RNA–Protein interactions for RNA: ENST00000458268.5

USP39-209, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 4

Gene USP39, Length 751 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-209ENST00000458268 RAB38P57729 211 aa17.56■□□□□ 0.4
USP39-209ENST00000458268 RPS13P62277 151 aaKnown RBP17.56■□□□□ 0.4
USP39-209ENST00000458268 VSNL1P62760 191 aa17.56■□□□□ 0.4
USP39-209ENST00000458268 KCNC4Q03721 635 aa17.56■□□□□ 0.4
USP39-209ENST00000458268 SLC13A2Q13183 592 aa17.56■□□□□ 0.4
USP39-209ENST00000458268 AP5B1Q2VPB7 878 aa17.56■□□□□ 0.4
USP39-209ENST00000458268 SGO1Q5FBB7 561 aa17.56■□□□□ 0.4
USP39-209ENST00000458268 CHSY3Q70JA7 882 aa17.56■□□□□ 0.4
USP39-209ENST00000458268 LAS2Q8IYD9 372 aa17.56■□□□□ 0.4
USP39-209ENST00000458268 PLPP5Q8NEB5 264 aa17.56■□□□□ 0.4
USP39-209ENST00000458268 OR52B6Q8NGF0 335 aa17.56■□□□□ 0.4
USP39-209ENST00000458268 EPS8L3Q8TE67 593 aaKnown RBP17.56■□□□□ 0.4
USP39-209ENST00000458268 SREK1Q8WXA9 508 aaKnown RBP17.56■□□□□ 0.4
USP39-209ENST00000458268 CMTM7Q96FZ5 175 aa17.56■□□□□ 0.4
USP39-209ENST00000458268 SEC16BQ96JE7 1060 aa17.56■□□□□ 0.4
USP39-209ENST00000458268 QRFPRQ96P65 431 aa17.56■□□□□ 0.4
USP39-209ENST00000458268 SERINC2Q96SA4 455 aa17.56■□□□□ 0.4
USP39-209ENST00000458268 NECTIN3Q9NQS3 549 aa17.56■□□□□ 0.4
USP39-209ENST00000458268 PRTFDC1Q9NRG1 225 aa17.56■□□□□ 0.4
USP39-209ENST00000458268 PNO1Q9NRX1 252 aaKnown RBP17.56■□□□□ 0.4
USP39-209ENST00000458268 PCTPQ9UKL6 214 aa17.56■□□□□ 0.4
USP39-209ENST00000458268 MRPS33Q9Y291 106 aaKnown RBP17.56■□□□□ 0.4
USP39-209ENST00000458268 A0A1W2PPM1 405 aa17.55■□□□□ 0.4
USP39-209ENST00000458268 TLDC2A0PJX2 215 aa17.55■□□□□ 0.4
USP39-209ENST00000458268 A8MT66 165 aa17.55■□□□□ 0.4
USP39-209ENST00000458268 ESPNB1AK53 854 aa17.55■□□□□ 0.4
USP39-209ENST00000458268 CLDN9O95484 217 aa17.55■□□□□ 0.4
USP39-209ENST00000458268 ICAM2P13598 275 aa17.55■□□□□ 0.4
USP39-209ENST00000458268 TNFRSF8P28908 595 aa17.55■□□□□ 0.4
USP39-209ENST00000458268 HNRNPFP52597 415 aaKnown RBP17.55■□□□□ 0.4
USP39-209ENST00000458268 CDH13P55290 713 aa17.55■□□□□ 0.4
USP39-209ENST00000458268 MFAP5Q13361 173 aa17.55■□□□□ 0.4
USP39-209ENST00000458268 ZRSR2Q15696 482 aaKnown RBP17.55■□□□□ 0.4
USP39-209ENST00000458268 ADPRMQ3LIE5 342 aa17.55■□□□□ 0.4
USP39-209ENST00000458268 CRB2Q5IJ48 1285 aa17.55■□□□□ 0.4
USP39-209ENST00000458268 ABHD17BQ5VST6 288 aa17.55■□□□□ 0.4
USP39-209ENST00000458268 KHDRBS2Q5VWX1 349 aaKnown RBP17.55■□□□□ 0.4
USP39-209ENST00000458268 LIPJQ5W064 366 aa17.55■□□□□ 0.4
USP39-209ENST00000458268 TIFABQ6ZNK6 161 aa17.55■□□□□ 0.4
USP39-209ENST00000458268 IQCKQ8N0W5 287 aa17.55■□□□□ 0.4
USP39-209ENST00000458268 CISD2Q8N5K1 135 aaKnown RBP17.55■□□□□ 0.4
USP39-209ENST00000458268 Q8NA96 180 aa17.55■□□□□ 0.4
USP39-209ENST00000458268 REPS1Q96D71 796 aa17.55■□□□□ 0.4
USP39-209ENST00000458268 IMMP1LQ96LU5 166 aa17.55■□□□□ 0.4
USP39-209ENST00000458268 KCNC2Q96PR1 638 aa17.55■□□□□ 0.4
USP39-209ENST00000458268 CSF3RQ99062 836 aa17.55■□□□□ 0.4
USP39-209ENST00000458268 CENPKQ9BS16 269 aa17.55■□□□□ 0.4
USP39-209ENST00000458268 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP17.55■□□□□ 0.4
USP39-209ENST00000458268 DMRT3Q9NQL9 472 aa17.55■□□□□ 0.4
USP39-209ENST00000458268 PRDM9Q9NQV7 894 aa17.55■□□□□ 0.4
USP39-209ENST00000458268 PCDHGA11Q9Y5H2 935 aa17.55■□□□□ 0.4
USP39-209ENST00000458268 CPAMD8Q8IZJ3 1885 aa17.54■□□□□ 0.4
USP39-209ENST00000458268 CNTRLQ7Z7A1 2325 aa17.54■□□□□ 0.4
USP39-209ENST00000458268 DYTNA2CJ06 578 aa17.54■□□□□ 0.4
USP39-209ENST00000458268 STX16-NPEPL1H3BU86 382 aa17.54■□□□□ 0.4
USP39-209ENST00000458268 OR7A17O14581 309 aa17.54■□□□□ 0.4
USP39-209ENST00000458268 STX16O14662 325 aa17.54■□□□□ 0.4
USP39-209ENST00000458268 ZNF500O60304 480 aaPredicted RBP17.54■□□□□ 0.4
USP39-209ENST00000458268 SORBS2O94875 1100 aaKnown RBP17.54■□□□□ 0.4
USP39-209ENST00000458268 CYC1P08574 325 aa17.54■□□□□ 0.4
USP39-209ENST00000458268 LIM2P55344 173 aa17.54■□□□□ 0.4
USP39-209ENST00000458268 AP2B1P63010 937 aa17.54■□□□□ 0.4
USP39-209ENST00000458268 FOXK1P85037 733 aa17.54■□□□□ 0.4
USP39-209ENST00000458268 INPP5JQ15735 1006 aaPredicted RBP17.54■□□□□ 0.4
USP39-209ENST00000458268 FAM219BQ5XKK7 198 aa17.54■□□□□ 0.4
USP39-209ENST00000458268 ZNF793Q6ZN11 406 aa17.54■□□□□ 0.4
USP39-209ENST00000458268 QSOX2Q6ZRP7 698 aa17.54■□□□□ 0.4
USP39-209ENST00000458268 RIPOR1Q6ZS17 1223 aa17.54■□□□□ 0.4
USP39-209ENST00000458268 ATCAYQ86WG3 371 aa17.54■□□□□ 0.4
USP39-209ENST00000458268 EIF1ADQ8N9N8 165 aaKnown RBP17.54■□□□□ 0.4
USP39-209ENST00000458268 TMEM52Q8NDY8 209 aa17.54■□□□□ 0.4
USP39-209ENST00000458268 CATSPER1Q8NEC5 780 aa17.54■□□□□ 0.4
USP39-209ENST00000458268 SRFBP1Q8NEF9 429 aaKnown RBP17.54■□□□□ 0.4
USP39-209ENST00000458268 OR2W6PQ8NHA6 318 aa17.54■□□□□ 0.4
USP39-209ENST00000458268 PSMF1Q92530 271 aa17.54■□□□□ 0.4
USP39-209ENST00000458268 MAPKAP1Q9BPZ7 522 aa17.54■□□□□ 0.4
USP39-209ENST00000458268 TBCDQ9BTW9 1192 aa17.54■□□□□ 0.4
USP39-209ENST00000458268 NPLQ9BXD5 320 aaPredicted RBP17.54■□□□□ 0.4
USP39-209ENST00000458268 ROGDIQ9GZN7 287 aa17.54■□□□□ 0.4
USP39-209ENST00000458268 CLMPQ9H6B4 373 aa17.54■□□□□ 0.4
USP39-209ENST00000458268 CLK4Q9HAZ1 481 aaKnown RBP17.54■□□□□ 0.4
USP39-209ENST00000458268 HELZ2Q9BYK8 2649 aaKnown RBP17.53■□□□□ 0.4
USP39-209ENST00000458268 NBASA2RRP1 2371 aa17.53■□□□□ 0.4
USP39-209ENST00000458268 A0A1W2PQ72 361 aa17.53■□□□□ 0.4
USP39-209ENST00000458268 CLDN4O14493 209 aa17.53■□□□□ 0.4
USP39-209ENST00000458268 VPS4BO75351 444 aa17.53■□□□□ 0.4
USP39-209ENST00000458268 SUPT7LO94864 414 aa17.53■□□□□ 0.4
USP39-209ENST00000458268 IFNA16P05015 189 aa17.53■□□□□ 0.4
USP39-209ENST00000458268 SBK3P0C264 359 aa17.53■□□□□ 0.4
USP39-209ENST00000458268 CPN2P22792 545 aa17.53■□□□□ 0.4
USP39-209ENST00000458268 ATP5A1P25705 553 aaKnown RBP17.53■□□□□ 0.4
USP39-209ENST00000458268 PPP2R1BP30154 601 aa17.53■□□□□ 0.4
USP39-209ENST00000458268 SERPINB1P30740 379 aa17.53■□□□□ 0.4
USP39-209ENST00000458268 HSD17B3P37058 310 aa17.53■□□□□ 0.4
USP39-209ENST00000458268 SLC26A5P58743 744 aa17.53■□□□□ 0.4
USP39-209ENST00000458268 ID2Q02363 134 aa17.53■□□□□ 0.4
USP39-209ENST00000458268 EXT1Q16394 746 aa17.53■□□□□ 0.4
USP39-209ENST00000458268 TMEM35AQ53FP2 167 aa17.53■□□□□ 0.4
USP39-209ENST00000458268 PLAG1Q6DJT9 500 aa17.53■□□□□ 0.4
USP39-209ENST00000458268 IGFL3Q6UXB1 125 aa17.53■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms