RNA–Protein interactions for RNA: ENST00000450066.6

USP39-207, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,086 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-207ENST00000450066 GAL3ST3Q96A11 431 aa13.55□□□□□ -0.24
USP39-207ENST00000450066 CIDECQ96AQ7 238 aaPredicted RBP13.55□□□□□ -0.24
USP39-207ENST00000450066 SLCO4A1Q96BD0 722 aa13.55□□□□□ -0.24
USP39-207ENST00000450066 FAM120BQ96EK7 910 aaKnown RBP13.55□□□□□ -0.24
USP39-207ENST00000450066 KLHL25Q9H0H3 589 aa13.55□□□□□ -0.24
USP39-207ENST00000450066 SEMA6CQ9H3T2 930 aa13.55□□□□□ -0.24
USP39-207ENST00000450066 ZNF282Q9UDV7 671 aaPredicted RBP13.55□□□□□ -0.24
USP39-207ENST00000450066 CSNK1G3Q9Y6M4 447 aa13.55□□□□□ -0.24
USP39-207ENST00000450066 GOLGA4Q13439 2230 aaKnown RBP13.55□□□□□ -0.24
USP39-207ENST00000450066 A0A0J9YVX5 310 aa13.55□□□□□ -0.24
USP39-207ENST00000450066 ELOVL7A1L3X0 281 aa13.55□□□□□ -0.24
USP39-207ENST00000450066 FAM220BPB1ANY3 271 aa13.55□□□□□ -0.24
USP39-207ENST00000450066 GUCY1B2O75343 617 aa13.55□□□□□ -0.24
USP39-207ENST00000450066 GMNNO75496 209 aa13.55□□□□□ -0.24
USP39-207ENST00000450066 SCELO95171 688 aa13.55□□□□□ -0.24
USP39-207ENST00000450066 PVRP15151 417 aa13.55□□□□□ -0.24
USP39-207ENST00000450066 PPIBP23284 216 aaKnown RBP13.55□□□□□ -0.24
USP39-207ENST00000450066 SOX11P35716 441 aa13.55□□□□□ -0.24
USP39-207ENST00000450066 CAPZBP47756 277 aa13.55□□□□□ -0.24
USP39-207ENST00000450066 PPP1CAP62136 330 aa13.55□□□□□ -0.24
USP39-207ENST00000450066 HBA1P69905 142 aa13.55□□□□□ -0.24
USP39-207ENST00000450066 CSTF1Q05048 431 aaKnown RBP13.55□□□□□ -0.24
USP39-207ENST00000450066 SLAMF1Q13291 335 aa13.55□□□□□ -0.24
USP39-207ENST00000450066 C14orf28Q4W4Y0 310 aa13.55□□□□□ -0.24
USP39-207ENST00000450066 MRM1Q6IN84 353 aaKnown RBP13.55□□□□□ -0.24
USP39-207ENST00000450066 KCT2Q8NC54 265 aa13.55□□□□□ -0.24
USP39-207ENST00000450066 CAMKVQ8NCB2 501 aa13.55□□□□□ -0.24
USP39-207ENST00000450066 RERGQ96A58 199 aaPredicted RBP13.55□□□□□ -0.24
USP39-207ENST00000450066 REXO5Q96IC2 774 aaKnown RBP13.55□□□□□ -0.24
USP39-207ENST00000450066 SLC38A3Q99624 504 aa13.55□□□□□ -0.24
USP39-207ENST00000450066 TACO1Q9BSH4 297 aaKnown RBP13.55□□□□□ -0.24
USP39-207ENST00000450066 FAIM2Q9BWQ8 316 aa13.55□□□□□ -0.24
USP39-207ENST00000450066 RPF2Q9H7B2 306 aaKnown RBP13.55□□□□□ -0.24
USP39-207ENST00000450066 GORASP2Q9H8Y8 452 aa13.55□□□□□ -0.24
USP39-207ENST00000450066 TPT1P8Q9HAU6 139 aa13.55□□□□□ -0.24
USP39-207ENST00000450066 CCM2LQ9NUG4 571 aaPredicted RBP13.55□□□□□ -0.24
USP39-207ENST00000450066 ARMC1Q9NVT9 282 aa13.55□□□□□ -0.24
USP39-207ENST00000450066 TEX10Q9NXF1 929 aaPredicted RBP13.55□□□□□ -0.24
USP39-207ENST00000450066 TAS2R7Q9NYW3 318 aa13.55□□□□□ -0.24
USP39-207ENST00000450066 EHD3Q9NZN3 535 aa13.55□□□□□ -0.24
USP39-207ENST00000450066 CORO2BQ9UQ03 480 aa13.55□□□□□ -0.24
USP39-207ENST00000450066 ASB4Q9Y574 426 aa13.55□□□□□ -0.24
USP39-207ENST00000450066 TECTAO75443 2155 aa13.54□□□□□ -0.24
USP39-207ENST00000450066 A0A1W2PRB8 838 aa13.54□□□□□ -0.24
USP39-207ENST00000450066 DHRS12A0PJE2 317 aa13.54□□□□□ -0.24
USP39-207ENST00000450066 URADA6NGE7 173 aa13.54□□□□□ -0.24
USP39-207ENST00000450066 CASQ2O14958 399 aaPredicted RBP13.54□□□□□ -0.24
USP39-207ENST00000450066 C6orf47O95873 294 aa13.54□□□□□ -0.24
USP39-207ENST00000450066 GPIP06744 558 aa13.54□□□□□ -0.24
USP39-207ENST00000450066 ALDH9A1P49189 494 aa13.54□□□□□ -0.24
USP39-207ENST00000450066 RAB8AP61006 207 aa13.54□□□□□ -0.24
USP39-207ENST00000450066 SLC14A1Q13336 389 aa13.54□□□□□ -0.24
USP39-207ENST00000450066 MAP7Q14244 749 aa13.54□□□□□ -0.24
USP39-207ENST00000450066 NDUFAF5Q5TEU4 345 aa13.54□□□□□ -0.24
USP39-207ENST00000450066 GPR155Q7Z3F1 870 aa13.54□□□□□ -0.24
USP39-207ENST00000450066 TMEM126BQ8IUX1 230 aa13.54□□□□□ -0.24
USP39-207ENST00000450066 MICU2Q8IYU8 434 aa13.54□□□□□ -0.24
USP39-207ENST00000450066 C10orf111Q8N326 155 aa13.54□□□□□ -0.24
USP39-207ENST00000450066 TRIML2Q8N7C3 387 aa13.54□□□□□ -0.24
USP39-207ENST00000450066 ZFP90Q8TF47 636 aa13.54□□□□□ -0.24
USP39-207ENST00000450066 CANT1Q8WVQ1 401 aa13.54□□□□□ -0.24
USP39-207ENST00000450066 NSMCE2Q96MF7 247 aa13.54□□□□□ -0.24
USP39-207ENST00000450066 EFHD1Q9BUP0 239 aa13.54□□□□□ -0.24
USP39-207ENST00000450066 ABCG4Q9H172 646 aa13.54□□□□□ -0.24
USP39-207ENST00000450066 TAS2R9Q9NYW1 312 aa13.54□□□□□ -0.24
USP39-207ENST00000450066 SNX11Q9Y5W9 270 aa13.54□□□□□ -0.24
USP39-207ENST00000450066 TCRBV5S2A0A599 114 aa13.54□□□□□ -0.24
USP39-207ENST00000450066 GSTA4O15217 222 aa13.54□□□□□ -0.24
USP39-207ENST00000450066 PROS1P07225 676 aa13.54□□□□□ -0.24
USP39-207ENST00000450066 UMPSP11172 480 aa13.54□□□□□ -0.24
USP39-207ENST00000450066 PSMA4P25789 261 aaKnown RBP13.54□□□□□ -0.24
USP39-207ENST00000450066 RXRGP48443 463 aa13.54□□□□□ -0.24
USP39-207ENST00000450066 ARRB1P49407 418 aaPredicted RBP13.54□□□□□ -0.24
USP39-207ENST00000450066 SRSF5Q13243 272 aaKnown RBP13.54□□□□□ -0.24
USP39-207ENST00000450066 GAB1Q13480 694 aa13.54□□□□□ -0.24
USP39-207ENST00000450066 MTX3Q5HYI7 312 aa13.54□□□□□ -0.24
USP39-207ENST00000450066 MANEAQ5SRI9 462 aa13.54□□□□□ -0.24
USP39-207ENST00000450066 FRMPD2BQ6IN97 320 aa13.54□□□□□ -0.24
USP39-207ENST00000450066 ZNF551Q7Z340 670 aaPredicted RBP13.54□□□□□ -0.24
USP39-207ENST00000450066 OR52E4Q8NGH9 312 aa13.54□□□□□ -0.24
USP39-207ENST00000450066 UTP15Q8TED0 518 aaKnown RBP13.54□□□□□ -0.24
USP39-207ENST00000450066 ELF4Q99607 663 aaPredicted RBP13.54□□□□□ -0.24
USP39-207ENST00000450066 ROGDIQ9GZN7 287 aa13.54□□□□□ -0.24
USP39-207ENST00000450066 COPS7BQ9H9Q2 264 aaPredicted RBP13.54□□□□□ -0.24
USP39-207ENST00000450066 TMEM74BQ9NUR3 256 aa13.54□□□□□ -0.24
USP39-207ENST00000450066 SUSD2Q9UGT4 822 aa13.54□□□□□ -0.24
USP39-207ENST00000450066 RIMS3Q9UJD0 308 aa13.54□□□□□ -0.24
USP39-207ENST00000450066 PILRBQ9UKJ0 227 aa13.54□□□□□ -0.24
USP39-207ENST00000450066 A0A0C4DFX4 3053 aa13.53□□□□□ -0.24
USP39-207ENST00000450066 LOC105369274A0A096LPK9 316 aa13.53□□□□□ -0.24
USP39-207ENST00000450066 LOC102723532A0A0G2JNH3 316 aa13.53□□□□□ -0.24
USP39-207ENST00000450066 H0YGG7 62 aa13.53□□□□□ -0.24
USP39-207ENST00000450066 PDPK1O15530 556 aa13.53□□□□□ -0.24
USP39-207ENST00000450066 ZSCAN9O15535 394 aaPredicted RBP13.53□□□□□ -0.24
USP39-207ENST00000450066 P2RX6O15547 441 aa13.53□□□□□ -0.24
USP39-207ENST00000450066 PRAMEF10O60809 474 aa13.53□□□□□ -0.24
USP39-207ENST00000450066 ABCB1P08183 1280 aaPredicted RBP13.53□□□□□ -0.24
USP39-207ENST00000450066 ZNF888P0CJ79 500 aaPredicted RBP13.53□□□□□ -0.24
USP39-207ENST00000450066 SMIM10L1P0DMW3 83 aa13.53□□□□□ -0.24
USP39-207ENST00000450066 CERS1P27544 350 aa13.53□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms