RNA–Protein interactions for RNA: ENST00000396595.7

LIMCH1-203, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-203ENST00000396595 PRAMEF11O60813 436 aa9.91□□□□□ -0.82
LIMCH1-203ENST00000396595 SOX14O95416 240 aa9.91□□□□□ -0.82
LIMCH1-203ENST00000396595 CLDN7O95471 211 aa9.91□□□□□ -0.82
LIMCH1-203ENST00000396595 JUNP05412 331 aaKnown RBP9.91□□□□□ -0.82
LIMCH1-203ENST00000396595 ACTR1BP42025 376 aa9.91□□□□□ -0.82
LIMCH1-203ENST00000396595 ACTR1AP61163 376 aa9.91□□□□□ -0.82
LIMCH1-203ENST00000396595 TRAM2Q15035 370 aa9.91□□□□□ -0.82
LIMCH1-203ENST00000396595 MAPK14Q16539 360 aa9.91□□□□□ -0.82
LIMCH1-203ENST00000396595 ZNF181Q2M3W8 571 aa9.91□□□□□ -0.82
LIMCH1-203ENST00000396595 GXYLT1Q4G148 440 aa9.91□□□□□ -0.82
LIMCH1-203ENST00000396595 ARSIQ5FYB1 569 aa9.91□□□□□ -0.82
LIMCH1-203ENST00000396595 CYS1Q717R9 158 aa9.91□□□□□ -0.82
LIMCH1-203ENST00000396595 CLDN19Q8N6F1 224 aa9.91□□□□□ -0.82
LIMCH1-203ENST00000396595 CCDC74AQ96AQ1 378 aa9.91□□□□□ -0.82
LIMCH1-203ENST00000396595 COPZ2Q9P299 210 aa9.91□□□□□ -0.82
LIMCH1-203ENST00000396595 TAC3Q9UHF0 121 aa9.91□□□□□ -0.82
LIMCH1-203ENST00000396595 SLC19A2O60779 497 aa9.9□□□□□ -0.82
LIMCH1-203ENST00000396595 OR2B3O76000 313 aa9.9□□□□□ -0.82
LIMCH1-203ENST00000396595 JUNDP17535 347 aa9.9□□□□□ -0.82
LIMCH1-203ENST00000396595 DIO3P55073 304 aa9.9□□□□□ -0.82
LIMCH1-203ENST00000396595 S100A10P60903 97 aa9.9□□□□□ -0.82
LIMCH1-203ENST00000396595 ZNF763Q0D2J5 394 aa9.9□□□□□ -0.82
LIMCH1-203ENST00000396595 GRIK2Q13002 908 aa9.9□□□□□ -0.82
LIMCH1-203ENST00000396595 HACD2Q6Y1H2 254 aa9.9□□□□□ -0.82
LIMCH1-203ENST00000396595 RPS27LQ71UM5 84 aaKnown RBP9.9□□□□□ -0.82
LIMCH1-203ENST00000396595 OSTM1Q86WC4 334 aa9.9□□□□□ -0.82
LIMCH1-203ENST00000396595 OR52E4Q8NGH9 312 aa9.9□□□□□ -0.82
LIMCH1-203ENST00000396595 OR10Q1Q8NGQ4 319 aa9.9□□□□□ -0.82
LIMCH1-203ENST00000396595 RHEBL1Q8TAI7 183 aa9.9□□□□□ -0.82
LIMCH1-203ENST00000396595 ZNF675Q8TD23 568 aa9.9□□□□□ -0.82
LIMCH1-203ENST00000396595 S100A16Q96FQ6 103 aaKnown RBP9.9□□□□□ -0.82
LIMCH1-203ENST00000396595 TM9SF2Q99805 663 aa9.9□□□□□ -0.82
LIMCH1-203ENST00000396595 GPR88Q9GZN0 384 aa9.9□□□□□ -0.82
LIMCH1-203ENST00000396595 TIGARQ9NQ88 270 aa9.9□□□□□ -0.82
LIMCH1-203ENST00000396595 ST14Q9Y5Y6 855 aa9.9□□□□□ -0.82
LIMCH1-203ENST00000396595 MTX2O75431 263 aa9.9□□□□□ -0.82
LIMCH1-203ENST00000396595 CH25HO95992 272 aa9.9□□□□□ -0.82
LIMCH1-203ENST00000396595 IL4RP24394 825 aa9.9□□□□□ -0.82
LIMCH1-203ENST00000396595 ELK4P28324 431 aa9.9□□□□□ -0.82
LIMCH1-203ENST00000396595 HLCSP50747 726 aa9.9□□□□□ -0.82
LIMCH1-203ENST00000396595 PRKCDQ05655 676 aa9.9□□□□□ -0.82
LIMCH1-203ENST00000396595 CMPK2Q5EBM0 449 aa9.9□□□□□ -0.82
LIMCH1-203ENST00000396595 TECRLQ5HYJ1 363 aa9.9□□□□□ -0.82
LIMCH1-203ENST00000396595 IFNLR1Q8IU57 520 aaPredicted RBP9.9□□□□□ -0.82
LIMCH1-203ENST00000396595 SLC5A11Q8WWX8 675 aa9.9□□□□□ -0.82
LIMCH1-203ENST00000396595 GIMAP5Q96F15 307 aa9.9□□□□□ -0.82
LIMCH1-203ENST00000396595 DHRS1Q96LJ7 313 aa9.9□□□□□ -0.82
LIMCH1-203ENST00000396595 SERINC1Q9NRX5 453 aa9.9□□□□□ -0.82
LIMCH1-203ENST00000396595 CENPMQ9NSP4 180 aa9.9□□□□□ -0.82
LIMCH1-203ENST00000396595 NLGN3Q9NZ94 848 aa9.9□□□□□ -0.82
LIMCH1-203ENST00000396595 GNG13Q9P2W3 67 aa9.9□□□□□ -0.82
LIMCH1-203ENST00000396595 SNED1Q8TER0 1413 aa9.9□□□□□ -0.82
LIMCH1-203ENST00000396595 OR6C65A6NJZ3 312 aa9.9□□□□□ -0.82
LIMCH1-203ENST00000396595 ZNF705GA8MUZ8 300 aaPredicted RBP9.9□□□□□ -0.82
LIMCH1-203ENST00000396595 LRRN3E7EW58 273 aa9.9□□□□□ -0.82
LIMCH1-203ENST00000396595 NRP1O14786 923 aa9.9□□□□□ -0.82
LIMCH1-203ENST00000396595 DENRO43583 198 aaKnown RBP9.9□□□□□ -0.82
LIMCH1-203ENST00000396595 POP7O75817 140 aaKnown RBP9.9□□□□□ -0.82
LIMCH1-203ENST00000396595 FARS2O95363 451 aaKnown RBP9.9□□□□□ -0.82
LIMCH1-203ENST00000396595 CHRNA1P02708 482 aa9.9□□□□□ -0.82
LIMCH1-203ENST00000396595 ALDOAP04075 364 aaKnown RBP9.9□□□□□ -0.82
LIMCH1-203ENST00000396595 GRIA2P42262 883 aa9.9□□□□□ -0.82
LIMCH1-203ENST00000396595 BDKRB1P46663 353 aa9.9□□□□□ -0.82
LIMCH1-203ENST00000396595 ALDH3B2P48448 385 aa9.9□□□□□ -0.82
LIMCH1-203ENST00000396595 NRIP1P48552 1158 aa9.9□□□□□ -0.82
LIMCH1-203ENST00000396595 RPS13P62277 151 aaKnown RBP9.9□□□□□ -0.82
LIMCH1-203ENST00000396595 HNRNPA0Q13151 305 aaKnown RBP9.9□□□□□ -0.82
LIMCH1-203ENST00000396595 FADDQ13158 208 aa9.9□□□□□ -0.82
LIMCH1-203ENST00000396595 FAM83HQ6ZRV2 1179 aaPredicted RBP9.9□□□□□ -0.82
LIMCH1-203ENST00000396595 CCDC120Q96HB5 630 aa9.9□□□□□ -0.82
LIMCH1-203ENST00000396595 IL12RB2Q99665 862 aa9.9□□□□□ -0.82
LIMCH1-203ENST00000396595 SMOQ99835 787 aa9.9□□□□□ -0.82
LIMCH1-203ENST00000396595 LRRN3Q9H3W5 708 aa9.9□□□□□ -0.82
LIMCH1-203ENST00000396595 SIX4Q9UIU6 781 aa9.9□□□□□ -0.82
LIMCH1-203ENST00000396595 ADAMTS6Q9UKP5 1117 aa9.9□□□□□ -0.82
LIMCH1-203ENST00000396595 C2orf92A0A1B0GVN3 265 aa9.9□□□□□ -0.83
LIMCH1-203ENST00000396595 UPK3BL1B0FP48 263 aa9.9□□□□□ -0.83
LIMCH1-203ENST00000396595 UPK3BL2E5RIL1 263 aa9.9□□□□□ -0.83
LIMCH1-203ENST00000396595 NUAK1O60285 661 aa9.9□□□□□ -0.83
LIMCH1-203ENST00000396595 RPP14O95059 124 aaKnown RBP9.9□□□□□ -0.83
LIMCH1-203ENST00000396595 C6orf47O95873 294 aa9.9□□□□□ -0.83
LIMCH1-203ENST00000396595 MAT2AP31153 395 aaKnown RBP9.9□□□□□ -0.83
LIMCH1-203ENST00000396595 SLC6A6P31641 620 aa9.9□□□□□ -0.83
LIMCH1-203ENST00000396595 SP2Q02086 613 aa9.9□□□□□ -0.83
LIMCH1-203ENST00000396595 ST3GAL4Q11206 333 aa9.9□□□□□ -0.83
LIMCH1-203ENST00000396595 MYLK3Q32MK0 819 aa9.9□□□□□ -0.83
LIMCH1-203ENST00000396595 SCGB2B2Q4G0G5 96 aa9.9□□□□□ -0.83
LIMCH1-203ENST00000396595 HSDL2Q6YN16 418 aa9.9□□□□□ -0.83
LIMCH1-203ENST00000396595 ZNF767PQ75MW2 155 aa9.9□□□□□ -0.83
LIMCH1-203ENST00000396595 DCAF4L2Q8NA75 395 aa9.9□□□□□ -0.83
LIMCH1-203ENST00000396595 KCT2Q8NC54 265 aa9.9□□□□□ -0.83
LIMCH1-203ENST00000396595 OR2L8Q8NGY9 312 aa9.9□□□□□ -0.83
LIMCH1-203ENST00000396595 FNDC8Q8TC99 324 aa9.9□□□□□ -0.83
LIMCH1-203ENST00000396595 SLC25A36Q96CQ1 311 aa9.9□□□□□ -0.83
LIMCH1-203ENST00000396595 RNF39Q9H2S5 420 aa9.9□□□□□ -0.83
LIMCH1-203ENST00000396595 PPA2Q9H2U2 334 aa9.9□□□□□ -0.83
LIMCH1-203ENST00000396595 C19orf12Q9NSK7 152 aa9.9□□□□□ -0.83
LIMCH1-203ENST00000396595 CDC14AQ9UNH5 594 aa9.9□□□□□ -0.83
LIMCH1-203ENST00000396595 NOP16Q9Y3C1 178 aaKnown RBP9.9□□□□□ -0.83
LIMCH1-203ENST00000396595 VIRMAQ69YN4 1812 aaKnown RBP9.9□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms