RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 ZNF697Q5TEC3 545 aa11.49□□□□□ -0.57
HMGB1-206ENST00000405805 LSMEM1Q8N8F7 131 aa11.49□□□□□ -0.57
HMGB1-206ENST00000405805 SORBS1Q9BX66 1292 aaKnown RBP11.49□□□□□ -0.57
HMGB1-206ENST00000405805 POPDC3Q9HBV1 291 aa11.49□□□□□ -0.57
HMGB1-206ENST00000405805 ELOVL2Q9NXB9 296 aa11.49□□□□□ -0.57
HMGB1-206ENST00000405805 SLC25A37Q9NYZ2 338 aa11.49□□□□□ -0.57
HMGB1-206ENST00000405805 ASF1AQ9Y294 204 aa11.49□□□□□ -0.57
HMGB1-206ENST00000405805 ZNF701M0R085 212 aaPredicted RBP11.48□□□□□ -0.57
HMGB1-206ENST00000405805 SEC14L2O76054 403 aa11.48□□□□□ -0.57
HMGB1-206ENST00000405805 CH25HO95992 272 aa11.48□□□□□ -0.57
HMGB1-206ENST00000405805 KLKB1P03952 638 aa11.48□□□□□ -0.57
HMGB1-206ENST00000405805 SDC1P18827 310 aa11.48□□□□□ -0.57
HMGB1-206ENST00000405805 GSTM5P46439 218 aa11.48□□□□□ -0.57
HMGB1-206ENST00000405805 DAPP51397 102 aa11.48□□□□□ -0.57
HMGB1-206ENST00000405805 PGDP52209 483 aa11.48□□□□□ -0.57
HMGB1-206ENST00000405805 ST8SIA6P61647 398 aa11.48□□□□□ -0.57
HMGB1-206ENST00000405805 COQ5Q5HYK3 327 aa11.48□□□□□ -0.57
HMGB1-206ENST00000405805 ADGRD2Q7Z7M1 963 aa11.48□□□□□ -0.57
HMGB1-206ENST00000405805 PHYKPLQ8IUZ5 450 aa11.48□□□□□ -0.57
HMGB1-206ENST00000405805 NAGSQ8N159 534 aa11.48□□□□□ -0.57
HMGB1-206ENST00000405805 KRT78Q8N1N4 520 aa11.48□□□□□ -0.57
HMGB1-206ENST00000405805 CSGALNACT1Q8TDX6 532 aa11.48□□□□□ -0.57
HMGB1-206ENST00000405805 PIGKQ92643 395 aa11.48□□□□□ -0.57
HMGB1-206ENST00000405805 TESCQ96BS2 214 aa11.48□□□□□ -0.57
HMGB1-206ENST00000405805 SLC35A5Q9BS91 424 aa11.48□□□□□ -0.57
HMGB1-206ENST00000405805 MCMBPQ9BTE3 642 aa11.48□□□□□ -0.57
HMGB1-206ENST00000405805 TMEM121BQ9BXQ6 578 aaPredicted RBP11.48□□□□□ -0.57
HMGB1-206ENST00000405805 SLC6A15Q9H2J7 730 aa11.48□□□□□ -0.57
HMGB1-206ENST00000405805 TM9SF3Q9HD45 589 aa11.48□□□□□ -0.57
HMGB1-206ENST00000405805 AP3M1Q9Y2T2 418 aa11.48□□□□□ -0.57
HMGB1-206ENST00000405805 MAP1BP46821 2468 aaKnown RBP11.48□□□□□ -0.57
HMGB1-206ENST00000405805 SLC28A2O43868 658 aa11.48□□□□□ -0.57
HMGB1-206ENST00000405805 ORC5O43913 435 aa11.48□□□□□ -0.57
HMGB1-206ENST00000405805 PCDH7O60245 1069 aa11.48□□□□□ -0.57
HMGB1-206ENST00000405805 NR2F1P10589 423 aa11.48□□□□□ -0.57
HMGB1-206ENST00000405805 SSTR4P31391 388 aa11.48□□□□□ -0.57
HMGB1-206ENST00000405805 CENPAP49450 140 aa11.48□□□□□ -0.57
HMGB1-206ENST00000405805 RPS13P62277 151 aaKnown RBP11.48□□□□□ -0.57
HMGB1-206ENST00000405805 IFI44LQ53G44 452 aa11.48□□□□□ -0.57
HMGB1-206ENST00000405805 CATSPEREQ5SY80 951 aa11.48□□□□□ -0.57
HMGB1-206ENST00000405805 MANEALQ5VSG8 457 aa11.48□□□□□ -0.57
HMGB1-206ENST00000405805 AGAP7PQ5VUJ5 663 aa11.48□□□□□ -0.57
HMGB1-206ENST00000405805 USP30Q70CQ3 517 aa11.48□□□□□ -0.57
HMGB1-206ENST00000405805 ZSCAN2Q7Z7L9 614 aaPredicted RBP11.48□□□□□ -0.57
HMGB1-206ENST00000405805 ZFP41Q8N8Y5 198 aa11.48□□□□□ -0.57
HMGB1-206ENST00000405805 RNASE11Q8TAA1 199 aaKnown RBP11.48□□□□□ -0.57
HMGB1-206ENST00000405805 SLC38A4Q969I6 547 aa11.48□□□□□ -0.57
HMGB1-206ENST00000405805 MGME1Q9BQP7 344 aa11.48□□□□□ -0.57
HMGB1-206ENST00000405805 KCNH6Q9H252 994 aa11.48□□□□□ -0.57
HMGB1-206ENST00000405805 FAM83DQ9H4H8 585 aa11.48□□□□□ -0.57
HMGB1-206ENST00000405805 TBC1D17Q9HA65 648 aa11.48□□□□□ -0.57
HMGB1-206ENST00000405805 SCPEP1Q9HB40 452 aa11.48□□□□□ -0.57
HMGB1-206ENST00000405805 C5AR2Q9P296 337 aa11.48□□□□□ -0.57
HMGB1-206ENST00000405805 KIAA0513O60268 411 aa11.48□□□□□ -0.57
HMGB1-206ENST00000405805 KLK1P06870 262 aa11.48□□□□□ -0.57
HMGB1-206ENST00000405805 CTGFP29279 349 aa11.48□□□□□ -0.57
HMGB1-206ENST00000405805 PIK3CBP42338 1070 aa11.48□□□□□ -0.57
HMGB1-206ENST00000405805 GRIK2Q13002 908 aa11.48□□□□□ -0.57
HMGB1-206ENST00000405805 DEFB115Q30KQ5 88 aa11.48□□□□□ -0.57
HMGB1-206ENST00000405805 INAVAQ3KP66 663 aa11.48□□□□□ -0.57
HMGB1-206ENST00000405805 ZCCHC12Q6PEW1 402 aa11.48□□□□□ -0.57
HMGB1-206ENST00000405805 BEND5Q7L4P6 421 aa11.48□□□□□ -0.57
HMGB1-206ENST00000405805 NXPE1Q8N323 547 aa11.48□□□□□ -0.57
HMGB1-206ENST00000405805 RHBDF1Q96CC6 855 aa11.48□□□□□ -0.57
HMGB1-206ENST00000405805 SYNDIG1Q9H7V2 258 aa11.48□□□□□ -0.57
HMGB1-206ENST00000405805 SSR3Q9UNL2 185 aa11.48□□□□□ -0.57
HMGB1-206ENST00000405805 FAM155AB1AL88 458 aaPredicted RBP11.47□□□□□ -0.57
HMGB1-206ENST00000405805 M0QZQ0 153 aa11.47□□□□□ -0.57
HMGB1-206ENST00000405805 AP3D1O14617 1153 aa11.47□□□□□ -0.57
HMGB1-206ENST00000405805 PEX11BO96011 259 aa11.47□□□□□ -0.57
HMGB1-206ENST00000405805 ACPPP15309 386 aa11.47□□□□□ -0.57
HMGB1-206ENST00000405805 POLR2CP19387 275 aaPredicted RBP11.47□□□□□ -0.57
HMGB1-206ENST00000405805 CSNK2BP67870 215 aa11.47□□□□□ -0.57
HMGB1-206ENST00000405805 TARDBPQ13148 414 aaKnown RBP eCLIP11.47□□□□□ -0.57
HMGB1-206ENST00000405805 NOGQ13253 232 aa11.47□□□□□ -0.57
HMGB1-206ENST00000405805 GPR17Q13304 367 aa11.47□□□□□ -0.57
HMGB1-206ENST00000405805 EXOC3L2Q2M3D2 409 aa11.47□□□□□ -0.57
HMGB1-206ENST00000405805 FER1L6Q2WGJ9 1857 aa11.47□□□□□ -0.57
HMGB1-206ENST00000405805 GCNT6Q5T4J0 391 aa11.47□□□□□ -0.57
HMGB1-206ENST00000405805 GPRC6AQ5T6X5 926 aa11.47□□□□□ -0.57
HMGB1-206ENST00000405805 TRIM40Q6P9F5 258 aa11.47□□□□□ -0.57
HMGB1-206ENST00000405805 HAGHLQ6PII5 290 aaPredicted RBP11.47□□□□□ -0.57
HMGB1-206ENST00000405805 RNF130Q86XS8 419 aa11.47□□□□□ -0.57
HMGB1-206ENST00000405805 BCL7CQ8WUZ0 217 aaPredicted RBP11.47□□□□□ -0.57
HMGB1-206ENST00000405805 SORCS1Q8WY21 1168 aa11.47□□□□□ -0.57
HMGB1-206ENST00000405805 ZDHHC4Q9NPG8 344 aa11.47□□□□□ -0.57
HMGB1-206ENST00000405805 TMEM138Q9NPI0 162 aa11.47□□□□□ -0.57
HMGB1-206ENST00000405805 ARHGEF33A8MVX0 844 aa11.47□□□□□ -0.57
HMGB1-206ENST00000405805 FAM227AF5H4B4 570 aa11.47□□□□□ -0.57
HMGB1-206ENST00000405805 CASKO14936 926 aa11.47□□□□□ -0.57
HMGB1-206ENST00000405805 ADAMDEC1O15204 470 aa11.47□□□□□ -0.57
HMGB1-206ENST00000405805 CD40LGP29965 261 aa11.47□□□□□ -0.57
HMGB1-206ENST00000405805 TIE1P35590 1138 aa11.47□□□□□ -0.57
HMGB1-206ENST00000405805 HMGCLP35914 325 aa11.47□□□□□ -0.57
HMGB1-206ENST00000405805 ISL1P61371 349 aa11.47□□□□□ -0.57
HMGB1-206ENST00000405805 MC1RQ01726 317 aa11.47□□□□□ -0.57
HMGB1-206ENST00000405805 SRSF11Q05519 484 aaKnown RBP11.47□□□□□ -0.57
HMGB1-206ENST00000405805 SCARB2Q14108 478 aa11.47□□□□□ -0.57
HMGB1-206ENST00000405805 OCLNQ16625 522 aa11.47□□□□□ -0.57
HMGB1-206ENST00000405805 LCN1P1Q5VSP4 162 aa11.47□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms