RNA–Protein interactions for RNA: ENST00000409458.3

GPNMB-203, Transcript of glycoprotein nmb, humanhuman

TSL 1 (best) BASIC

Gene GPNMB, Length 1,673 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPNMB-203ENST00000409458 OR10A6Q8NH74 314 aa13.36□□□□□ -0.27
GPNMB-203ENST00000409458 UTP15Q8TED0 518 aaKnown RBP13.36□□□□□ -0.27
GPNMB-203ENST00000409458 UCN3Q969E3 161 aa13.36□□□□□ -0.27
GPNMB-203ENST00000409458 ZC3H10Q96K80 434 aaKnown RBP13.36□□□□□ -0.27
GPNMB-203ENST00000409458 ZNF583Q96ND8 569 aa13.36□□□□□ -0.27
GPNMB-203ENST00000409458 TRAPPC9Q96Q05 1148 aa13.36□□□□□ -0.27
GPNMB-203ENST00000409458 TBCDQ9BTW9 1192 aa13.36□□□□□ -0.27
GPNMB-203ENST00000409458 THUMPD3Q9BV44 507 aaKnown RBP13.36□□□□□ -0.27
GPNMB-203ENST00000409458 FAM60AQ9NP50 221 aa13.36□□□□□ -0.27
GPNMB-203ENST00000409458 C5AR2Q9P296 337 aa13.36□□□□□ -0.27
GPNMB-203ENST00000409458 LRIT1Q9P2V4 623 aa13.36□□□□□ -0.27
GPNMB-203ENST00000409458 WBP11Q9Y2W2 641 aaKnown RBP13.36□□□□□ -0.27
GPNMB-203ENST00000409458 CACNA1EQ15878 2313 aa13.36□□□□□ -0.27
GPNMB-203ENST00000409458 A0A1B0GTQ1 180 aa13.35□□□□□ -0.27
GPNMB-203ENST00000409458 C1orf226A1L170 272 aa13.35□□□□□ -0.27
GPNMB-203ENST00000409458 TBX19O60806 448 aa13.35□□□□□ -0.27
GPNMB-203ENST00000409458 PRKRAO75569 313 aaKnown RBP13.35□□□□□ -0.27
GPNMB-203ENST00000409458 C6orf47O95873 294 aa13.35□□□□□ -0.27
GPNMB-203ENST00000409458 C8BP07358 591 aa13.35□□□□□ -0.27
GPNMB-203ENST00000409458 MYF5P13349 255 aa13.35□□□□□ -0.27
GPNMB-203ENST00000409458 ANPEPP15144 967 aa13.35□□□□□ -0.27
GPNMB-203ENST00000409458 NCK1P16333 377 aa13.35□□□□□ -0.27
GPNMB-203ENST00000409458 HTR1EP28566 365 aa13.35□□□□□ -0.27
GPNMB-203ENST00000409458 TSFMP43897 325 aaKnown RBP13.35□□□□□ -0.27
GPNMB-203ENST00000409458 EPHA4P54764 986 aa13.35□□□□□ -0.27
GPNMB-203ENST00000409458 SESN3P58005 492 aa13.35□□□□□ -0.27
GPNMB-203ENST00000409458 BTN3A2P78410 334 aa13.35□□□□□ -0.27
GPNMB-203ENST00000409458 SLC9A5Q14940 896 aa13.35□□□□□ -0.27
GPNMB-203ENST00000409458 FXNQ16595 210 aa13.35□□□□□ -0.27
GPNMB-203ENST00000409458 DEFB110Q30KQ9 67 aa13.35□□□□□ -0.27
GPNMB-203ENST00000409458 NKAIN2Q5VXU1 208 aa13.35□□□□□ -0.27
GPNMB-203ENST00000409458 LCN8Q6JVE9 175 aa13.35□□□□□ -0.27
GPNMB-203ENST00000409458 FAM180BQ6P0A1 224 aa13.35□□□□□ -0.27
GPNMB-203ENST00000409458 RNF111Q6ZNA4 994 aa13.35□□□□□ -0.27
GPNMB-203ENST00000409458 ZNF621Q6ZSS3 439 aa13.35□□□□□ -0.27
GPNMB-203ENST00000409458 KANSL1Q7Z3B3 1105 aa13.35□□□□□ -0.27
GPNMB-203ENST00000409458 GATAD2AQ86YP4 633 aa13.35□□□□□ -0.27
GPNMB-203ENST00000409458 CAMKVQ8NCB2 501 aa13.35□□□□□ -0.27
GPNMB-203ENST00000409458 SRFBP1Q8NEF9 429 aaKnown RBP13.35□□□□□ -0.27
GPNMB-203ENST00000409458 RERGQ96A58 199 aaPredicted RBP13.35□□□□□ -0.27
GPNMB-203ENST00000409458 RSRC1Q96IZ7 334 aaKnown RBP13.35□□□□□ -0.27
GPNMB-203ENST00000409458 MAP3K3Q99759 626 aa13.35□□□□□ -0.27
GPNMB-203ENST00000409458 SH3GL1Q99961 368 aa13.35□□□□□ -0.27
GPNMB-203ENST00000409458 ECSITQ9BQ95 431 aa13.35□□□□□ -0.27
GPNMB-203ENST00000409458 MUC13Q9H3R2 512 aa13.35□□□□□ -0.27
GPNMB-203ENST00000409458 KAT8Q9H7Z6 458 aaKnown RBP13.35□□□□□ -0.27
GPNMB-203ENST00000409458 ASB4Q9Y574 426 aa13.35□□□□□ -0.27
GPNMB-203ENST00000409458 SNX13Q9Y5W8 968 aa13.35□□□□□ -0.27
GPNMB-203ENST00000409458 ADAMTS9Q9P2N4 1935 aa13.35□□□□□ -0.27
GPNMB-203ENST00000409458 ZDBF2Q9HCK1 2354 aa13.35□□□□□ -0.27
GPNMB-203ENST00000409458 TCRBV3S1A0A5B6 114 aa13.34□□□□□ -0.27
GPNMB-203ENST00000409458 SLC9B1P1A6NJY1 282 aa13.34□□□□□ -0.27
GPNMB-203ENST00000409458 KIF1CO43896 1103 aaKnown RBP13.34□□□□□ -0.27
GPNMB-203ENST00000409458 SCELO95171 688 aa13.34□□□□□ -0.27
GPNMB-203ENST00000409458 EPN2O95208 641 aa13.34□□□□□ -0.27
GPNMB-203ENST00000409458 STAMBPO95630 424 aa13.34□□□□□ -0.27
GPNMB-203ENST00000409458 CFIP05156 583 aa13.34□□□□□ -0.27
GPNMB-203ENST00000409458 ABCB1P08183 1280 aaPredicted RBP13.34□□□□□ -0.27
GPNMB-203ENST00000409458 SMIM10L1P0DMW3 83 aa13.34□□□□□ -0.27
GPNMB-203ENST00000409458 PPM1FP49593 454 aaPredicted RBP13.34□□□□□ -0.27
GPNMB-203ENST00000409458 HBA1P69905 142 aa13.34□□□□□ -0.27
GPNMB-203ENST00000409458 SLC34A1Q06495 639 aa13.34□□□□□ -0.27
GPNMB-203ENST00000409458 TGM3Q08188 693 aa13.34□□□□□ -0.27
GPNMB-203ENST00000409458 LRRC74AQ0VAA2 488 aa13.34□□□□□ -0.27
GPNMB-203ENST00000409458 COL9A2Q14055 689 aaPredicted RBP13.34□□□□□ -0.27
GPNMB-203ENST00000409458 NDUFAF5Q5TEU4 345 aa13.34□□□□□ -0.27
GPNMB-203ENST00000409458 ZNF551Q7Z340 670 aaPredicted RBP13.34□□□□□ -0.27
GPNMB-203ENST00000409458 GPR155Q7Z3F1 870 aa13.34□□□□□ -0.27
GPNMB-203ENST00000409458 SMIM10Q96HG1 83 aa13.34□□□□□ -0.27
GPNMB-203ENST00000409458 LRGUKQ96M69 825 aa13.34□□□□□ -0.27
GPNMB-203ENST00000409458 TGM7Q96PF1 710 aa13.34□□□□□ -0.27
GPNMB-203ENST00000409458 PHF12Q96QT6 1004 aa13.34□□□□□ -0.27
GPNMB-203ENST00000409458 COPS7BQ9H9Q2 264 aaPredicted RBP13.34□□□□□ -0.27
GPNMB-203ENST00000409458 SLAMF7Q9NQ25 335 aa13.34□□□□□ -0.27
GPNMB-203ENST00000409458 ACTR3BQ9P1U1 418 aa13.34□□□□□ -0.27
GPNMB-203ENST00000409458 MRPS2Q9Y399 296 aaKnown RBP13.34□□□□□ -0.27
GPNMB-203ENST00000409458 ATG4BQ9Y4P1 393 aa13.34□□□□□ -0.27
GPNMB-203ENST00000409458 PCDHB3Q9Y5E6 796 aa13.34□□□□□ -0.27
GPNMB-203ENST00000409458 GOLGA4Q13439 2230 aaKnown RBP13.34□□□□□ -0.27
GPNMB-203ENST00000409458 PI4KAP42356 2102 aa13.34□□□□□ -0.27
GPNMB-203ENST00000409458 PCDH15Q96QU1 1955 aa13.34□□□□□ -0.27
GPNMB-203ENST00000409458 FAM220BPB1ANY3 271 aa13.34□□□□□ -0.27
GPNMB-203ENST00000409458 PDPK1O15530 556 aa13.34□□□□□ -0.27
GPNMB-203ENST00000409458 NUDT21O43809 227 aaKnown RBP13.34□□□□□ -0.27
GPNMB-203ENST00000409458 EIF2S1P05198 315 aaKnown RBP13.34□□□□□ -0.27
GPNMB-203ENST00000409458 CTSBP07858 339 aa13.34□□□□□ -0.27
GPNMB-203ENST00000409458 ZCCHC18P0CG32 403 aa13.34□□□□□ -0.27
GPNMB-203ENST00000409458 ENGP17813 658 aa13.34□□□□□ -0.27
GPNMB-203ENST00000409458 ALDH4A1P30038 563 aa13.34□□□□□ -0.27
GPNMB-203ENST00000409458 GZMMP51124 257 aa13.34□□□□□ -0.27
GPNMB-203ENST00000409458 OR1D5P58170 312 aa13.34□□□□□ -0.27
GPNMB-203ENST00000409458 HLA-BQ31612 363 aa13.34□□□□□ -0.27
GPNMB-203ENST00000409458 CALHM3Q86XJ0 350 aa13.34□□□□□ -0.27
GPNMB-203ENST00000409458 SPPL2CQ8IUH8 684 aa13.34□□□□□ -0.27
GPNMB-203ENST00000409458 PHF6Q8IWS0 365 aaKnown RBP eCLIP13.34□□□□□ -0.27
GPNMB-203ENST00000409458 CLEC4FQ8N1N0 589 aa13.34□□□□□ -0.27
GPNMB-203ENST00000409458 DTWD1Q8N5C7 304 aa13.34□□□□□ -0.27
GPNMB-203ENST00000409458 CSNK1A1LQ8N752 337 aa13.34□□□□□ -0.27
GPNMB-203ENST00000409458 OR2T12Q8NG77 320 aa13.34□□□□□ -0.27
GPNMB-203ENST00000409458 GOT1L1Q8NHS2 421 aaPredicted RBP13.34□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms