■□□□□ 0.07
CCDC28B-204ENST00000469003 NCOA6Q14686 2063 aaPredicted RBP15.47■□□□□ 0.07
CCDC28B-204ENST00000469003 SETD2Q9BYW2 2564 aaPredicted RBP15.46■□□□□ 0.07
CCDC28B-204ENST00000469003 SYNDIG1LA6NDD5 238 aa15.46■□□□□ 0.07
CCDC28B-204ENST00000469003 TGFBR3LH3BV60 316 aa15.46■□□□□ 0.07
CCDC28B-204ENST00000469003 C1QAP02745 245 aa15.46■□□□□ 0.07
CCDC28B-204ENST00000469003 PRF1P14222 555 aa15.46■□□□□ 0.07
CCDC28B-204ENST00000469003 ZNF24P17028 368 aa15.46■□□□□ 0.07
CCDC28B-204ENST00000469003 AGAP20933 346 aa15.46■□□□□ 0.07
CCDC28B-204ENST00000469003 GPR143P51810 404 aa15.46■□□□□ 0.07
CCDC28B-204ENST00000469003 HNRNPFP52597 415 aaKnown RBP15.46■□□□□ 0.07
CCDC28B-204ENST00000469003 PLA2G16P53816 162 aa15.46■□□□□ 0.07
CCDC28B-204ENST00000469003 MTTPP55157 894 aa15.46■□□□□ 0.07
CCDC28B-204ENST00000469003 GPX6P59796 221 aa15.46■□□□□ 0.07
CCDC28B-204ENST00000469003 RAB10P61026 200 aa15.46■□□□□ 0.07
CCDC28B-204ENST00000469003 TGM3Q08188 693 aa15.46■□□□□ 0.07
CCDC28B-204ENST00000469003 SLC13A2Q13183 592 aa15.46■□□□□ 0.07
CCDC28B-204ENST00000469003 LAPTM5Q13571 262 aa15.46■□□□□ 0.07
CCDC28B-204ENST00000469003 DOC2AQ14183 400 aa15.46■□□□□ 0.07
CCDC28B-204ENST00000469003 PDK4Q16654 411 aa15.46■□□□□ 0.07
CCDC28B-204ENST00000469003 ZNF630Q2M218 657 aaPredicted RBP15.46■□□□□ 0.07
CCDC28B-204ENST00000469003 XKR6Q5GH73 641 aa15.46■□□□□ 0.07
CCDC28B-204ENST00000469003 ABHD17CQ6PCB6 329 aa15.46■□□□□ 0.07
CCDC28B-204ENST00000469003 CPSF7Q8N684 471 aaKnown RBP15.46■□□□□ 0.07
CCDC28B-204ENST00000469003 FAM47BQ8NA70 645 aa15.46■□□□□ 0.07
CCDC28B-204ENST00000469003 POGLUT1Q8NBL1 392 aa15.46■□□□□ 0.07
CCDC28B-204ENST00000469003 TMEM52Q8NDY8 209 aa15.46■□□□□ 0.07
CCDC28B-204ENST00000469003 PHACTR1Q9C0D0 580 aa15.46■□□□□ 0.07
CCDC28B-204ENST00000469003 CHST11Q9NPF2 352 aa15.46■□□□□ 0.07
CCDC28B-204ENST00000469003 ADAP2Q9NPF8 381 aa15.46■□□□□ 0.07
CCDC28B-204ENST00000469003 ZNF223Q9UK11 482 aaPredicted RBP15.46■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms