RNA–Protein interactions for RNA: ENST00000430158.5

USP40-205, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 1,047 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-205ENST00000430158 SPTA1P02549 2419 aa11.74□□□□□ -0.53
USP40-205ENST00000430158 IGSF10Q6WRI0 2623 aa11.73□□□□□ -0.53
USP40-205ENST00000430158 TMEM114B3SHH9 223 aa11.73□□□□□ -0.53
USP40-205ENST00000430158 C9J4A7 227 aa11.73□□□□□ -0.53
USP40-205ENST00000430158 NPIPB8E9PQR5 432 aa11.73□□□□□ -0.53
USP40-205ENST00000430158 K7ENP7 123 aa11.73□□□□□ -0.53
USP40-205ENST00000430158 SAP18O00422 153 aaKnown RBP11.73□□□□□ -0.53
USP40-205ENST00000430158 AZIN1O14977 448 aa11.73□□□□□ -0.53
USP40-205ENST00000430158 NKX2-8O15522 239 aa11.73□□□□□ -0.53
USP40-205ENST00000430158 SNNO75324 88 aaPredicted RBP11.73□□□□□ -0.53
USP40-205ENST00000430158 ULK1O75385 1050 aa11.73□□□□□ -0.53
USP40-205ENST00000430158 EEDO75530 441 aaKnown RBP11.73□□□□□ -0.53
USP40-205ENST00000430158 JRKO75564 520 aa11.73□□□□□ -0.53
USP40-205ENST00000430158 KRT6AP02538 564 aa11.73□□□□□ -0.53
USP40-205ENST00000430158 KRT6BP04259 564 aa11.73□□□□□ -0.53
USP40-205ENST00000430158 ZGLP1P0C6A0 271 aa11.73□□□□□ -0.53
USP40-205ENST00000430158 UROSP10746 265 aa11.73□□□□□ -0.53
USP40-205ENST00000430158 HSD3B1P14060 373 aa11.73□□□□□ -0.53
USP40-205ENST00000430158 HSD3B2P26439 372 aa11.73□□□□□ -0.53
USP40-205ENST00000430158 KRT6CP48668 564 aa11.73□□□□□ -0.53
USP40-205ENST00000430158 OLR1P78380 273 aa11.73□□□□□ -0.53
USP40-205ENST00000430158 IFT88Q13099 833 aa11.73□□□□□ -0.53
USP40-205ENST00000430158 SGO1Q5FBB7 561 aa11.73□□□□□ -0.53
USP40-205ENST00000430158 ARHGAP40Q5TG30 622 aa11.73□□□□□ -0.53
USP40-205ENST00000430158 HHATQ5VTY9 493 aa11.73□□□□□ -0.53
USP40-205ENST00000430158 CLEC6AQ6EIG7 209 aa11.73□□□□□ -0.53
USP40-205ENST00000430158 MRM1Q6IN84 353 aaKnown RBP11.73□□□□□ -0.53
USP40-205ENST00000430158 NIPAL1Q6NVV3 410 aa11.73□□□□□ -0.53
USP40-205ENST00000430158 INO80CQ6PI98 192 aaPredicted RBP11.73□□□□□ -0.53
USP40-205ENST00000430158 METTL4Q8N3J2 472 aa11.73□□□□□ -0.53
USP40-205ENST00000430158 ACOT4Q8N9L9 421 aa11.73□□□□□ -0.53
USP40-205ENST00000430158 SRFBP1Q8NEF9 429 aaKnown RBP11.73□□□□□ -0.53
USP40-205ENST00000430158 NBEAQ8NFP9 2946 aa11.73□□□□□ -0.53
USP40-205ENST00000430158 OR51Q1Q8NH59 317 aa11.73□□□□□ -0.53
USP40-205ENST00000430158 SELENOMQ8WWX9 145 aa11.73□□□□□ -0.53
USP40-205ENST00000430158 KIAA1143Q96AT1 154 aaPredicted RBP11.73□□□□□ -0.53
USP40-205ENST00000430158 RGMAQ96B86 450 aa11.73□□□□□ -0.53
USP40-205ENST00000430158 KCNC2Q96PR1 638 aa11.73□□□□□ -0.53
USP40-205ENST00000430158 SERINC2Q96SA4 455 aa11.73□□□□□ -0.53
USP40-205ENST00000430158 HBEGFQ99075 208 aa11.73□□□□□ -0.53
USP40-205ENST00000430158 SERPINI1Q99574 410 aa11.73□□□□□ -0.53
USP40-205ENST00000430158 MESP1Q9BRJ9 268 aa11.73□□□□□ -0.53
USP40-205ENST00000430158 EFHD1Q9BUP0 239 aa11.73□□□□□ -0.53
USP40-205ENST00000430158 NPLQ9BXD5 320 aaPredicted RBP11.73□□□□□ -0.53
USP40-205ENST00000430158 ELOVL6Q9H5J4 265 aa11.73□□□□□ -0.53
USP40-205ENST00000430158 CPNE5Q9HCH3 593 aa11.73□□□□□ -0.53
USP40-205ENST00000430158 HCN3Q9P1Z3 774 aa11.73□□□□□ -0.53
USP40-205ENST00000430158 TRPC4Q9UBN4 977 aa11.73□□□□□ -0.53
USP40-205ENST00000430158 ZNF282Q9UDV7 671 aaPredicted RBP11.73□□□□□ -0.53
USP40-205ENST00000430158 ZDHHC2Q9UIJ5 367 aa11.73□□□□□ -0.53
USP40-205ENST00000430158 CLDN16Q9Y5I7 305 aa11.73□□□□□ -0.53
USP40-205ENST00000430158 DNAJC15Q9Y5T4 150 aa11.73□□□□□ -0.53
USP40-205ENST00000430158 ATMQ13315 3056 aa11.73□□□□□ -0.53
USP40-205ENST00000430158 A0A0A6YYD5 115 aa11.72□□□□□ -0.53
USP40-205ENST00000430158 TMEM233B4DJY2 109 aa11.72□□□□□ -0.53
USP40-205ENST00000430158 CYR61O00622 381 aa11.72□□□□□ -0.53
USP40-205ENST00000430158 TMPRSS11DO60235 418 aa11.72□□□□□ -0.53
USP40-205ENST00000430158 HIST1H1TP22492 207 aaPredicted RBP11.72□□□□□ -0.53
USP40-205ENST00000430158 GRK2P25098 689 aa11.72□□□□□ -0.53
USP40-205ENST00000430158 CERS1P27544 350 aa11.72□□□□□ -0.53
USP40-205ENST00000430158 HPDP32754 393 aaPredicted RBP11.72□□□□□ -0.53
USP40-205ENST00000430158 ARL1P40616 181 aaPredicted RBP11.72□□□□□ -0.53
USP40-205ENST00000430158 TSFMP43897 325 aaKnown RBP11.72□□□□□ -0.53
USP40-205ENST00000430158 MTTPP55157 894 aa11.72□□□□□ -0.53
USP40-205ENST00000430158 ABCE1P61221 599 aaKnown RBP11.72□□□□□ -0.53
USP40-205ENST00000430158 RPS15P62841 145 aaKnown RBP11.72□□□□□ -0.53
USP40-205ENST00000430158 KLC1Q07866 573 aa11.72□□□□□ -0.53
USP40-205ENST00000430158 BST1Q10588 318 aa11.72□□□□□ -0.53
USP40-205ENST00000430158 CSTF3Q12996 717 aaKnown RBP11.72□□□□□ -0.53
USP40-205ENST00000430158 ST3GAL2Q16842 350 aa11.72□□□□□ -0.53
USP40-205ENST00000430158 UGT8Q16880 541 aa11.72□□□□□ -0.53
USP40-205ENST00000430158 ATP1A1-AS1Q5TC04 95 aa11.72□□□□□ -0.53
USP40-205ENST00000430158 TTC19Q6DKK2 380 aaPredicted RBP11.72□□□□□ -0.53
USP40-205ENST00000430158 OR4C11Q6IEV9 310 aa11.72□□□□□ -0.53
USP40-205ENST00000430158 TRIM40Q6P9F5 258 aa11.72□□□□□ -0.53
USP40-205ENST00000430158 SCIMPQ6UWF3 145 aa11.72□□□□□ -0.53
USP40-205ENST00000430158 LRRC69Q6ZNQ3 347 aa11.72□□□□□ -0.53
USP40-205ENST00000430158 Q6ZSR9 355 aa11.72□□□□□ -0.53
USP40-205ENST00000430158 PPP1R32Q7Z5V6 425 aa11.72□□□□□ -0.53
USP40-205ENST00000430158 CLYBLQ8N0X4 340 aa11.72□□□□□ -0.53
USP40-205ENST00000430158 ZCCHC7Q8N3Z6 543 aaKnown RBP11.72□□□□□ -0.53
USP40-205ENST00000430158 GBP7Q8N8V2 638 aaPredicted RBP11.72□□□□□ -0.53
USP40-205ENST00000430158 MGARPQ8TDB4 240 aa11.72□□□□□ -0.53
USP40-205ENST00000430158 CHTF18Q8WVB6 975 aa11.72□□□□□ -0.53
USP40-205ENST00000430158 STARD8Q92502 1023 aa11.72□□□□□ -0.53
USP40-205ENST00000430158 CRELD1Q96HD1 420 aa11.72□□□□□ -0.53
USP40-205ENST00000430158 PRORYQ9H606 182 aa11.72□□□□□ -0.53
USP40-205ENST00000430158 LYRM4Q9HD34 91 aa11.72□□□□□ -0.53
USP40-205ENST00000430158 C14orf105Q9NVL8 296 aa11.72□□□□□ -0.53
USP40-205ENST00000430158 SIRT5Q9NXA8 310 aa11.72□□□□□ -0.53
USP40-205ENST00000430158 NKIRAS1Q9NYS0 192 aa11.72□□□□□ -0.53
USP40-205ENST00000430158 NXT1Q9UKK6 140 aaKnown RBP11.72□□□□□ -0.53
USP40-205ENST00000430158 DAPP1Q9UN19 280 aa11.72□□□□□ -0.53
USP40-205ENST00000430158 EPB41L3Q9Y2J2 1087 aaPredicted RBP11.72□□□□□ -0.53
USP40-205ENST00000430158 PTRH2Q9Y3E5 179 aaKnown RBP11.72□□□□□ -0.53
USP40-205ENST00000430158 TRAF6Q9Y4K3 522 aa11.72□□□□□ -0.53
USP40-205ENST00000430158 ASB4Q9Y574 426 aa11.72□□□□□ -0.53
USP40-205ENST00000430158 PTGDR2Q9Y5Y4 395 aa11.72□□□□□ -0.53
USP40-205ENST00000430158 A0A1W2PQ72 361 aa11.71□□□□□ -0.53
USP40-205ENST00000430158 OR2W5A6NFC9 320 aa11.71□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms