RNA–Protein interactions for RNA: ENST00000373602.9

CCDC28B-201, Transcript of coiled-coil domain containing 28B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28B, Length 1,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-201ENST00000373602 ST13P50502 369 aaKnown RBP20.31■□□□□ 0.84
CCDC28B-201ENST00000373602 HSD17B7P56937 341 aa20.31■□□□□ 0.84
CCDC28B-201ENST00000373602 KCNK10P57789 538 aa20.31■□□□□ 0.84
CCDC28B-201ENST00000373602 PCDH1Q08174 1060 aa20.31■□□□□ 0.84
CCDC28B-201ENST00000373602 HIST2H2ACQ16777 129 aaPredicted RBP20.31■□□□□ 0.84
CCDC28B-201ENST00000373602 HIST2H2AA3Q6FI13 130 aa20.31■□□□□ 0.84
CCDC28B-201ENST00000373602 MAMDC2Q7Z304 686 aaPredicted RBP20.31■□□□□ 0.84
CCDC28B-201ENST00000373602 CENPLQ8N0S6 344 aaPredicted RBP20.31■□□□□ 0.84
CCDC28B-201ENST00000373602 NXNL1Q96CM4 212 aa20.31■□□□□ 0.84
CCDC28B-201ENST00000373602 SCMH1Q96GD3 660 aa20.31■□□□□ 0.84
CCDC28B-201ENST00000373602 SERINC2Q96SA4 455 aa20.31■□□□□ 0.84
CCDC28B-201ENST00000373602 PRTFDC1Q9NRG1 225 aa20.31■□□□□ 0.84
CCDC28B-201ENST00000373602 CLDN16Q9Y5I7 305 aa20.31■□□□□ 0.84
CCDC28B-201ENST00000373602 A0A087X1B8 175 aa20.3■□□□□ 0.84
CCDC28B-201ENST00000373602 HMX2A2RU54 273 aa20.3■□□□□ 0.84
CCDC28B-201ENST00000373602 A8MUA0 341 aa20.3■□□□□ 0.84
CCDC28B-201ENST00000373602 C2P06681 752 aa20.3■□□□□ 0.84
CCDC28B-201ENST00000373602 CD46P15529 392 aa20.3■□□□□ 0.84
CCDC28B-201ENST00000373602 MTTPP55157 894 aa20.3■□□□□ 0.84
CCDC28B-201ENST00000373602 PER3P56645 1201 aa20.3■□□□□ 0.84
CCDC28B-201ENST00000373602 PMP22Q01453 160 aa20.3■□□□□ 0.84
CCDC28B-201ENST00000373602 SRSF11Q05519 484 aaKnown RBP20.3■□□□□ 0.84
CCDC28B-201ENST00000373602 TGM3Q08188 693 aa20.3■□□□□ 0.84
CCDC28B-201ENST00000373602 BMPR2Q13873 1038 aa20.3■□□□□ 0.84
CCDC28B-201ENST00000373602 TERF2Q15554 542 aa20.3■□□□□ 0.84
CCDC28B-201ENST00000373602 MROH9Q5TGP6 573 aa20.3■□□□□ 0.84
CCDC28B-201ENST00000373602 SPINK14Q6IE38 97 aa20.3■□□□□ 0.84
CCDC28B-201ENST00000373602 GFRALQ6UXV0 394 aa20.3■□□□□ 0.84
CCDC28B-201ENST00000373602 TMEM52Q8NDY8 209 aa20.3■□□□□ 0.84
CCDC28B-201ENST00000373602 RHEBL1Q8TAI7 183 aa20.3■□□□□ 0.84
CCDC28B-201ENST00000373602 KCTD4Q8WVF5 259 aa20.3■□□□□ 0.84
CCDC28B-201ENST00000373602 HES7Q9BYE0 225 aa20.3■□□□□ 0.84
CCDC28B-201ENST00000373602 PRDM7Q9NQW5 492 aa20.3■□□□□ 0.84
CCDC28B-201ENST00000373602 DAPP1Q9UN19 280 aa20.3■□□□□ 0.84
CCDC28B-201ENST00000373602 A0A1B0GUH1 482 aa20.29■□□□□ 0.84
CCDC28B-201ENST00000373602 CCDC189A1A4V9 331 aa20.29■□□□□ 0.84
CCDC28B-201ENST00000373602 TGFBR3LH3BV60 316 aa20.29■□□□□ 0.84
CCDC28B-201ENST00000373602 K7EPI3 171 aa20.29■□□□□ 0.84
CCDC28B-201ENST00000373602 CLDN4O14493 209 aa20.29■□□□□ 0.84
CCDC28B-201ENST00000373602 NEURL1O76050 574 aa20.29■□□□□ 0.84
CCDC28B-201ENST00000373602 MTHFD2P13995 350 aa20.29■□□□□ 0.84
CCDC28B-201ENST00000373602 CERS1P27544 350 aa20.29■□□□□ 0.84
CCDC28B-201ENST00000373602 MSH2P43246 934 aa20.29■□□□□ 0.84
CCDC28B-201ENST00000373602 HNRNPFP52597 415 aaKnown RBP20.29■□□□□ 0.84
CCDC28B-201ENST00000373602 LIM2P55344 173 aa20.29■□□□□ 0.84
CCDC28B-201ENST00000373602 MLF1P58340 268 aa20.29■□□□□ 0.84
CCDC28B-201ENST00000373602 IRF9Q00978 393 aa20.29■□□□□ 0.84
CCDC28B-201ENST00000373602 OC90Q02509 493 aaPredicted RBP20.29■□□□□ 0.84
CCDC28B-201ENST00000373602 RELL1Q8IUW5 271 aa20.29■□□□□ 0.84
CCDC28B-201ENST00000373602 ZNF595Q8IYB9 648 aa20.29■□□□□ 0.84
CCDC28B-201ENST00000373602 LAS2Q8IYD9 372 aa20.29■□□□□ 0.84
CCDC28B-201ENST00000373602 ARMC10Q8N2F6 343 aa20.29■□□□□ 0.84
CCDC28B-201ENST00000373602 MMGT1Q8N4V1 131 aa20.29■□□□□ 0.84
CCDC28B-201ENST00000373602 HORMAD2Q8N7B1 307 aa20.29■□□□□ 0.84
CCDC28B-201ENST00000373602 APCDD1LQ8NCL9 501 aa20.29■□□□□ 0.84
CCDC28B-201ENST00000373602 B3GNT7Q8NFL0 401 aa20.29■□□□□ 0.84
CCDC28B-201ENST00000373602 ZNF473Q8WTR7 871 aaKnown RBP20.29■□□□□ 0.84
CCDC28B-201ENST00000373602 UBE2E3Q969T4 207 aa20.29■□□□□ 0.84
CCDC28B-201ENST00000373602 MRRFQ96E11 262 aaKnown RBP20.29■□□□□ 0.84
CCDC28B-201ENST00000373602 F2RL3Q96RI0 385 aa20.29■□□□□ 0.84
CCDC28B-201ENST00000373602 MS4A8Q9BY19 250 aa20.29■□□□□ 0.84
CCDC28B-201ENST00000373602 COPS7BQ9H9Q2 264 aaPredicted RBP20.29■□□□□ 0.84
CCDC28B-201ENST00000373602 KLHL1Q9NR64 748 aa20.29■□□□□ 0.84
CCDC28B-201ENST00000373602 NINJ2Q9NZG7 142 aa20.29■□□□□ 0.84
CCDC28B-201ENST00000373602 OPTCQ9UBM4 332 aa20.29■□□□□ 0.84
CCDC28B-201ENST00000373602 PPIEQ9UNP9 301 aaKnown RBP20.29■□□□□ 0.84
CCDC28B-201ENST00000373602 MRPS33Q9Y291 106 aaKnown RBP20.29■□□□□ 0.84
CCDC28B-201ENST00000373602 SYCE1LA8MT33 242 aa20.28■□□□□ 0.84
CCDC28B-201ENST00000373602 CYR61O00622 381 aa20.28■□□□□ 0.84
CCDC28B-201ENST00000373602 UNC5CO95185 931 aa20.28■□□□□ 0.84
CCDC28B-201ENST00000373602 TPP2P29144 1249 aaPredicted RBP20.28■□□□□ 0.84
CCDC28B-201ENST00000373602 EEF1DP29692 281 aaKnown RBP20.28■□□□□ 0.84
CCDC28B-201ENST00000373602 PHBP35232 272 aa20.28■□□□□ 0.84
CCDC28B-201ENST00000373602 RCN2Q14257 317 aa20.28■□□□□ 0.84
CCDC28B-201ENST00000373602 FAM83EQ2M2I3 478 aa20.28■□□□□ 0.84
CCDC28B-201ENST00000373602 ZNF468Q5VIY5 522 aaPredicted RBP20.28■□□□□ 0.84
CCDC28B-201ENST00000373602 SLC25A25Q6KCM7 469 aa20.28■□□□□ 0.84
CCDC28B-201ENST00000373602 MED27Q6P2C8 311 aa20.28■□□□□ 0.84
CCDC28B-201ENST00000373602 CEP128Q6ZU80 1094 aa20.28■□□□□ 0.84
CCDC28B-201ENST00000373602 UBE3DQ7Z6J8 389 aa20.28■□□□□ 0.84
CCDC28B-201ENST00000373602 FAM47BQ8NA70 645 aa20.28■□□□□ 0.84
CCDC28B-201ENST00000373602 TMEM178AQ8NBL3 297 aa20.28■□□□□ 0.84
CCDC28B-201ENST00000373602 SRFBP1Q8NEF9 429 aaKnown RBP20.28■□□□□ 0.84
CCDC28B-201ENST00000373602 RELTQ969Z4 430 aa20.28■□□□□ 0.84
CCDC28B-201ENST00000373602 DEFB126Q9BYW3 111 aa20.28■□□□□ 0.84
CCDC28B-201ENST00000373602 ROGDIQ9GZN7 287 aa20.28■□□□□ 0.84
CCDC28B-201ENST00000373602 ACSS3Q9H6R3 686 aa20.28■□□□□ 0.84
CCDC28B-201ENST00000373602 TRIM45Q9H8W5 580 aaPredicted RBP20.28■□□□□ 0.84
CCDC28B-201ENST00000373602 SNX15Q9NRS6 342 aa20.28■□□□□ 0.84
CCDC28B-201ENST00000373602 LRFN1Q9P244 771 aa20.28■□□□□ 0.84
CCDC28B-201ENST00000373602 SEC14L3Q9UDX4 400 aa20.28■□□□□ 0.84
CCDC28B-201ENST00000373602 MTRF1LQ9UGC7 380 aaKnown RBP20.28■□□□□ 0.84
CCDC28B-201ENST00000373602 ASPDHA6ND91 283 aa20.27■□□□□ 0.84
CCDC28B-201ENST00000373602 MYO1DO94832 1006 aa20.27■□□□□ 0.84
CCDC28B-201ENST00000373602 SP1P08047 785 aa20.27■□□□□ 0.84
CCDC28B-201ENST00000373602 TRHRP34981 398 aaPredicted RBP20.27■□□□□ 0.84
CCDC28B-201ENST00000373602 CLCN2P51788 898 aa20.27■□□□□ 0.84
CCDC28B-201ENST00000373602 SLC13A2Q13183 592 aa20.27■□□□□ 0.84
CCDC28B-201ENST00000373602 ACAP2Q15057 778 aa20.27■□□□□ 0.84
CCDC28B-201ENST00000373602 UAP1Q16222 522 aaPredicted RBP20.27■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms