RNA–Protein interactions for RNA: ENST00000392003.6

COL6A3-204, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2 BASIC

Gene COL6A3, Length 3,464 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-204ENST00000392003 PRIM2P49643 509 aa9.25□□□□□ -0.93
COL6A3-204ENST00000392003 TBPL1P62380 186 aa9.25□□□□□ -0.93
COL6A3-204ENST00000392003 CDK5R2Q13319 367 aa9.25□□□□□ -0.93
COL6A3-204ENST00000392003 LAPTM4AQ15012 233 aa9.25□□□□□ -0.93
COL6A3-204ENST00000392003 C9orf50Q5SZB4 431 aa9.25□□□□□ -0.93
COL6A3-204ENST00000392003 METTL11BQ5VVY1 283 aa9.25□□□□□ -0.93
COL6A3-204ENST00000392003 SLCO4C1Q6ZQN7 724 aa9.25□□□□□ -0.93
COL6A3-204ENST00000392003 ADGRD2Q7Z7M1 963 aa9.25□□□□□ -0.93
COL6A3-204ENST00000392003 GALNT10Q86SR1 603 aa9.25□□□□□ -0.93
COL6A3-204ENST00000392003 KLHDC8AQ8IYD2 350 aa9.25□□□□□ -0.93
COL6A3-204ENST00000392003 TTC29Q8NA56 475 aaPredicted RBP9.25□□□□□ -0.93
COL6A3-204ENST00000392003 OR9A1PQ8NGU1 263 aa9.25□□□□□ -0.93
COL6A3-204ENST00000392003 SPPL2AQ8TCT8 520 aa9.25□□□□□ -0.93
COL6A3-204ENST00000392003 GANCQ8TET4 914 aa9.25□□□□□ -0.93
COL6A3-204ENST00000392003 SMARCD2Q92925 531 aa9.25□□□□□ -0.93
COL6A3-204ENST00000392003 CXorf40BQ96DE9 158 aa9.25□□□□□ -0.93
COL6A3-204ENST00000392003 PPP1R16AQ96I34 528 aa9.25□□□□□ -0.93
COL6A3-204ENST00000392003 FAM83CQ9BQN1 747 aa9.25□□□□□ -0.93
COL6A3-204ENST00000392003 TRIT1Q9H3H1 467 aaKnown RBP9.25□□□□□ -0.93
COL6A3-204ENST00000392003 NARFLQ9H6Q4 476 aa9.25□□□□□ -0.93
COL6A3-204ENST00000392003 SLC28A3Q9HAS3 691 aa9.25□□□□□ -0.93
COL6A3-204ENST00000392003 TMEFF2Q9UIK5 374 aaPredicted RBP9.25□□□□□ -0.93
COL6A3-204ENST00000392003 PCOLCE2Q9UKZ9 415 aa9.25□□□□□ -0.93
COL6A3-204ENST00000392003 PSME2Q9UL46 239 aa9.25□□□□□ -0.93
COL6A3-204ENST00000392003 HSPE1-MOB4S4R3N1 261 aa9.25□□□□□ -0.93
COL6A3-204ENST00000392003 HOXC11O43248 304 aaPredicted RBP9.25□□□□□ -0.93
COL6A3-204ENST00000392003 MATN1P21941 496 aa9.25□□□□□ -0.93
COL6A3-204ENST00000392003 BPIFB3P59826 476 aa9.25□□□□□ -0.93
COL6A3-204ENST00000392003 RHAGQ02094 409 aa9.25□□□□□ -0.93
COL6A3-204ENST00000392003 ZNF763Q0D2J5 394 aa9.25□□□□□ -0.93
COL6A3-204ENST00000392003 NFATC3Q12968 1075 aa9.25□□□□□ -0.93
COL6A3-204ENST00000392003 RAPSNQ13702 412 aa9.25□□□□□ -0.93
COL6A3-204ENST00000392003 CAMK1Q14012 370 aa9.25□□□□□ -0.93
COL6A3-204ENST00000392003 CTU2Q2VPK5 515 aaKnown RBP9.25□□□□□ -0.93
COL6A3-204ENST00000392003 ZNF480Q8WV37 535 aa9.25□□□□□ -0.93
COL6A3-204ENST00000392003 RORBQ92753 470 aa9.25□□□□□ -0.93
COL6A3-204ENST00000392003 BORCS5Q969J3 196 aa9.25□□□□□ -0.93
COL6A3-204ENST00000392003 ZNF707Q96C28 371 aaPredicted RBP9.25□□□□□ -0.93
COL6A3-204ENST00000392003 PPCDCQ96CD2 204 aa9.25□□□□□ -0.93
COL6A3-204ENST00000392003 ZNF717Q9BY31 904 aaPredicted RBP9.25□□□□□ -0.93
COL6A3-204ENST00000392003 GABARAPL1Q9H0R8 117 aa9.25□□□□□ -0.93
COL6A3-204ENST00000392003 RAD21L1Q9H4I0 556 aa9.25□□□□□ -0.93
COL6A3-204ENST00000392003 REEP4Q9H6H4 257 aa9.25□□□□□ -0.93
COL6A3-204ENST00000392003 VNN3Q9NY84 501 aa9.25□□□□□ -0.93
COL6A3-204ENST00000392003 MSRAQ9UJ68 235 aa9.25□□□□□ -0.93
COL6A3-204ENST00000392003 AP1M2Q9Y6Q5 423 aa9.25□□□□□ -0.93
COL6A3-204ENST00000392003 HELZP42694 1942 aaKnown RBP9.25□□□□□ -0.93
COL6A3-204ENST00000392003 NUP214P35658 2090 aaPredicted RBP9.25□□□□□ -0.93
COL6A3-204ENST00000392003 HEPACAM2A8MVW5 462 aa9.25□□□□□ -0.93
COL6A3-204ENST00000392003 IDSP22304 550 aa9.25□□□□□ -0.93
COL6A3-204ENST00000392003 AQP1P29972 269 aa9.25□□□□□ -0.93
COL6A3-204ENST00000392003 VASPP50552 380 aaPredicted RBP9.25□□□□□ -0.93
COL6A3-204ENST00000392003 ARHGDIBP52566 201 aa9.25□□□□□ -0.93
COL6A3-204ENST00000392003 GPR85P60893 370 aa9.25□□□□□ -0.93
COL6A3-204ENST00000392003 RACK1P63244 317 aaKnown RBP9.25□□□□□ -0.93
COL6A3-204ENST00000392003 CTBSQ01459 385 aa9.25□□□□□ -0.93
COL6A3-204ENST00000392003 PCDH1Q08174 1060 aa9.25□□□□□ -0.93
COL6A3-204ENST00000392003 C2orf80Q0P641 193 aa9.25□□□□□ -0.93
COL6A3-204ENST00000392003 CAMK2GQ13555 558 aaPredicted RBP9.25□□□□□ -0.93
COL6A3-204ENST00000392003 FAM78AQ5JUQ0 283 aa9.25□□□□□ -0.93
COL6A3-204ENST00000392003 CRTC3Q6UUV7 619 aa9.25□□□□□ -0.93
COL6A3-204ENST00000392003 ZNF551Q7Z340 670 aaPredicted RBP9.25□□□□□ -0.93
COL6A3-204ENST00000392003 HEATR4Q86WZ0 1026 aa9.25□□□□□ -0.93
COL6A3-204ENST00000392003 PTOV1Q86YD1 416 aa9.25□□□□□ -0.93
COL6A3-204ENST00000392003 FBXO15Q8NCQ5 510 aaPredicted RBP9.25□□□□□ -0.93
COL6A3-204ENST00000392003 CNIH3Q8TBE1 160 aa9.25□□□□□ -0.93
COL6A3-204ENST00000392003 FGF13Q92913 245 aa9.25□□□□□ -0.93
COL6A3-204ENST00000392003 SAMD11Q96NU1 681 aa9.25□□□□□ -0.93
COL6A3-204ENST00000392003 BHLHE41Q9C0J9 482 aaPredicted RBP9.25□□□□□ -0.93
COL6A3-204ENST00000392003 EDDM13A0A1B0GTR0 161 aa9.24□□□□□ -0.93
COL6A3-204ENST00000392003 ZNF99A8MXY4 864 aaPredicted RBP9.24□□□□□ -0.93
COL6A3-204ENST00000392003 RNASET2O00584 256 aaKnown RBP9.24□□□□□ -0.93
COL6A3-204ENST00000392003 PI15O43692 258 aa9.24□□□□□ -0.93
COL6A3-204ENST00000392003 FAM20BO75063 409 aa9.24□□□□□ -0.93
COL6A3-204ENST00000392003 POP7O75817 140 aaKnown RBP9.24□□□□□ -0.93
COL6A3-204ENST00000392003 TGFB1P01137 390 aa9.24□□□□□ -0.93
COL6A3-204ENST00000392003 C9P02748 559 aa9.24□□□□□ -0.93
COL6A3-204ENST00000392003 ATF4P18848 351 aaPredicted RBP9.24□□□□□ -0.93
COL6A3-204ENST00000392003 CHI3L1P36222 383 aaPredicted RBP9.24□□□□□ -0.93
COL6A3-204ENST00000392003 SLC6A11P48066 632 aa9.24□□□□□ -0.93
COL6A3-204ENST00000392003 DAPP51397 102 aa9.24□□□□□ -0.93
COL6A3-204ENST00000392003 PLA2G16P53816 162 aa9.24□□□□□ -0.93
COL6A3-204ENST00000392003 VLDLRP98155 873 aa9.24□□□□□ -0.93
COL6A3-204ENST00000392003 OCA2Q04671 838 aa9.24□□□□□ -0.93
COL6A3-204ENST00000392003 PIGFQ07326 219 aa9.24□□□□□ -0.93
COL6A3-204ENST00000392003 BNIP3Q12983 259 aa9.24□□□□□ -0.93
COL6A3-204ENST00000392003 KEAP1Q14145 624 aa9.24□□□□□ -0.93
COL6A3-204ENST00000392003 RGNQ15493 299 aa9.24□□□□□ -0.93
COL6A3-204ENST00000392003 BCL7AQ4VC05 210 aa9.24□□□□□ -0.93
COL6A3-204ENST00000392003 PRSS36Q5K4E3 855 aa9.24□□□□□ -0.93
COL6A3-204ENST00000392003 NUDT18Q6ZVK8 323 aa9.24□□□□□ -0.93
COL6A3-204ENST00000392003 CEP68Q76N32 757 aa9.24□□□□□ -0.93
COL6A3-204ENST00000392003 CYP4Z1Q86W10 505 aa9.24□□□□□ -0.93
COL6A3-204ENST00000392003 SYNPOQ8N3V7 929 aa9.24□□□□□ -0.93
COL6A3-204ENST00000392003 SVOPQ8N4V2 548 aa9.24□□□□□ -0.93
COL6A3-204ENST00000392003 COQ10AQ96MF6 247 aa9.24□□□□□ -0.93
COL6A3-204ENST00000392003 SFXN1Q9H9B4 322 aa9.24□□□□□ -0.93
COL6A3-204ENST00000392003 CCNB1IP1Q9NPC3 277 aa9.24□□□□□ -0.93
COL6A3-204ENST00000392003 ZDHHC4Q9NPG8 344 aa9.24□□□□□ -0.93
COL6A3-204ENST00000392003 THUMPD1Q9NXG2 353 aaKnown RBP9.24□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms