RNA–Protein interactions for RNA: ENST00000417088.2

RPS28-201, Transcript of ribosomal protein S28, humanhuman

TSL 2

Gene RPS28, Length 334 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPS28-201ENST00000417088 WDR47O94967 919 aa13.8□□□□□ -0.2
RPS28-201ENST00000417088 GNAZP19086 355 aa13.8□□□□□ -0.2
RPS28-201ENST00000417088 TFEBP19484 476 aa13.8□□□□□ -0.2
RPS28-201ENST00000417088 SLC6A12P48065 614 aa13.8□□□□□ -0.2
RPS28-201ENST00000417088 HSD17B7P56937 341 aa13.8□□□□□ -0.2
RPS28-201ENST00000417088 RAB38P57729 211 aa13.8□□□□□ -0.2
RPS28-201ENST00000417088 GPR85P60893 370 aa13.8□□□□□ -0.2
RPS28-201ENST00000417088 MGAT5Q09328 741 aa13.8□□□□□ -0.2
RPS28-201ENST00000417088 SLBPQ14493 270 aaKnown RBP eCLIP13.8□□□□□ -0.2
RPS28-201ENST00000417088 TSNQ15631 228 aaKnown RBP13.8□□□□□ -0.2
RPS28-201ENST00000417088 TMIGD1Q6UXZ0 262 aa13.8□□□□□ -0.2
RPS28-201ENST00000417088 C16orf47Q6ZP98 133 aaPredicted RBP13.8□□□□□ -0.2
RPS28-201ENST00000417088 CD163Q86VB7 1156 aa13.8□□□□□ -0.2
RPS28-201ENST00000417088 ANKMY2Q8IV38 441 aa13.8□□□□□ -0.2
RPS28-201ENST00000417088 TTLQ8NG68 377 aa13.8□□□□□ -0.2
RPS28-201ENST00000417088 NCLNQ969V3 563 aa13.8□□□□□ -0.2
RPS28-201ENST00000417088 RHBDF1Q96CC6 855 aa13.8□□□□□ -0.2
RPS28-201ENST00000417088 VMP1Q96GC9 406 aa13.8□□□□□ -0.2
RPS28-201ENST00000417088 TREX2Q9BQ50 279 aaPredicted RBP13.8□□□□□ -0.2
RPS28-201ENST00000417088 PRTFDC1Q9NRG1 225 aa13.8□□□□□ -0.2
RPS28-201ENST00000417088 PLSCR2Q9NRY7 297 aa13.8□□□□□ -0.2
RPS28-201ENST00000417088 MOCS1Q9NZB8 636 aa13.8□□□□□ -0.2
RPS28-201ENST00000417088 COQ3Q9NZJ6 369 aa13.8□□□□□ -0.2
RPS28-201ENST00000417088 CTNNAL1Q9UBT7 734 aa13.8□□□□□ -0.2
RPS28-201ENST00000417088 YARS2Q9Y2Z4 477 aaKnown RBP13.8□□□□□ -0.2
RPS28-201ENST00000417088 TMEM200CA6NKL6 621 aa13.79□□□□□ -0.2
RPS28-201ENST00000417088 CLDN4O14493 209 aa13.79□□□□□ -0.2
RPS28-201ENST00000417088 ERI3O43414 337 aaKnown RBP13.79□□□□□ -0.2
RPS28-201ENST00000417088 CDC40O60508 579 aaKnown RBP eCLIP13.79□□□□□ -0.2
RPS28-201ENST00000417088 ZFAND5O76080 213 aa13.79□□□□□ -0.2
RPS28-201ENST00000417088 PDE9AO76083 593 aa13.79□□□□□ -0.2
RPS28-201ENST00000417088 TBX6O95947 436 aaPredicted RBP13.79□□□□□ -0.2
RPS28-201ENST00000417088 CAPN3P20807 821 aa13.79□□□□□ -0.2
RPS28-201ENST00000417088 SSR4P51571 173 aa13.79□□□□□ -0.2
RPS28-201ENST00000417088 NR0B1P51843 470 aaKnown RBP13.79□□□□□ -0.2
RPS28-201ENST00000417088 ARL4CP56559 192 aa13.79□□□□□ -0.2
RPS28-201ENST00000417088 TLE4Q04727 773 aa13.79□□□□□ -0.2
RPS28-201ENST00000417088 SLC13A2Q13183 592 aa13.79□□□□□ -0.2
RPS28-201ENST00000417088 ADPRMQ3LIE5 342 aa13.79□□□□□ -0.2
RPS28-201ENST00000417088 MEX3BQ6ZN04 569 aaKnown RBP13.79□□□□□ -0.2
RPS28-201ENST00000417088 CEP128Q6ZU80 1094 aa13.79□□□□□ -0.2
RPS28-201ENST00000417088 SYDE1Q6ZW31 735 aaPredicted RBP13.79□□□□□ -0.2
RPS28-201ENST00000417088 FRA10AC1Q70Z53 315 aa13.79□□□□□ -0.2
RPS28-201ENST00000417088 ADAMTSL2Q86TH1 951 aa13.79□□□□□ -0.2
RPS28-201ENST00000417088 ZNF595Q8IYB9 648 aa13.79□□□□□ -0.2
RPS28-201ENST00000417088 FAM47BQ8NA70 645 aa13.79□□□□□ -0.2
RPS28-201ENST00000417088 OR52N2Q8NGI0 321 aa13.79□□□□□ -0.2
RPS28-201ENST00000417088 CHTF18Q8WVB6 975 aa13.79□□□□□ -0.2
RPS28-201ENST00000417088 CCT6BQ92526 530 aa13.79□□□□□ -0.2
RPS28-201ENST00000417088 CCDC77Q9BR77 488 aa13.79□□□□□ -0.2
RPS28-201ENST00000417088 NT5DC2Q9H857 520 aa13.79□□□□□ -0.2
RPS28-201ENST00000417088 TIMMDC1Q9NPL8 285 aa13.79□□□□□ -0.2
RPS28-201ENST00000417088 DEPPQ9NTK1 212 aa13.79□□□□□ -0.2
RPS28-201ENST00000417088 KCMF1Q9P0J7 381 aa13.79□□□□□ -0.2
RPS28-201ENST00000417088 ZNF407Q9C0G0 2248 aa13.78□□□□□ -0.2
RPS28-201ENST00000417088 SPG11Q96JI7 2443 aa13.78□□□□□ -0.2
RPS28-201ENST00000417088 TP73O15350 636 aa13.78□□□□□ -0.2
RPS28-201ENST00000417088 TAPBPO15533 448 aa13.78□□□□□ -0.2
RPS28-201ENST00000417088 B3GALT2O43825 422 aa13.78□□□□□ -0.2
RPS28-201ENST00000417088 PRAMEF4O60810 478 aa13.78□□□□□ -0.2
RPS28-201ENST00000417088 CLEC3AO75596 197 aa13.78□□□□□ -0.2
RPS28-201ENST00000417088 TUBB4AP04350 444 aa13.78□□□□□ -0.2
RPS28-201ENST00000417088 TCP1P17987 556 aaKnown RBP13.78□□□□□ -0.2
RPS28-201ENST00000417088 GSTM2P28161 218 aa13.78□□□□□ -0.2
RPS28-201ENST00000417088 PLA2G16P53816 162 aa13.78□□□□□ -0.2
RPS28-201ENST00000417088 FASTKD3Q14CZ7 662 aaKnown RBP13.78□□□□□ -0.2
RPS28-201ENST00000417088 XKR6Q5GH73 641 aa13.78□□□□□ -0.2
RPS28-201ENST00000417088 PRAMEF9Q5VWM5 478 aa13.78□□□□□ -0.2
RPS28-201ENST00000417088 VN1R5Q7Z5H4 357 aa13.78□□□□□ -0.2
RPS28-201ENST00000417088 KLHL7Q8IXQ5 586 aa13.78□□□□□ -0.2
RPS28-201ENST00000417088 KRT78Q8N1N4 520 aa13.78□□□□□ -0.2
RPS28-201ENST00000417088 PSD4Q8NDX1 1056 aa13.78□□□□□ -0.2
RPS28-201ENST00000417088 FBXO36Q8NEA4 188 aa13.78□□□□□ -0.2
RPS28-201ENST00000417088 VPS39Q96JC1 886 aa13.78□□□□□ -0.2
RPS28-201ENST00000417088 SEC16BQ96JE7 1060 aa13.78□□□□□ -0.2
RPS28-201ENST00000417088 CAPZA3Q96KX2 299 aa13.78□□□□□ -0.2
RPS28-201ENST00000417088 TMEM79Q9BSE2 394 aa13.78□□□□□ -0.2
RPS28-201ENST00000417088 MCMBPQ9BTE3 642 aa13.78□□□□□ -0.2
RPS28-201ENST00000417088 DEFB127Q9H1M4 99 aa13.78□□□□□ -0.2
RPS28-201ENST00000417088 LIN28AQ9H9Z2 209 aaKnown RBP13.78□□□□□ -0.2
RPS28-201ENST00000417088 POPDC3Q9HBV1 291 aa13.78□□□□□ -0.2
RPS28-201ENST00000417088 MCCC2Q9HCC0 563 aa13.78□□□□□ -0.2
RPS28-201ENST00000417088 ADAP2Q9NPF8 381 aa13.78□□□□□ -0.2
RPS28-201ENST00000417088 A0A088AWK7 358 aa13.77□□□□□ -0.21
RPS28-201ENST00000417088 PINLYPA6NC86 204 aa13.77□□□□□ -0.21
RPS28-201ENST00000417088 ANKDD1BA6NHY2 528 aa13.77□□□□□ -0.21
RPS28-201ENST00000417088 NCF1BA6NI72 391 aaPredicted RBP13.77□□□□□ -0.21
RPS28-201ENST00000417088 A8MVJ9 347 aa13.77□□□□□ -0.21
RPS28-201ENST00000417088 NCF1CA8MVU1 366 aaPredicted RBP13.77□□□□□ -0.21
RPS28-201ENST00000417088 CYR61O00622 381 aa13.77□□□□□ -0.21
RPS28-201ENST00000417088 ZSCAN12O43309 604 aa13.77□□□□□ -0.21
RPS28-201ENST00000417088 OR2J2O76002 312 aa13.77□□□□□ -0.21
RPS28-201ENST00000417088 SEC31AO94979 1220 aaKnown RBP13.77□□□□□ -0.21
RPS28-201ENST00000417088 OR6B1O95007 311 aa13.77□□□□□ -0.21
RPS28-201ENST00000417088 NCF1P14598 390 aaPredicted RBP13.77□□□□□ -0.21
RPS28-201ENST00000417088 ZNF10P21506 573 aaPredicted RBP13.77□□□□□ -0.21
RPS28-201ENST00000417088 LIM2P55344 173 aa13.77□□□□□ -0.21
RPS28-201ENST00000417088 RIPPLY3P57055 190 aa13.77□□□□□ -0.21
RPS28-201ENST00000417088 DR1Q01658 176 aa13.77□□□□□ -0.21
RPS28-201ENST00000417088 PDIA2Q13087 525 aaKnown RBP13.77□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms