RNA–Protein interactions for RNA: ENST00000418457.6

VPS41-206, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 532 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-206ENST00000418457 MAGEA4P43358 317 aa2.5□□□□□ -2.01
VPS41-206ENST00000418457 CRKLP46109 303 aaKnown RBP2.5□□□□□ -2.01
VPS41-206ENST00000418457 HOXA1P49639 335 aaPredicted RBP2.5□□□□□ -2.01
VPS41-206ENST00000418457 CASP4P49662 377 aa2.5□□□□□ -2.01
VPS41-206ENST00000418457 SERPINB8P50452 374 aa2.5□□□□□ -2.01
VPS41-206ENST00000418457 ARSEP51690 589 aa2.5□□□□□ -2.01
VPS41-206ENST00000418457 STAT2P52630 851 aa2.5□□□□□ -2.01
VPS41-206ENST00000418457 RPL24P83731 157 aaKnown RBP2.5□□□□□ -2.01
VPS41-206ENST00000418457 CDK16Q00536 496 aa2.5□□□□□ -2.01
VPS41-206ENST00000418457 ARL16Q0P5N6 197 aa2.5□□□□□ -2.01
VPS41-206ENST00000418457 ASPHQ12797 758 aa2.5□□□□□ -2.01
VPS41-206ENST00000418457 GAGE5Q13069 117 aa2.5□□□□□ -2.01
VPS41-206ENST00000418457 GAGE6Q13070 117 aa2.5□□□□□ -2.01
VPS41-206ENST00000418457 DNAJC3Q13217 504 aa2.5□□□□□ -2.01
VPS41-206ENST00000418457 TMED1Q13445 227 aa2.5□□□□□ -2.01
VPS41-206ENST00000418457 MED21Q13503 144 aa2.5□□□□□ -2.01
VPS41-206ENST00000418457 HNRNPDQ14103 355 aaKnown RBP2.5□□□□□ -2.01
VPS41-206ENST00000418457 KIR2DS5Q14953 304 aa2.5□□□□□ -2.01
VPS41-206ENST00000418457 CBWD6Q4V339 395 aa2.5□□□□□ -2.01
VPS41-206ENST00000418457 LIN52Q52LA3 116 aa2.5□□□□□ -2.01
VPS41-206ENST00000418457 EPC2Q52LR7 807 aa2.5□□□□□ -2.01
VPS41-206ENST00000418457 CBWD3Q5JTY5 395 aa2.5□□□□□ -2.01
VPS41-206ENST00000418457 LGSNQ5TDP6 509 aa2.5□□□□□ -2.01
VPS41-206ENST00000418457 LIN9Q5TKA1 542 aa2.5□□□□□ -2.01
VPS41-206ENST00000418457 LRRC38Q5VT99 294 aa2.5□□□□□ -2.01
VPS41-206ENST00000418457 DHRS7BQ6IAN0 325 aaPredicted RBP2.5□□□□□ -2.01
VPS41-206ENST00000418457 FAM109BQ6ICB4 259 aaPredicted RBP2.5□□□□□ -2.01
VPS41-206ENST00000418457 KRTAP5-3Q6L8H2 238 aa2.5□□□□□ -2.01
VPS41-206ENST00000418457 KLC3Q6P597 504 aa2.5□□□□□ -2.01
VPS41-206ENST00000418457 ZNF449Q6P9G9 518 aa2.5□□□□□ -2.01
VPS41-206ENST00000418457 PLXDC2Q6UX71 529 aa2.5□□□□□ -2.01
VPS41-206ENST00000418457 PACS1Q6VY07 963 aa2.5□□□□□ -2.01
VPS41-206ENST00000418457 ZNF852Q6ZMS4 543 aa2.5□□□□□ -2.01
VPS41-206ENST00000418457 FAM47EQ6ZV65 393 aa2.5□□□□□ -2.01
VPS41-206ENST00000418457 MARK2Q7KZI7 788 aaKnown RBP2.5□□□□□ -2.01
VPS41-206ENST00000418457 OTUD6AQ7L8S5 288 aa2.5□□□□□ -2.01
VPS41-206ENST00000418457 BHLHA9Q7RTU4 235 aa2.5□□□□□ -2.01
VPS41-206ENST00000418457 OTOAQ7RTW8 1153 aa2.5□□□□□ -2.01
VPS41-206ENST00000418457 ZNF720Q7Z2F6 126 aa2.5□□□□□ -2.01
VPS41-206ENST00000418457 LDB1Q86U70 411 aaPredicted RBP2.5□□□□□ -2.01
VPS41-206ENST00000418457 TMEM126BQ8IUX1 230 aa2.5□□□□□ -2.01
VPS41-206ENST00000418457 LINC00346Q8IVM7 164 aa2.5□□□□□ -2.01
VPS41-206ENST00000418457 FAM71AQ8IYT1 594 aa2.5□□□□□ -2.01
VPS41-206ENST00000418457 KATNAL2Q8IYT4 538 aa2.5□□□□□ -2.01
VPS41-206ENST00000418457 RBM15BQ8NDT2 890 aaKnown RBP2.5□□□□□ -2.01
VPS41-206ENST00000418457 CATSPER1Q8NEC5 780 aa2.5□□□□□ -2.01
VPS41-206ENST00000418457 APPL2Q8NEU8 664 aa2.5□□□□□ -2.01
VPS41-206ENST00000418457 EXD1Q8NHP7 514 aa2.5□□□□□ -2.01
VPS41-206ENST00000418457 CRYGNQ8WXF5 182 aa2.5□□□□□ -2.01
VPS41-206ENST00000418457 SMPDL3BQ92485 455 aa2.5□□□□□ -2.01
VPS41-206ENST00000418457 SHC3Q92529 594 aa2.5□□□□□ -2.01
VPS41-206ENST00000418457 ZNF75CPQ92670 426 aaPredicted RBP2.5□□□□□ -2.01
VPS41-206ENST00000418457 KRT35Q92764 455 aa2.5□□□□□ -2.01
VPS41-206ENST00000418457 SEMA4DQ92854 862 aa2.5□□□□□ -2.01
VPS41-206ENST00000418457 ZNF653Q96CK0 615 aa2.5□□□□□ -2.01
VPS41-206ENST00000418457 DYNLL2Q96FJ2 89 aa2.5□□□□□ -2.01
VPS41-206ENST00000418457 BTBD9Q96Q07 612 aa2.5□□□□□ -2.01
VPS41-206ENST00000418457 ACCSQ96QU6 501 aa2.5□□□□□ -2.01
VPS41-206ENST00000418457 NDNQ99608 321 aa2.5□□□□□ -2.01
VPS41-206ENST00000418457 ECSITQ9BQ95 431 aa2.5□□□□□ -2.01
VPS41-206ENST00000418457 SYT15Q9BQS2 421 aa2.5□□□□□ -2.01
VPS41-206ENST00000418457 NUP85Q9BW27 656 aa2.5□□□□□ -2.01
VPS41-206ENST00000418457 MRPL1Q9BYD6 325 aaKnown RBP2.5□□□□□ -2.01
VPS41-206ENST00000418457 FGFBP2Q9BYJ0 223 aa2.5□□□□□ -2.01
VPS41-206ENST00000418457 KRTAP1-5Q9BYS1 174 aa2.5□□□□□ -2.01
VPS41-206ENST00000418457 WWP1Q9H0M0 922 aa2.5□□□□□ -2.01
VPS41-206ENST00000418457 KCNK15Q9H427 330 aa2.5□□□□□ -2.01
VPS41-206ENST00000418457 ST6GALNAC4Q9H4F1 302 aa2.5□□□□□ -2.01
VPS41-206ENST00000418457 VAT1LQ9HCJ6 419 aa2.5□□□□□ -2.01
VPS41-206ENST00000418457 UBE2TQ9NPD8 197 aaPredicted RBP2.5□□□□□ -2.01
VPS41-206ENST00000418457 TCF7L2Q9NQB0 619 aa2.5□□□□□ -2.01
VPS41-206ENST00000418457 NDE1Q9NXR1 346 aa2.5□□□□□ -2.01
VPS41-206ENST00000418457 PTTG2Q9NZH5 202 aa2.5□□□□□ -2.01
VPS41-206ENST00000418457 BCAP29Q9UHQ4 241 aa2.5□□□□□ -2.01
VPS41-206ENST00000418457 EXOC7Q9UPT5 735 aa2.5□□□□□ -2.01
VPS41-206ENST00000418457 NOTCH4Q99466 2003 aa2.5□□□□□ -2.01
VPS41-206ENST00000418457 LRRC37AA6NMS7 1700 aa2.5□□□□□ -2.01
VPS41-206ENST00000418457 THSD7AQ9UPZ6 1657 aa2.5□□□□□ -2.01
VPS41-206ENST00000418457 GOLGB1Q14789 3259 aaKnown RBP2.5□□□□□ -2.01
VPS41-206ENST00000418457 SMCHD1A6NHR9 2005 aa2.49□□□□□ -2.01
VPS41-206ENST00000418457 CNTNAP2Q9UHC6 1331 aa2.49□□□□□ -2.01
VPS41-206ENST00000418457 FAM172BPA6NC97 362 aa2.49□□□□□ -2.01
VPS41-206ENST00000418457 GLOD5A6NK44 160 aa2.49□□□□□ -2.01
VPS41-206ENST00000418457 A6NL46 340 aa2.49□□□□□ -2.01
VPS41-206ENST00000418457 TMEM110-MUSTN1A8MSY1 372 aa2.49□□□□□ -2.01
VPS41-206ENST00000418457 MAGEB17A8MXT2 336 aa2.49□□□□□ -2.01
VPS41-206ENST00000418457 ANKRD63C9JTQ0 380 aa2.49□□□□□ -2.01
VPS41-206ENST00000418457 F5H6K3 240 aa2.49□□□□□ -2.01
VPS41-206ENST00000418457 SPECC1L-ADORA2AF8WAN1 911 aa2.49□□□□□ -2.01
VPS41-206ENST00000418457 H0YCG3 227 aa2.49□□□□□ -2.01
VPS41-206ENST00000418457 I3L4J1 428 aa2.49□□□□□ -2.01
VPS41-206ENST00000418457 BMPR1BO00238 502 aa2.49□□□□□ -2.01
VPS41-206ENST00000418457 ADAMDEC1O15204 470 aa2.49□□□□□ -2.01
VPS41-206ENST00000418457 CLIC2O15247 247 aa2.49□□□□□ -2.01
VPS41-206ENST00000418457 ALOX15BO15296 676 aa2.49□□□□□ -2.01
VPS41-206ENST00000418457 BIRC5O15392 142 aa2.49□□□□□ -2.01
VPS41-206ENST00000418457 MSH4O15457 936 aa2.49□□□□□ -2.01
VPS41-206ENST00000418457 CLDN3O15551 220 aa2.49□□□□□ -2.01
VPS41-206ENST00000418457 FGF17O60258 216 aa2.49□□□□□ -2.01
VPS41-206ENST00000418457 FAM189A1O60320 539 aa2.49□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms