RNA–Protein interactions for RNA: ENST00000415083.6

SS18-203, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SS18, Length 3,414 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-203ENST00000415083 SLC35A5Q9BS91 424 aa9.44□□□□□ -0.9
SS18-203ENST00000415083 C6orf62Q9GZU0 229 aaPredicted RBP9.44□□□□□ -0.9
SS18-203ENST00000415083 OR51B5Q9H339 312 aa9.44□□□□□ -0.9
SS18-203ENST00000415083 HHATLQ9HCP6 504 aa9.44□□□□□ -0.9
SS18-203ENST00000415083 DOCK9Q9BZ29 2069 aa9.44□□□□□ -0.9
SS18-203ENST00000415083 TRBV4-1A0A0J9YWV2 114 aa9.43□□□□□ -0.9
SS18-203ENST00000415083 ANTXRLA6NF34 631 aa9.43□□□□□ -0.9
SS18-203ENST00000415083 H3BM21 787 aa9.43□□□□□ -0.9
SS18-203ENST00000415083 ARHGAP33O14559 1287 aa9.43□□□□□ -0.9
SS18-203ENST00000415083 TGM5O43548 720 aa9.43□□□□□ -0.9
SS18-203ENST00000415083 MOSPD3O75425 235 aa9.43□□□□□ -0.9
SS18-203ENST00000415083 LEFTY1O75610 366 aa9.43□□□□□ -0.9
SS18-203ENST00000415083 LINC00271P0C7V0 271 aa9.43□□□□□ -0.9
SS18-203ENST00000415083 FEN1P39748 380 aaKnown RBP9.43□□□□□ -0.9
SS18-203ENST00000415083 UGT2B15P54855 530 aa9.43□□□□□ -0.9
SS18-203ENST00000415083 SPIBQ01892 262 aa9.43□□□□□ -0.9
SS18-203ENST00000415083 SP3Q02447 781 aa9.43□□□□□ -0.9
SS18-203ENST00000415083 FAM71E1Q6IPT2 247 aa9.43□□□□□ -0.9
SS18-203ENST00000415083 PAQR6Q6TCH4 344 aa9.43□□□□□ -0.9
SS18-203ENST00000415083 GDPD4Q6W3E5 623 aa9.43□□□□□ -0.9
SS18-203ENST00000415083 CYB5D2Q8WUJ1 264 aa9.43□□□□□ -0.9
SS18-203ENST00000415083 FGF11Q92914 225 aa9.43□□□□□ -0.9
SS18-203ENST00000415083 TCEAL4Q96EI5 215 aa9.43□□□□□ -0.9
SS18-203ENST00000415083 FAM129BQ96TA1 746 aa9.43□□□□□ -0.9
SS18-203ENST00000415083 TCF25Q9BQ70 676 aa9.43□□□□□ -0.9
SS18-203ENST00000415083 MRPL17Q9NRX2 175 aaKnown RBP9.43□□□□□ -0.9
SS18-203ENST00000415083 SH3BP4Q9P0V3 963 aa9.43□□□□□ -0.9
SS18-203ENST00000415083 TAAR2Q9P1P5 351 aa9.43□□□□□ -0.9
SS18-203ENST00000415083 MAP4K5Q9Y4K4 846 aa9.43□□□□□ -0.9
SS18-203ENST00000415083 SNX11Q9Y5W9 270 aa9.43□□□□□ -0.9
SS18-203ENST00000415083 CKAP5Q14008 2032 aa9.43□□□□□ -0.9
SS18-203ENST00000415083 MUC22E2RYF6 1773 aaPredicted RBP9.43□□□□□ -0.9
SS18-203ENST00000415083 WASH3PC4AMC7 463 aa9.43□□□□□ -0.9
SS18-203ENST00000415083 PSMD11O00231 422 aa9.43□□□□□ -0.9
SS18-203ENST00000415083 TAF4O00268 1085 aa9.43□□□□□ -0.9
SS18-203ENST00000415083 WWP2O00308 870 aa9.43□□□□□ -0.9
SS18-203ENST00000415083 PITPNM1O00562 1244 aa9.43□□□□□ -0.9
SS18-203ENST00000415083 TGFB1P01137 390 aa9.43□□□□□ -0.9
SS18-203ENST00000415083 CKMP06732 381 aa9.43□□□□□ -0.9
SS18-203ENST00000415083 CASP3P42574 277 aa9.43□□□□□ -0.9
SS18-203ENST00000415083 RPS26P62854 115 aaKnown RBP9.43□□□□□ -0.9
SS18-203ENST00000415083 PRKCDQ05655 676 aa9.43□□□□□ -0.9
SS18-203ENST00000415083 ELP6Q0PNE2 266 aa9.43□□□□□ -0.9
SS18-203ENST00000415083 SCARB2Q14108 478 aa9.43□□□□□ -0.9
SS18-203ENST00000415083 GRIN2CQ14957 1233 aa9.43□□□□□ -0.9
SS18-203ENST00000415083 TAF12Q16514 161 aa9.43□□□□□ -0.9
SS18-203ENST00000415083 CRB2Q5IJ48 1285 aa9.43□□□□□ -0.9
SS18-203ENST00000415083 C10orf62Q5T681 223 aaPredicted RBP9.43□□□□□ -0.9
SS18-203ENST00000415083 PNCKQ6P2M8 343 aa9.43□□□□□ -0.9
SS18-203ENST00000415083 PHF6Q8IWS0 365 aaKnown RBP eCLIP9.43□□□□□ -0.9
SS18-203ENST00000415083 ZNF366Q8N895 744 aa9.43□□□□□ -0.9
SS18-203ENST00000415083 C16orf78Q8WTQ4 265 aa9.43□□□□□ -0.9
SS18-203ENST00000415083 POP5Q969H6 163 aaKnown RBP9.43□□□□□ -0.9
SS18-203ENST00000415083 NEDD4LQ96PU5 975 aa9.43□□□□□ -0.9
SS18-203ENST00000415083 CTRCQ99895 268 aa9.43□□□□□ -0.9
SS18-203ENST00000415083 FUZQ9BT04 418 aa9.43□□□□□ -0.9
SS18-203ENST00000415083 SPATA9Q9BWV2 254 aa9.43□□□□□ -0.9
SS18-203ENST00000415083 CXorf36Q9H7Y0 433 aa9.43□□□□□ -0.9
SS18-203ENST00000415083 KCND3Q9UK17 655 aa9.43□□□□□ -0.9
SS18-203ENST00000415083 HAT1O14929 419 aa9.43□□□□□ -0.9
SS18-203ENST00000415083 KIAA0513O60268 411 aa9.43□□□□□ -0.9
SS18-203ENST00000415083 C1orf105O95561 183 aa9.43□□□□□ -0.9
SS18-203ENST00000415083 TCEA1P23193 301 aaKnown RBP9.43□□□□□ -0.9
SS18-203ENST00000415083 CNR2P34972 360 aa9.43□□□□□ -0.9
SS18-203ENST00000415083 RFX2P48378 723 aa9.43□□□□□ -0.9
SS18-203ENST00000415083 TBPL1P62380 186 aa9.43□□□□□ -0.9
SS18-203ENST00000415083 TUBA1BP68363 451 aa9.43□□□□□ -0.9
SS18-203ENST00000415083 DEFB103AP81534 67 aa9.43□□□□□ -0.9
SS18-203ENST00000415083 ZNF181Q2M3W8 571 aa9.43□□□□□ -0.9
SS18-203ENST00000415083 USP43Q70EL4 1123 aa9.43□□□□□ -0.9
SS18-203ENST00000415083 TUBA1AQ71U36 451 aa9.43□□□□□ -0.9
SS18-203ENST00000415083 C11orf65Q8NCR3 313 aa9.43□□□□□ -0.9
SS18-203ENST00000415083 OR52N2Q8NGI0 321 aa9.43□□□□□ -0.9
SS18-203ENST00000415083 FAM83DQ9H4H8 585 aa9.43□□□□□ -0.9
SS18-203ENST00000415083 SERHL2Q9H4I8 314 aa9.43□□□□□ -0.9
SS18-203ENST00000415083 TMEM38AQ9H6F2 299 aa9.43□□□□□ -0.9
SS18-203ENST00000415083 REEP4Q9H6H4 257 aa9.43□□□□□ -0.9
SS18-203ENST00000415083 CPNE5Q9HCH3 593 aa9.43□□□□□ -0.9
SS18-203ENST00000415083 C14orf119Q9NWQ9 140 aa9.43□□□□□ -0.9
SS18-203ENST00000415083 CCDC59Q9P031 241 aaKnown RBP9.43□□□□□ -0.9
SS18-203ENST00000415083 MUTYHQ9UIF7 546 aa9.43□□□□□ -0.9
SS18-203ENST00000415083 SPEGQ15772 3267 aa9.42□□□□□ -0.9
SS18-203ENST00000415083 PQBP1O60828 265 aaKnown RBP9.42□□□□□ -0.9
SS18-203ENST00000415083 POP4O95707 220 aaKnown RBP9.42□□□□□ -0.9
SS18-203ENST00000415083 ZNF24P17028 368 aa9.42□□□□□ -0.9
SS18-203ENST00000415083 SERPINB10P48595 397 aa9.42□□□□□ -0.9
SS18-203ENST00000415083 PCYT1AP49585 367 aa9.42□□□□□ -0.9
SS18-203ENST00000415083 DCDC1P59894 354 aa9.42□□□□□ -0.9
SS18-203ENST00000415083 ZNF79Q15937 498 aa9.42□□□□□ -0.9
SS18-203ENST00000415083 ARSIQ5FYB1 569 aa9.42□□□□□ -0.9
SS18-203ENST00000415083 OLIG3Q7RTU3 272 aa9.42□□□□□ -0.9
SS18-203ENST00000415083 TMPRSS11BQ86T26 416 aa9.42□□□□□ -0.9
SS18-203ENST00000415083 ZNF547Q8IVP9 402 aa9.42□□□□□ -0.9
SS18-203ENST00000415083 FAM9CQ8IZT9 166 aa9.42□□□□□ -0.9
SS18-203ENST00000415083 CHAC2Q8WUX2 184 aa9.42□□□□□ -0.9
SS18-203ENST00000415083 WDR34Q96EX3 536 aa9.42□□□□□ -0.9
SS18-203ENST00000415083 CDCA4Q9BXL8 241 aa9.42□□□□□ -0.9
SS18-203ENST00000415083 NMNAT1Q9HAN9 279 aaPredicted RBP9.42□□□□□ -0.9
SS18-203ENST00000415083 DMRT3Q9NQL9 472 aa9.42□□□□□ -0.9
SS18-203ENST00000415083 WDR70Q9NW82 654 aa9.42□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms