RNA–Protein interactions for RNA: ENST00000355477.10

CLN3-202, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,173 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-202ENST00000355477 MAGEA12P43365 314 aa17.23■□□□□ 0.35
CLN3-202ENST00000355477 SETDB1Q15047 1291 aa17.23■□□□□ 0.35
CLN3-202ENST00000355477 TRIM40Q6P9F5 258 aa17.23■□□□□ 0.35
CLN3-202ENST00000355477 BEST3Q8N1M1 668 aa17.23■□□□□ 0.35
CLN3-202ENST00000355477 ELP5Q8TE02 316 aa17.23■□□□□ 0.35
CLN3-202ENST00000355477 ZNF473Q8WTR7 871 aaKnown RBP17.23■□□□□ 0.35
CLN3-202ENST00000355477 DCAKDQ8WVC6 231 aa17.23■□□□□ 0.35
CLN3-202ENST00000355477 FAR1Q8WVX9 515 aa17.23■□□□□ 0.35
CLN3-202ENST00000355477 ISL2Q96A47 359 aa17.23■□□□□ 0.35
CLN3-202ENST00000355477 ZNF354BQ96LW1 612 aa17.23■□□□□ 0.35
CLN3-202ENST00000355477 TAAR6Q96RI8 345 aa17.23■□□□□ 0.35
CLN3-202ENST00000355477 MS4A8Q9BY19 250 aa17.23■□□□□ 0.35
CLN3-202ENST00000355477 TEKT2Q9UIF3 430 aa17.23■□□□□ 0.35
CLN3-202ENST00000355477 CLDN16Q9Y5I7 305 aa17.23■□□□□ 0.35
CLN3-202ENST00000355477 CCDC189A1A4V9 331 aa17.22■□□□□ 0.35
CLN3-202ENST00000355477 BLACEA4D250 179 aa17.22■□□□□ 0.35
CLN3-202ENST00000355477 OR5H15A6NDH6 313 aa17.22■□□□□ 0.35
CLN3-202ENST00000355477 A8MUA0 341 aa17.22■□□□□ 0.35
CLN3-202ENST00000355477 POC1B-GALNT4F8VUJ3 575 aa17.22■□□□□ 0.35
CLN3-202ENST00000355477 TGFBR3LH3BV60 316 aa17.22■□□□□ 0.35
CLN3-202ENST00000355477 E2F3O00716 465 aa17.22■□□□□ 0.35
CLN3-202ENST00000355477 SH3BGRLO75368 114 aa17.22■□□□□ 0.35
CLN3-202ENST00000355477 AGFG2O95081 481 aa17.22■□□□□ 0.35
CLN3-202ENST00000355477 RNF224P0DH78 156 aa17.22■□□□□ 0.35
CLN3-202ENST00000355477 GFAPP14136 432 aa17.22■□□□□ 0.35
CLN3-202ENST00000355477 EPB42P16452 691 aa17.22■□□□□ 0.35
CLN3-202ENST00000355477 ALDH18A1P54886 795 aaKnown RBP17.22■□□□□ 0.35
CLN3-202ENST00000355477 RAB38P57729 211 aa17.22■□□□□ 0.35
CLN3-202ENST00000355477 NAA30Q147X3 362 aaPredicted RBP17.22■□□□□ 0.35
CLN3-202ENST00000355477 TECRLQ5HYJ1 363 aa17.22■□□□□ 0.35
CLN3-202ENST00000355477 LAS2Q8IYD9 372 aa17.22■□□□□ 0.35
CLN3-202ENST00000355477 RNF175Q8N4F7 328 aa17.22■□□□□ 0.35
CLN3-202ENST00000355477 CEP112Q8N8E3 955 aa17.22■□□□□ 0.35
CLN3-202ENST00000355477 NFAM1Q8NET5 270 aaPredicted RBP17.22■□□□□ 0.35
CLN3-202ENST00000355477 OR7G3Q8NG95 312 aa17.22■□□□□ 0.35
CLN3-202ENST00000355477 PSMG3-AS1Q96PY0 264 aa17.22■□□□□ 0.35
CLN3-202ENST00000355477 SERINC2Q96SA4 455 aa17.22■□□□□ 0.35
CLN3-202ENST00000355477 CPSF2Q9P2I0 782 aaKnown RBP17.22■□□□□ 0.35
CLN3-202ENST00000355477 MMACHCQ9Y4U1 282 aa17.22■□□□□ 0.35
CLN3-202ENST00000355477 NBPF19A0A087WUL8 3843 aa17.22■□□□□ 0.35
CLN3-202ENST00000355477 CYR61O00622 381 aa17.21■□□□□ 0.35
CLN3-202ENST00000355477 SIX3O95343 332 aaPredicted RBP17.21■□□□□ 0.35
CLN3-202ENST00000355477 TGFB1P01137 390 aa17.21■□□□□ 0.35
CLN3-202ENST00000355477 PCNAP12004 261 aa17.21■□□□□ 0.35
CLN3-202ENST00000355477 HPDP32754 393 aaPredicted RBP17.21■□□□□ 0.35
CLN3-202ENST00000355477 SERPINB9P50453 376 aa17.21■□□□□ 0.35
CLN3-202ENST00000355477 MTTPP55157 894 aa17.21■□□□□ 0.35
CLN3-202ENST00000355477 LIM2P55344 173 aa17.21■□□□□ 0.35
CLN3-202ENST00000355477 MEP1AQ16819 746 aa17.21■□□□□ 0.35
CLN3-202ENST00000355477 GRHL2Q6ISB3 625 aa17.21■□□□□ 0.35
CLN3-202ENST00000355477 MED27Q6P2C8 311 aa17.21■□□□□ 0.35
CLN3-202ENST00000355477 KLC3Q6P597 504 aa17.21■□□□□ 0.35
CLN3-202ENST00000355477 ZNF793Q6ZN11 406 aa17.21■□□□□ 0.35
CLN3-202ENST00000355477 SCUBE1Q8IWY4 988 aa17.21■□□□□ 0.35
CLN3-202ENST00000355477 FAM47BQ8NA70 645 aa17.21■□□□□ 0.35
CLN3-202ENST00000355477 CSF3RQ99062 836 aa17.21■□□□□ 0.35
CLN3-202ENST00000355477 PRTFDC1Q9NRG1 225 aa17.21■□□□□ 0.35
CLN3-202ENST00000355477 ANKRD10Q9NXR5 420 aa17.21■□□□□ 0.35
CLN3-202ENST00000355477 KCMF1Q9P0J7 381 aa17.21■□□□□ 0.35
CLN3-202ENST00000355477 DAPP1Q9UN19 280 aa17.21■□□□□ 0.35
CLN3-202ENST00000355477 IKBKGQ9Y6K9 419 aa17.21■□□□□ 0.35
CLN3-202ENST00000355477 A0A087WUV0 522 aaPredicted RBP17.2■□□□□ 0.34
CLN3-202ENST00000355477 A0A088AWK7 358 aa17.2■□□□□ 0.34
CLN3-202ENST00000355477 SAGE2PA6NJ88 616 aa17.2■□□□□ 0.34
CLN3-202ENST00000355477 RTCAO00442 366 aaKnown RBP17.2■□□□□ 0.34
CLN3-202ENST00000355477 PRAMEF2O60811 474 aa17.2■□□□□ 0.34
CLN3-202ENST00000355477 RHOXF2BP0C7M4 288 aa17.2■□□□□ 0.34
CLN3-202ENST00000355477 ZNF10P21506 573 aaPredicted RBP17.2■□□□□ 0.34
CLN3-202ENST00000355477 PPP2R1BP30154 601 aa17.2■□□□□ 0.34
CLN3-202ENST00000355477 CD96P40200 585 aa17.2■□□□□ 0.34
CLN3-202ENST00000355477 SRSF11Q05519 484 aaKnown RBP17.2■□□□□ 0.34
CLN3-202ENST00000355477 TUBA3CQ13748 450 aa17.2■□□□□ 0.34
CLN3-202ENST00000355477 GTF2H2Q13888 395 aa17.2■□□□□ 0.34
CLN3-202ENST00000355477 PCBP2Q15366 365 aaKnown RBP eCLIP17.2■□□□□ 0.34
CLN3-202ENST00000355477 ZNF324BQ6AW86 544 aaPredicted RBP17.2■□□□□ 0.34
CLN3-202ENST00000355477 GTF2H2CQ6P1K8 395 aa17.2■□□□□ 0.34
CLN3-202ENST00000355477 TUBA3EQ6PEY2 450 aa17.2■□□□□ 0.34
CLN3-202ENST00000355477 FAM180AQ6UWF9 173 aa17.2■□□□□ 0.34
CLN3-202ENST00000355477 IFT20Q8IY31 132 aa17.2■□□□□ 0.34
CLN3-202ENST00000355477 LRRN4CLQ8ND94 238 aa17.2■□□□□ 0.34
CLN3-202ENST00000355477 ST6GALNAC3Q8NDV1 305 aa17.2■□□□□ 0.34
CLN3-202ENST00000355477 ARMC2Q8NEN0 867 aa17.2■□□□□ 0.34
CLN3-202ENST00000355477 UBE2E3Q969T4 207 aa17.2■□□□□ 0.34
CLN3-202ENST00000355477 SIGLEC12Q96PQ1 595 aa17.2■□□□□ 0.34
CLN3-202ENST00000355477 KCNC2Q96PR1 638 aa17.2■□□□□ 0.34
CLN3-202ENST00000355477 RHOXF2Q9BQY4 288 aa17.2■□□□□ 0.34
CLN3-202ENST00000355477 CDCP1Q9H5V8 836 aa17.2■□□□□ 0.34
CLN3-202ENST00000355477 ZNF180Q9UJW8 692 aa17.2■□□□□ 0.34
CLN3-202ENST00000355477 ANGPTL3Q9Y5C1 460 aa17.2■□□□□ 0.34
CLN3-202ENST00000355477 TRIM49D1C9J1S8 452 aa17.19■□□□□ 0.34
CLN3-202ENST00000355477 SAP18O00422 153 aaKnown RBP17.19■□□□□ 0.34
CLN3-202ENST00000355477 KRT38O76015 456 aa17.19■□□□□ 0.34
CLN3-202ENST00000355477 FAM153BP0C7A2 387 aa17.19■□□□□ 0.34
CLN3-202ENST00000355477 EDN3P14138 238 aa17.19■□□□□ 0.34
CLN3-202ENST00000355477 ATP5A1P25705 553 aaKnown RBP17.19■□□□□ 0.34
CLN3-202ENST00000355477 GCAP28676 217 aa17.19■□□□□ 0.34
CLN3-202ENST00000355477 HSD17B7P56937 341 aa17.19■□□□□ 0.34
CLN3-202ENST00000355477 TGM3Q08188 693 aa17.19■□□□□ 0.34
CLN3-202ENST00000355477 SLC13A2Q13183 592 aa17.19■□□□□ 0.34
CLN3-202ENST00000355477 FAM153CQ494X1 144 aa17.19■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms