RNA–Protein interactions for RNA: ENST00000455596.5

HMGB3-205, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene HMGB3, Length 793 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-205ENST00000455596 IKBKGQ9Y6K9 419 aa19.9■□□□□ 0.78
HMGB3-205ENST00000455596 SETXQ7Z333 2677 aaKnown RBP19.9■□□□□ 0.78
HMGB3-205ENST00000455596 E2F3O00716 465 aa19.89■□□□□ 0.77
HMGB3-205ENST00000455596 CLDN4O14493 209 aa19.89■□□□□ 0.77
HMGB3-205ENST00000455596 GFAPP14136 432 aa19.89■□□□□ 0.77
HMGB3-205ENST00000455596 EPB42P16452 691 aa19.89■□□□□ 0.77
HMGB3-205ENST00000455596 ECHS1P30084 290 aa19.89■□□□□ 0.77
HMGB3-205ENST00000455596 PCDH1Q08174 1060 aa19.89■□□□□ 0.77
HMGB3-205ENST00000455596 NAA30Q147X3 362 aaPredicted RBP19.89■□□□□ 0.77
HMGB3-205ENST00000455596 SETDB1Q15047 1291 aa19.89■□□□□ 0.77
HMGB3-205ENST00000455596 MED27Q6P2C8 311 aa19.89■□□□□ 0.77
HMGB3-205ENST00000455596 TAOK1Q7L7X3 1001 aa19.89■□□□□ 0.77
HMGB3-205ENST00000455596 LGI4Q8N135 537 aa19.89■□□□□ 0.77
HMGB3-205ENST00000455596 SRFBP1Q8NEF9 429 aaKnown RBP19.89■□□□□ 0.77
HMGB3-205ENST00000455596 F2RL3Q96RI0 385 aa19.89■□□□□ 0.77
HMGB3-205ENST00000455596 VPS11Q9H270 941 aa19.89■□□□□ 0.77
HMGB3-205ENST00000455596 PRTFDC1Q9NRG1 225 aa19.89■□□□□ 0.77
HMGB3-205ENST00000455596 PTPN13Q12923 2485 aa19.88■□□□□ 0.77
HMGB3-205ENST00000455596 HIVEP3Q5T1R4 2406 aa19.88■□□□□ 0.77
HMGB3-205ENST00000455596 RASAL1O95294 804 aa19.88■□□□□ 0.77
HMGB3-205ENST00000455596 PCNAP12004 261 aa19.88■□□□□ 0.77
HMGB3-205ENST00000455596 GP1BBP13224 206 aa19.88■□□□□ 0.77
HMGB3-205ENST00000455596 CERS1P27544 350 aa19.88■□□□□ 0.77
HMGB3-205ENST00000455596 SERPINB1P30740 379 aa19.88■□□□□ 0.77
HMGB3-205ENST00000455596 SERPINB9P50453 376 aa19.88■□□□□ 0.77
HMGB3-205ENST00000455596 ALDH18A1P54886 795 aaKnown RBP19.88■□□□□ 0.77
HMGB3-205ENST00000455596 HSD17B7P56937 341 aa19.88■□□□□ 0.77
HMGB3-205ENST00000455596 RCN2Q14257 317 aa19.88■□□□□ 0.77
HMGB3-205ENST00000455596 PFKFB4Q16877 469 aa19.88■□□□□ 0.77
HMGB3-205ENST00000455596 LAS2Q8IYD9 372 aa19.88■□□□□ 0.77
HMGB3-205ENST00000455596 TEX9Q8N6V9 391 aa19.88■□□□□ 0.77
HMGB3-205ENST00000455596 CEP112Q8N8E3 955 aa19.88■□□□□ 0.77
HMGB3-205ENST00000455596 FAM47BQ8NA70 645 aa19.88■□□□□ 0.77
HMGB3-205ENST00000455596 ZNF473Q8WTR7 871 aaKnown RBP19.88■□□□□ 0.77
HMGB3-205ENST00000455596 KCNC2Q96PR1 638 aa19.88■□□□□ 0.77
HMGB3-205ENST00000455596 TAAR6Q96RI8 345 aa19.88■□□□□ 0.77
HMGB3-205ENST00000455596 PAFAH2Q99487 392 aa19.88■□□□□ 0.77
HMGB3-205ENST00000455596 NPAS2Q99743 824 aa19.88■□□□□ 0.77
HMGB3-205ENST00000455596 SLX1AQ9BQ83 275 aa19.88■□□□□ 0.77
HMGB3-205ENST00000455596 UTP23Q9BRU9 249 aaKnown RBP19.88■□□□□ 0.77
HMGB3-205ENST00000455596 MS4A8Q9BY19 250 aa19.88■□□□□ 0.77
HMGB3-205ENST00000455596 ROGDIQ9GZN7 287 aa19.88■□□□□ 0.77
HMGB3-205ENST00000455596 CDCP1Q9H5V8 836 aa19.88■□□□□ 0.77
HMGB3-205ENST00000455596 PRDM7Q9NQW5 492 aa19.88■□□□□ 0.77
HMGB3-205ENST00000455596 DAPP1Q9UN19 280 aa19.88■□□□□ 0.77
HMGB3-205ENST00000455596 SLC5A6Q9Y289 635 aa19.88■□□□□ 0.77
HMGB3-205ENST00000455596 SVILO95425 2214 aa19.88■□□□□ 0.77
HMGB3-205ENST00000455596 A8MUA0 341 aa19.87■□□□□ 0.77
HMGB3-205ENST00000455596 KLK8O60259 260 aa19.87■□□□□ 0.77
HMGB3-205ENST00000455596 DDAH2O95865 285 aa19.87■□□□□ 0.77
HMGB3-205ENST00000455596 LIM2P55344 173 aa19.87■□□□□ 0.77
HMGB3-205ENST00000455596 SLC13A2Q13183 592 aa19.87■□□□□ 0.77
HMGB3-205ENST00000455596 TUBA3CQ13748 450 aa19.87■□□□□ 0.77
HMGB3-205ENST00000455596 ZNF766Q5HY98 468 aa19.87■□□□□ 0.77
HMGB3-205ENST00000455596 GRHL2Q6ISB3 625 aa19.87■□□□□ 0.77
HMGB3-205ENST00000455596 TUBA3EQ6PEY2 450 aa19.87■□□□□ 0.77
HMGB3-205ENST00000455596 SCUBE1Q8IWY4 988 aa19.87■□□□□ 0.77
HMGB3-205ENST00000455596 ZNF595Q8IYB9 648 aa19.87■□□□□ 0.77
HMGB3-205ENST00000455596 KIF2BQ8N4N8 673 aa19.87■□□□□ 0.77
HMGB3-205ENST00000455596 GPR78Q96P69 363 aa19.87■□□□□ 0.77
HMGB3-205ENST00000455596 CPSF2Q9P2I0 782 aaKnown RBP19.87■□□□□ 0.77
HMGB3-205ENST00000455596 ADGRE2Q9UHX3 823 aa19.87■□□□□ 0.77
HMGB3-205ENST00000455596 ERRFI1Q9UJM3 462 aaPredicted RBP19.87■□□□□ 0.77
HMGB3-205ENST00000455596 A0A087WUV0 522 aaPredicted RBP19.86■□□□□ 0.77
HMGB3-205ENST00000455596 GABRR3A8MPY1 467 aa19.86■□□□□ 0.77
HMGB3-205ENST00000455596 POC1B-GALNT4F8VUJ3 575 aa19.86■□□□□ 0.77
HMGB3-205ENST00000455596 MAN1A2O60476 641 aa19.86■□□□□ 0.77
HMGB3-205ENST00000455596 KRT38O76015 456 aa19.86■□□□□ 0.77
HMGB3-205ENST00000455596 TGFB1P01137 390 aa19.86■□□□□ 0.77
HMGB3-205ENST00000455596 CRYABP02511 175 aaKnown RBP19.86■□□□□ 0.77
HMGB3-205ENST00000455596 CD96P40200 585 aa19.86■□□□□ 0.77
HMGB3-205ENST00000455596 HNRNPFP52597 415 aaKnown RBP19.86■□□□□ 0.77
HMGB3-205ENST00000455596 PCBP2Q15366 365 aaKnown RBP eCLIP19.86■□□□□ 0.77
HMGB3-205ENST00000455596 TMEM35AQ53FP2 167 aa19.86■□□□□ 0.77
HMGB3-205ENST00000455596 TECRLQ5HYJ1 363 aa19.86■□□□□ 0.77
HMGB3-205ENST00000455596 ZNF324BQ6AW86 544 aaPredicted RBP19.86■□□□□ 0.77
HMGB3-205ENST00000455596 CHSY3Q70JA7 882 aa19.86■□□□□ 0.77
HMGB3-205ENST00000455596 RPS19BP1Q86WX3 136 aaKnown RBP19.86■□□□□ 0.77
HMGB3-205ENST00000455596 MDS2Q8NDY4 140 aa19.86■□□□□ 0.77
HMGB3-205ENST00000455596 TMEM52Q8NDY8 209 aa19.86■□□□□ 0.77
HMGB3-205ENST00000455596 NFAM1Q8NET5 270 aaPredicted RBP19.86■□□□□ 0.77
HMGB3-205ENST00000455596 OR7G3Q8NG95 312 aa19.86■□□□□ 0.77
HMGB3-205ENST00000455596 DNAJB8Q8NHS0 232 aa19.86■□□□□ 0.77
HMGB3-205ENST00000455596 NR4A3Q92570 626 aa19.86■□□□□ 0.77
HMGB3-205ENST00000455596 ISL2Q96A47 359 aa19.86■□□□□ 0.77
HMGB3-205ENST00000455596 TRIM44Q96DX7 344 aaPredicted RBP19.86■□□□□ 0.77
HMGB3-205ENST00000455596 C5orf34Q96MH7 638 aa19.86■□□□□ 0.77
HMGB3-205ENST00000455596 SIGLEC12Q96PQ1 595 aa19.86■□□□□ 0.77
HMGB3-205ENST00000455596 TBCDQ9BTW9 1192 aa19.86■□□□□ 0.77
HMGB3-205ENST00000455596 PNO1Q9NRX1 252 aaKnown RBP19.86■□□□□ 0.77
HMGB3-205ENST00000455596 ANKRD10Q9NXR5 420 aa19.86■□□□□ 0.77
HMGB3-205ENST00000455596 PCDHGB6Q9Y5F9 930 aa19.86■□□□□ 0.77
HMGB3-205ENST00000455596 TNPO3Q9Y5L0 923 aaKnown RBP19.86■□□□□ 0.77
HMGB3-205ENST00000455596 SYNDIG1LA6NDD5 238 aa19.85■□□□□ 0.77
HMGB3-205ENST00000455596 CDK2AP1O14519 115 aa19.85■□□□□ 0.77
HMGB3-205ENST00000455596 CNTFP26441 200 aa19.85■□□□□ 0.77
HMGB3-205ENST00000455596 MAGEA12P43365 314 aa19.85■□□□□ 0.77
HMGB3-205ENST00000455596 OC90Q02509 493 aaPredicted RBP19.85■□□□□ 0.77
HMGB3-205ENST00000455596 TERF2Q15554 542 aa19.85■□□□□ 0.77
HMGB3-205ENST00000455596 OR1C1Q15619 314 aa19.85■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms