RNA–Protein interactions for RNA: ENST00000400301.5

USP48-204, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 4,309 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-204ENST00000400301 LUZP2Q86TE4 346 aa17.79■□□□□ 0.44
USP48-204ENST00000400301 TCEANCQ8N8B7 351 aa17.79■□□□□ 0.44
USP48-204ENST00000400301 HMGCLL1Q8TB92 370 aa17.79■□□□□ 0.44
USP48-204ENST00000400301 TMEM203Q969S6 136 aa17.79■□□□□ 0.44
USP48-204ENST00000400301 CALML5Q9NZT1 146 aa17.79■□□□□ 0.44
USP48-204ENST00000400301 PRR23D1E9PI22 279 aaPredicted RBP17.79■□□□□ 0.44
USP48-204ENST00000400301 BOLA2-SMG1P6H3BVE0 249 aa17.79■□□□□ 0.44
USP48-204ENST00000400301 IDH3BO43837 385 aa17.79■□□□□ 0.44
USP48-204ENST00000400301 LCKP06239 509 aa17.79■□□□□ 0.44
USP48-204ENST00000400301 PRR23D2P0DMB1 279 aaPredicted RBP17.79■□□□□ 0.44
USP48-204ENST00000400301 ALPPL2P10696 532 aa17.79■□□□□ 0.44
USP48-204ENST00000400301 FUT4P22083 530 aa17.79■□□□□ 0.44
USP48-204ENST00000400301 ZNF33BQ06732 778 aa17.79■□□□□ 0.44
USP48-204ENST00000400301 C2orf27AQ580R0 203 aa17.79■□□□□ 0.44
USP48-204ENST00000400301 VN1R5Q7Z5H4 357 aa17.79■□□□□ 0.44
USP48-204ENST00000400301 VRK3Q8IV63 474 aa17.79■□□□□ 0.44
USP48-204ENST00000400301 C12orf76Q8N812 135 aaPredicted RBP17.79■□□□□ 0.44
USP48-204ENST00000400301 OR52N2Q8NGI0 321 aa17.79■□□□□ 0.44
USP48-204ENST00000400301 MRPL48Q96GC5 212 aaKnown RBP17.79■□□□□ 0.44
USP48-204ENST00000400301 XKR8Q9H6D3 395 aa17.79■□□□□ 0.44
USP48-204ENST00000400301 CLEC4EQ9ULY5 219 aa17.79■□□□□ 0.44
USP48-204ENST00000400301 CENPXA8MT69 81 aa17.79■□□□□ 0.44
USP48-204ENST00000400301 KLK8O60259 260 aa17.79■□□□□ 0.44
USP48-204ENST00000400301 C8orf89P0DMQ9 161 aa17.79■□□□□ 0.44
USP48-204ENST00000400301 MATN1P21941 496 aa17.79■□□□□ 0.44
USP48-204ENST00000400301 MPIP34949 423 aa17.79■□□□□ 0.44
USP48-204ENST00000400301 BCAP31P51572 246 aa17.79■□□□□ 0.44
USP48-204ENST00000400301 COX10Q12887 443 aa17.79■□□□□ 0.44
USP48-204ENST00000400301 ELAVL3Q14576 367 aaKnown RBP17.79■□□□□ 0.44
USP48-204ENST00000400301 NIPAL1Q6NVV3 410 aa17.79■□□□□ 0.44
USP48-204ENST00000400301 KLHL17Q6TDP4 642 aa17.79■□□□□ 0.44
USP48-204ENST00000400301 FAM46DQ8NEK8 389 aa17.79■□□□□ 0.44
USP48-204ENST00000400301 C16orf78Q8WTQ4 265 aa17.79■□□□□ 0.44
USP48-204ENST00000400301 NEU3Q9UQ49 428 aa17.79■□□□□ 0.44
USP48-204ENST00000400301 HAT1O14929 419 aa17.79■□□□□ 0.44
USP48-204ENST00000400301 NDUFS4O43181 175 aa17.79■□□□□ 0.44
USP48-204ENST00000400301 SAGP10523 405 aaPredicted RBP17.79■□□□□ 0.44
USP48-204ENST00000400301 NT5EP21589 574 aa17.79■□□□□ 0.44
USP48-204ENST00000400301 PDHA2P29803 388 aa17.79■□□□□ 0.44
USP48-204ENST00000400301 VIPR2P41587 438 aa17.79■□□□□ 0.44
USP48-204ENST00000400301 ERVK-21P61565 698 aa17.79■□□□□ 0.44
USP48-204ENST00000400301 UBTD2Q8WUN7 234 aa17.79■□□□□ 0.44
USP48-204ENST00000400301 PIK3R3Q92569 461 aa17.79■□□□□ 0.44
USP48-204ENST00000400301 GTF2A1LQ9UNN4 478 aa17.79■□□□□ 0.44
USP48-204ENST00000400301 HS3ST2Q9Y278 367 aa17.79■□□□□ 0.44
USP48-204ENST00000400301 RASGRP1O95267 797 aa17.78■□□□□ 0.44
USP48-204ENST00000400301 PAK4O96013 591 aaPredicted RBP17.78■□□□□ 0.44
USP48-204ENST00000400301 COPZ1P61923 177 aa17.78■□□□□ 0.44
USP48-204ENST00000400301 GJD3Q8N144 294 aa17.78■□□□□ 0.44
USP48-204ENST00000400301 MINDY2Q8NBR6 621 aa17.78■□□□□ 0.44
USP48-204ENST00000400301 OR5P2Q8WZ92 322 aa17.78■□□□□ 0.44
USP48-204ENST00000400301 FCRL4Q96PJ5 515 aa17.78■□□□□ 0.44
USP48-204ENST00000400301 KMOO15229 486 aa17.78■□□□□ 0.44
USP48-204ENST00000400301 TIMP2P16035 220 aa17.78■□□□□ 0.44
USP48-204ENST00000400301 OPRL1P41146 370 aa17.78■□□□□ 0.44
USP48-204ENST00000400301 MC1RQ01726 317 aa17.78■□□□□ 0.44
USP48-204ENST00000400301 IRAK1BP1Q5VVH5 260 aa17.78■□□□□ 0.44
USP48-204ENST00000400301 NEK10Q6ZWH5 1172 aa17.78■□□□□ 0.44
USP48-204ENST00000400301 PHF6Q8IWS0 365 aaKnown RBP eCLIP17.78■□□□□ 0.44
USP48-204ENST00000400301 ARMC5Q96C12 935 aa17.78■□□□□ 0.44
USP48-204ENST00000400301 CARS2Q9HA77 564 aaKnown RBP17.78■□□□□ 0.44
USP48-204ENST00000400301 NECTIN3Q9NQS3 549 aa17.78■□□□□ 0.44
USP48-204ENST00000400301 INTS6Q9UL03 887 aaKnown RBP17.78■□□□□ 0.44
USP48-204ENST00000400301 TSC22D2O75157 780 aa17.78■□□□□ 0.44
USP48-204ENST00000400301 STX11O75558 287 aa17.78■□□□□ 0.44
USP48-204ENST00000400301 ALPPP05187 535 aa17.78■□□□□ 0.44
USP48-204ENST00000400301 PRSS48Q7RTY5 328 aa17.78■□□□□ 0.44
USP48-204ENST00000400301 DNASE1L2Q92874 299 aa17.78■□□□□ 0.44
USP48-204ENST00000400301 RAB11FIP5Q9BXF6 653 aa17.78■□□□□ 0.44
USP48-204ENST00000400301 ADAP2Q9NPF8 381 aa17.78■□□□□ 0.44
USP48-204ENST00000400301 DYRK3O43781 588 aa17.77■□□□□ 0.44
USP48-204ENST00000400301 CPN2P22792 545 aa17.77■□□□□ 0.44
USP48-204ENST00000400301 DCKP27707 260 aa17.77■□□□□ 0.44
USP48-204ENST00000400301 FPGSQ05932 587 aa17.77■□□□□ 0.44
USP48-204ENST00000400301 LIPIQ6XZB0 460 aa17.77■□□□□ 0.44
USP48-204ENST00000400301 ZNF551Q7Z340 670 aaPredicted RBP17.77■□□□□ 0.44
USP48-204ENST00000400301 FAM20CQ8IXL6 584 aa17.77■□□□□ 0.44
USP48-204ENST00000400301 ALDH16A1Q8IZ83 802 aa17.77■□□□□ 0.44
USP48-204ENST00000400301 LMNTD1Q8N9Z9 388 aa17.77■□□□□ 0.44
USP48-204ENST00000400301 ZNF671Q8TAW3 534 aa17.77■□□□□ 0.44
USP48-204ENST00000400301 FOXJ1Q92949 421 aa17.77■□□□□ 0.44
USP48-204ENST00000400301 TBC1D17Q9HA65 648 aa17.77■□□□□ 0.44
USP48-204ENST00000400301 BRF2Q9HAW0 419 aa17.77■□□□□ 0.44
USP48-204ENST00000400301 BTNL2Q9UIR0 455 aa17.77■□□□□ 0.44
USP48-204ENST00000400301 OR10H1Q9Y4A9 318 aa17.77■□□□□ 0.44
USP48-204ENST00000400301 NUDT7P0C024 238 aa17.77■□□□□ 0.44
USP48-204ENST00000400301 EMX1Q04741 257 aaPredicted RBP17.77■□□□□ 0.44
USP48-204ENST00000400301 PROX2Q3B8N5 592 aa17.77■□□□□ 0.44
USP48-204ENST00000400301 KLHL22Q53GT1 634 aa17.77■□□□□ 0.44
USP48-204ENST00000400301 NRSN1Q8IZ57 195 aa17.77■□□□□ 0.44
USP48-204ENST00000400301 CLIP3Q96DZ5 547 aa17.77■□□□□ 0.44
USP48-204ENST00000400301 MMP27Q9H306 513 aa17.77■□□□□ 0.44
USP48-204ENST00000400301 ITIH1P19827 911 aa17.77■□□□□ 0.43
USP48-204ENST00000400301 LHCGRP22888 699 aa17.77■□□□□ 0.43
USP48-204ENST00000400301 FSHRP23945 695 aa17.77■□□□□ 0.43
USP48-204ENST00000400301 IL12RB1P42701 662 aa17.77■□□□□ 0.43
USP48-204ENST00000400301 SKP1P63208 163 aa17.77■□□□□ 0.43
USP48-204ENST00000400301 SELENOWP63302 87 aa17.77■□□□□ 0.43
USP48-204ENST00000400301 ZNF691Q5VV52 312 aa17.77■□□□□ 0.43
USP48-204ENST00000400301 PLET1Q6UQ28 207 aa17.77■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms