RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 ASB7Q9H672 318 aa4.61□□□□□ -1.67
CCDC88A-209ENST00000456975 CHODLQ9H9P2 273 aa4.61□□□□□ -1.67
CCDC88A-209ENST00000456975 NECTIN3Q9NQS3 549 aa4.61□□□□□ -1.67
CCDC88A-209ENST00000456975 PNO1Q9NRX1 252 aaKnown RBP4.61□□□□□ -1.67
CCDC88A-209ENST00000456975 ABCB8Q9NUT2 735 aa4.61□□□□□ -1.67
CCDC88A-209ENST00000456975 MAT2BQ9NZL9 334 aa4.61□□□□□ -1.67
CCDC88A-209ENST00000456975 EIF3KQ9UBQ5 218 aaKnown RBP4.61□□□□□ -1.67
CCDC88A-209ENST00000456975 SIX4Q9UIU6 781 aa4.61□□□□□ -1.67
CCDC88A-209ENST00000456975 GABRQQ9UN88 632 aa4.61□□□□□ -1.67
CCDC88A-209ENST00000456975 SLC5A6Q9Y289 635 aa4.61□□□□□ -1.67
CCDC88A-209ENST00000456975 KCNE2Q9Y6J6 123 aa4.61□□□□□ -1.67
CCDC88A-209ENST00000456975 UNC80Q8N2C7 3258 aa4.61□□□□□ -1.67
CCDC88A-209ENST00000456975 UBE4BO95155 1302 aa4.6□□□□□ -1.67
CCDC88A-209ENST00000456975 MAST2Q6P0Q8 1798 aa4.6□□□□□ -1.67
CCDC88A-209ENST00000456975 TRABD2BA6NFA1 517 aa4.6□□□□□ -1.67
CCDC88A-209ENST00000456975 ANKDD1BA6NHY2 528 aa4.6□□□□□ -1.67
CCDC88A-209ENST00000456975 RFPL4AA6NLU0 287 aa4.6□□□□□ -1.67
CCDC88A-209ENST00000456975 CCT8L1PA6NM43 557 aa4.6□□□□□ -1.67
CCDC88A-209ENST00000456975 DRGXA6NNA5 263 aa4.6□□□□□ -1.67
CCDC88A-209ENST00000456975 A8MU76 341 aa4.6□□□□□ -1.67
CCDC88A-209ENST00000456975 LRRN3E7EW58 273 aa4.6□□□□□ -1.67
CCDC88A-209ENST00000456975 RFPL4AL1F8VTS6 287 aa4.6□□□□□ -1.67
CCDC88A-209ENST00000456975 HAS3O00219 553 aa4.6□□□□□ -1.67
CCDC88A-209ENST00000456975 GPAA1O43292 621 aa4.6□□□□□ -1.67
CCDC88A-209ENST00000456975 BUD23O43709 281 aaKnown RBP4.6□□□□□ -1.67
CCDC88A-209ENST00000456975 NUAK1O60285 661 aa4.6□□□□□ -1.67
CCDC88A-209ENST00000456975 NRP2O60462 931 aa4.6□□□□□ -1.67
CCDC88A-209ENST00000456975 PSPNO60542 156 aa4.6□□□□□ -1.67
CCDC88A-209ENST00000456975 CTNSO60931 367 aa4.6□□□□□ -1.67
CCDC88A-209ENST00000456975 GPR32O75388 356 aa4.6□□□□□ -1.67
CCDC88A-209ENST00000456975 SAP30O75446 220 aa4.6□□□□□ -1.67
CCDC88A-209ENST00000456975 SCO1O75880 301 aa4.6□□□□□ -1.67
CCDC88A-209ENST00000456975 HOXD4P09016 255 aaPredicted RBP4.6□□□□□ -1.67
CCDC88A-209ENST00000456975 SBK2P0C263 348 aa4.6□□□□□ -1.67
CCDC88A-209ENST00000456975 OR2T7P0C7T2 308 aa4.6□□□□□ -1.67
CCDC88A-209ENST00000456975 LINC00614P0C842 121 aa4.6□□□□□ -1.67
CCDC88A-209ENST00000456975 SMIM6P0DI80 62 aa4.6□□□□□ -1.67
CCDC88A-209ENST00000456975 CALCBP10092 127 aa4.6□□□□□ -1.67
CCDC88A-209ENST00000456975 SAGP10523 405 aaPredicted RBP4.6□□□□□ -1.67
CCDC88A-209ENST00000456975 THRAP10827 490 aa4.6□□□□□ -1.67
CCDC88A-209ENST00000456975 CDH1P12830 882 aa4.6□□□□□ -1.67
CCDC88A-209ENST00000456975 CCL2P13500 99 aa4.6□□□□□ -1.67
CCDC88A-209ENST00000456975 CD36P16671 472 aa4.6□□□□□ -1.67
CCDC88A-209ENST00000456975 IGFBP5P24593 272 aa4.6□□□□□ -1.67
CCDC88A-209ENST00000456975 PIK3R1P27986 724 aa4.6□□□□□ -1.67
CCDC88A-209ENST00000456975 CASP1P29466 404 aa4.6□□□□□ -1.67
CCDC88A-209ENST00000456975 AVPR2P30518 371 aa4.6□□□□□ -1.67
CCDC88A-209ENST00000456975 GJC1P36383 396 aa4.6□□□□□ -1.67
CCDC88A-209ENST00000456975 AP3S2P59780 193 aa4.6□□□□□ -1.67
CCDC88A-209ENST00000456975 DLG4P78352 724 aa4.6□□□□□ -1.67
CCDC88A-209ENST00000456975 PUDPQ08623 228 aa4.6□□□□□ -1.67
CCDC88A-209ENST00000456975 LAPTM4AQ15012 233 aa4.6□□□□□ -1.67
CCDC88A-209ENST00000456975 SNAPC1Q16533 368 aa4.6□□□□□ -1.67
CCDC88A-209ENST00000456975 ZIK1Q3SY52 487 aaPredicted RBP4.6□□□□□ -1.67
CCDC88A-209ENST00000456975 CERKLQ49MI3 558 aaPredicted RBP4.6□□□□□ -1.67
CCDC88A-209ENST00000456975 NADK2Q4G0N4 442 aa4.6□□□□□ -1.67
CCDC88A-209ENST00000456975 TIGD5Q53EQ6 642 aa4.6□□□□□ -1.67
CCDC88A-209ENST00000456975 PRAMEF14Q5SWL7 426 aa4.6□□□□□ -1.67
CCDC88A-209ENST00000456975 MANEALQ5VSG8 457 aa4.6□□□□□ -1.67
CCDC88A-209ENST00000456975 AGAP7PQ5VUJ5 663 aa4.6□□□□□ -1.67
CCDC88A-209ENST00000456975 SEL1L3Q68CR1 1132 aa4.6□□□□□ -1.67
CCDC88A-209ENST00000456975 ELP2Q6IA86 826 aa4.6□□□□□ -1.67
CCDC88A-209ENST00000456975 TEPPQ6URK8 271 aa4.6□□□□□ -1.67
CCDC88A-209ENST00000456975 PLEKHG7Q6ZR37 379 aa4.6□□□□□ -1.67
CCDC88A-209ENST00000456975 RBM43Q6ZSC3 357 aaKnown RBP4.6□□□□□ -1.67
CCDC88A-209ENST00000456975 PRSS42Q7Z5A4 293 aa4.6□□□□□ -1.67
CCDC88A-209ENST00000456975 ZNF589Q86UQ0 364 aaPredicted RBP4.6□□□□□ -1.67
CCDC88A-209ENST00000456975 WDR5BQ86VZ2 330 aa4.6□□□□□ -1.67
CCDC88A-209ENST00000456975 DHFR2Q86XF0 187 aa4.6□□□□□ -1.67
CCDC88A-209ENST00000456975 PROSER1Q86XN7 944 aa4.6□□□□□ -1.67
CCDC88A-209ENST00000456975 ZNF573Q86YE8 665 aa4.6□□□□□ -1.67
CCDC88A-209ENST00000456975 NPAS3Q8IXF0 933 aa4.6□□□□□ -1.67
CCDC88A-209ENST00000456975 C4orf33Q8N1A6 199 aa4.6□□□□□ -1.67
CCDC88A-209ENST00000456975 SIX6OS1Q8N1H7 587 aa4.6□□□□□ -1.67
CCDC88A-209ENST00000456975 ZNF561Q8N587 486 aa4.6□□□□□ -1.67
CCDC88A-209ENST00000456975 DDX51Q8N8A6 666 aaKnown RBP eCLIP4.6□□□□□ -1.67
CCDC88A-209ENST00000456975 ACBD4Q8NC06 268 aa4.6□□□□□ -1.67
CCDC88A-209ENST00000456975 OR10H4Q8NGA5 316 aa4.6□□□□□ -1.67
CCDC88A-209ENST00000456975 OR2L8Q8NGY9 312 aa4.6□□□□□ -1.67
CCDC88A-209ENST00000456975 TAS1R2Q8TE23 839 aa4.6□□□□□ -1.67
CCDC88A-209ENST00000456975 HSD17B8Q92506 261 aa4.6□□□□□ -1.67
CCDC88A-209ENST00000456975 ESR2Q92731 530 aa4.6□□□□□ -1.67
CCDC88A-209ENST00000456975 SPSB4Q96A44 273 aa4.6□□□□□ -1.67
CCDC88A-209ENST00000456975 ERLEC1Q96DZ1 483 aa4.6□□□□□ -1.67
CCDC88A-209ENST00000456975 FBXO17Q96EF6 278 aa4.6□□□□□ -1.67
CCDC88A-209ENST00000456975 BSCL2Q96G97 398 aaPredicted RBP4.6□□□□□ -1.67
CCDC88A-209ENST00000456975 PANX1Q96RD7 426 aa4.6□□□□□ -1.67
CCDC88A-209ENST00000456975 TMEM246Q9BRR3 403 aa4.6□□□□□ -1.67
CCDC88A-209ENST00000456975 C11orf84Q9BUA3 381 aaPredicted RBP4.6□□□□□ -1.67
CCDC88A-209ENST00000456975 DPH1Q9BZG8 443 aa4.6□□□□□ -1.67
CCDC88A-209ENST00000456975 DEFB129Q9H1M3 183 aa4.6□□□□□ -1.67
CCDC88A-209ENST00000456975 FOXP1Q9H334 677 aaPredicted RBP4.6□□□□□ -1.67
CCDC88A-209ENST00000456975 LRRN3Q9H3W5 708 aa4.6□□□□□ -1.67
CCDC88A-209ENST00000456975 DPEP2Q9H4A9 486 aa4.6□□□□□ -1.67
CCDC88A-209ENST00000456975 SLA2Q9H6Q3 261 aa4.6□□□□□ -1.67
CCDC88A-209ENST00000456975 MANSC1Q9H8J5 431 aa4.6□□□□□ -1.67
CCDC88A-209ENST00000456975 CARS2Q9HA77 564 aaKnown RBP4.6□□□□□ -1.67
CCDC88A-209ENST00000456975 MLXIPLQ9NP71 852 aa4.6□□□□□ -1.67
CCDC88A-209ENST00000456975 MMP25Q9NPA2 562 aa4.6□□□□□ -1.67
CCDC88A-209ENST00000456975 ADAP2Q9NPF8 381 aa4.6□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms