RNA–Protein interactions for RNA: ENST00000370573.8

MCF2-202, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MCF2, Length 2,583 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-202ENST00000370573 STX16O14662 325 aa3.42□□□□□ -1.86
MCF2-202ENST00000370573 EDF1O60869 148 aaKnown RBP3.42□□□□□ -1.86
MCF2-202ENST00000370573 C1orf105O95561 183 aa3.42□□□□□ -1.86
MCF2-202ENST00000370573 TNFP01375 233 aa3.42□□□□□ -1.86
MCF2-202ENST00000370573 CHRNGP07510 517 aa3.42□□□□□ -1.86
MCF2-202ENST00000370573 SP9P0CG40 484 aa3.42□□□□□ -1.86
MCF2-202ENST00000370573 GFAPP14136 432 aa3.42□□□□□ -1.86
MCF2-202ENST00000370573 KELP23276 732 aa3.42□□□□□ -1.86
MCF2-202ENST00000370573 APEX1P27695 318 aaKnown RBP3.42□□□□□ -1.86
MCF2-202ENST00000370573 EEF1DP29692 281 aaKnown RBP3.42□□□□□ -1.86
MCF2-202ENST00000370573 GDF5P43026 501 aa3.42□□□□□ -1.86
MCF2-202ENST00000370573 SLC1A6P48664 564 aa3.42□□□□□ -1.86
MCF2-202ENST00000370573 DHPSP49366 369 aaPredicted RBP3.42□□□□□ -1.86
MCF2-202ENST00000370573 CLCNKAP51800 687 aa3.42□□□□□ -1.86
MCF2-202ENST00000370573 ALDH18A1P54886 795 aaKnown RBP3.42□□□□□ -1.86
MCF2-202ENST00000370573 CDH13P55290 713 aa3.42□□□□□ -1.86
MCF2-202ENST00000370573 ABCE1P61221 599 aaKnown RBP3.42□□□□□ -1.86
MCF2-202ENST00000370573 CD83Q01151 205 aa3.42□□□□□ -1.86
MCF2-202ENST00000370573 PLOD1Q02809 727 aaPredicted RBP3.42□□□□□ -1.86
MCF2-202ENST00000370573 OVGP1Q12889 678 aa3.42□□□□□ -1.86
MCF2-202ENST00000370573 RPA4Q13156 261 aa3.42□□□□□ -1.86
MCF2-202ENST00000370573 C1orf61Q13536 156 aa3.42□□□□□ -1.86
MCF2-202ENST00000370573 RCN2Q14257 317 aa3.42□□□□□ -1.86
MCF2-202ENST00000370573 ARL13AQ5H913 290 aaPredicted RBP3.42□□□□□ -1.86
MCF2-202ENST00000370573 ATG16L1Q676U5 607 aa3.42□□□□□ -1.86
MCF2-202ENST00000370573 PMS2CLQ68D20 193 aa3.42□□□□□ -1.86
MCF2-202ENST00000370573 SULT1C3Q6IMI6 304 aa3.42□□□□□ -1.86
MCF2-202ENST00000370573 DUS1LQ6P1R4 473 aaKnown RBP3.42□□□□□ -1.86
MCF2-202ENST00000370573 LPCAT2Q7L5N7 544 aa3.42□□□□□ -1.86
MCF2-202ENST00000370573 SLC22A9Q8IVM8 553 aa3.42□□□□□ -1.86
MCF2-202ENST00000370573 SFTPA2Q8IWL1 248 aa3.42□□□□□ -1.86
MCF2-202ENST00000370573 PQLC1Q8N2U9 271 aa3.42□□□□□ -1.86
MCF2-202ENST00000370573 FBXO39Q8N4B4 442 aa3.42□□□□□ -1.86
MCF2-202ENST00000370573 PDPRQ8NCN5 879 aa3.42□□□□□ -1.86
MCF2-202ENST00000370573 PIK3C3Q8NEB9 887 aa3.42□□□□□ -1.86
MCF2-202ENST00000370573 OR5AR1Q8NGP9 310 aa3.42□□□□□ -1.86
MCF2-202ENST00000370573 RAB3IL1Q8TBN0 382 aa3.42□□□□□ -1.86
MCF2-202ENST00000370573 ZNF483Q8TF39 744 aaPredicted RBP3.42□□□□□ -1.86
MCF2-202ENST00000370573 SNX33Q8WV41 574 aa3.42□□□□□ -1.86
MCF2-202ENST00000370573 ST8SIA4Q92187 359 aa3.42□□□□□ -1.86
MCF2-202ENST00000370573 THOC1Q96FV9 657 aaKnown RBP3.42□□□□□ -1.86
MCF2-202ENST00000370573 CNDP1Q96KN2 507 aa3.42□□□□□ -1.86
MCF2-202ENST00000370573 TMEM79Q9BSE2 394 aa3.42□□□□□ -1.86
MCF2-202ENST00000370573 C1QTNF3Q9BXJ4 246 aa3.42□□□□□ -1.86
MCF2-202ENST00000370573 SHCBP1LQ9BZQ2 653 aa3.42□□□□□ -1.86
MCF2-202ENST00000370573 DRC3Q9H069 523 aa3.42□□□□□ -1.86
MCF2-202ENST00000370573 DPEP2Q9H4A9 486 aa3.42□□□□□ -1.86
MCF2-202ENST00000370573 ZBTB26Q9HCK0 441 aa3.42□□□□□ -1.86
MCF2-202ENST00000370573 SLAMF7Q9NQ25 335 aa3.42□□□□□ -1.86
MCF2-202ENST00000370573 TMEM74BQ9NUR3 256 aa3.42□□□□□ -1.86
MCF2-202ENST00000370573 THAP1Q9NVV9 213 aa3.42□□□□□ -1.86
MCF2-202ENST00000370573 ZKSCAN7Q9P0L1 754 aaPredicted RBP3.42□□□□□ -1.86
MCF2-202ENST00000370573 TRPS1Q9UHF7 1281 aa3.42□□□□□ -1.86
MCF2-202ENST00000370573 MID2Q9UJV3 735 aa3.42□□□□□ -1.86
MCF2-202ENST00000370573 FBXO4Q9UKT5 387 aa3.42□□□□□ -1.86
MCF2-202ENST00000370573 ACSL5Q9ULC5 683 aa3.42□□□□□ -1.86
MCF2-202ENST00000370573 SPAG17Q6Q759 2223 aa3.42□□□□□ -1.86
MCF2-202ENST00000370573 ARHGEF17Q96PE2 2063 aaPredicted RBP3.41□□□□□ -1.86
MCF2-202ENST00000370573 A0A1B0GVT2 93 aa3.41□□□□□ -1.86
MCF2-202ENST00000370573 OR52A4PA6NMU1 304 aa3.41□□□□□ -1.86
MCF2-202ENST00000370573 TMEM114B3SHH9 223 aa3.41□□□□□ -1.86
MCF2-202ENST00000370573 ZNF195O14628 629 aa3.41□□□□□ -1.86
MCF2-202ENST00000370573 VILLO15195 856 aa3.41□□□□□ -1.86
MCF2-202ENST00000370573 PRAMEF4O60810 478 aa3.41□□□□□ -1.86
MCF2-202ENST00000370573 KCNJ13O60928 360 aa3.41□□□□□ -1.86
MCF2-202ENST00000370573 SUPT7LO94864 414 aa3.41□□□□□ -1.86
MCF2-202ENST00000370573 IL18BPO95998 194 aa3.41□□□□□ -1.86
MCF2-202ENST00000370573 RPS17P08708 135 aaKnown RBP3.41□□□□□ -1.86
MCF2-202ENST00000370573 ENO2P09104 434 aaPredicted RBP3.41□□□□□ -1.86
MCF2-202ENST00000370573 VCLP18206 1134 aa3.41□□□□□ -1.86
MCF2-202ENST00000370573 EPORP19235 508 aa3.41□□□□□ -1.86
MCF2-202ENST00000370573 CYP2A7P20853 494 aa3.41□□□□□ -1.86
MCF2-202ENST00000370573 IDSP22304 550 aa3.41□□□□□ -1.86
MCF2-202ENST00000370573 GGT5P36269 586 aa3.41□□□□□ -1.86
MCF2-202ENST00000370573 SLC6A12P48065 614 aa3.41□□□□□ -1.86
MCF2-202ENST00000370573 NXPH1P58417 271 aa3.41□□□□□ -1.86
MCF2-202ENST00000370573 HERVK_113P63132 956 aa3.41□□□□□ -1.86
MCF2-202ENST00000370573 CDKL1Q00532 357 aa3.41□□□□□ -1.86
MCF2-202ENST00000370573 SP140Q13342 867 aa3.41□□□□□ -1.86
MCF2-202ENST00000370573 EFR3AQ14156 821 aa3.41□□□□□ -1.86
MCF2-202ENST00000370573 ERV3-1Q14264 604 aa3.41□□□□□ -1.86
MCF2-202ENST00000370573 RPE65Q16518 533 aa3.41□□□□□ -1.86
MCF2-202ENST00000370573 CDKL4Q5MAI5 379 aa3.41□□□□□ -1.86
MCF2-202ENST00000370573 KLHL17Q6TDP4 642 aa3.41□□□□□ -1.86
MCF2-202ENST00000370573 ABRAXAS1Q6UWZ7 409 aa3.41□□□□□ -1.86
MCF2-202ENST00000370573 UNC5DQ6UXZ4 953 aa3.41□□□□□ -1.86
MCF2-202ENST00000370573 WASH2PQ6VEQ5 465 aa3.41□□□□□ -1.86
MCF2-202ENST00000370573 FRA10AC1Q70Z53 315 aa3.41□□□□□ -1.86
MCF2-202ENST00000370573 PIGWQ7Z7B1 504 aa3.41□□□□□ -1.86
MCF2-202ENST00000370573 IQCHQ86VS3 1027 aa3.41□□□□□ -1.86
MCF2-202ENST00000370573 RFWD2Q8NHY2 731 aa3.41□□□□□ -1.86
MCF2-202ENST00000370573 MCOLN3Q8TDD5 553 aa3.41□□□□□ -1.86
MCF2-202ENST00000370573 UBTD2Q8WUN7 234 aa3.41□□□□□ -1.86
MCF2-202ENST00000370573 TFGQ92734 400 aaPredicted RBP3.41□□□□□ -1.86
MCF2-202ENST00000370573 ITFG2Q969R8 447 aa3.41□□□□□ -1.86
MCF2-202ENST00000370573 FBXL8Q96CD0 374 aa3.41□□□□□ -1.86
MCF2-202ENST00000370573 CCDC126Q96EE4 140 aa3.41□□□□□ -1.86
MCF2-202ENST00000370573 C7orf26Q96N11 449 aa3.41□□□□□ -1.86
MCF2-202ENST00000370573 PRPF18Q99633 342 aaKnown RBP3.41□□□□□ -1.86
MCF2-202ENST00000370573 ERVK-6Q9BXR3 956 aa3.41□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms