RNA–Protein interactions for RNA: ENST00000353317.9

TRIM55-204, Transcript of tripartite motif containing 55, humanhuman

TSL 1 (best) BASIC

Gene TRIM55, Length 2,624 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM55-204ENST00000353317 APH1BQ8WW43 257 aa8.24□□□□□ -1.09
TRIM55-204ENST00000353317 SELENOMQ8WWX9 145 aa8.24□□□□□ -1.09
TRIM55-204ENST00000353317 ZHX1-C8orf76Q96EF9 292 aa8.24□□□□□ -1.09
TRIM55-204ENST00000353317 C8orf33Q9H7E9 229 aaPredicted RBP8.24□□□□□ -1.09
TRIM55-204ENST00000353317 KRT84Q9NSB2 600 aa8.24□□□□□ -1.09
TRIM55-204ENST00000353317 ITGB1BP2Q9UKP3 347 aa8.24□□□□□ -1.09
TRIM55-204ENST00000353317 CA14Q9ULX7 337 aa8.24□□□□□ -1.09
TRIM55-204ENST00000353317 SAMHD1Q9Y3Z3 626 aaKnown RBP8.24□□□□□ -1.09
TRIM55-204ENST00000353317 SNRNP200O75643 2136 aaKnown RBP8.24□□□□□ -1.09
TRIM55-204ENST00000353317 CLDN24A6NM45 220 aa8.24□□□□□ -1.09
TRIM55-204ENST00000353317 H0Y8X5 98 aa8.24□□□□□ -1.09
TRIM55-204ENST00000353317 GFYI3L273 518 aa8.24□□□□□ -1.09
TRIM55-204ENST00000353317 NPC1O15118 1278 aa8.24□□□□□ -1.09
TRIM55-204ENST00000353317 SCAMP1O15126 338 aa8.24□□□□□ -1.09
TRIM55-204ENST00000353317 LATO43561 262 aa8.24□□□□□ -1.09
TRIM55-204ENST00000353317 NUAK1O60285 661 aa8.24□□□□□ -1.09
TRIM55-204ENST00000353317 PRAMEF4O60810 478 aa8.24□□□□□ -1.09
TRIM55-204ENST00000353317 KCNK5O95279 499 aa8.24□□□□□ -1.09
TRIM55-204ENST00000353317 KRT6AP02538 564 aa8.24□□□□□ -1.09
TRIM55-204ENST00000353317 KRT6BP04259 564 aa8.24□□□□□ -1.09
TRIM55-204ENST00000353317 CHRNB1P11230 501 aa8.24□□□□□ -1.09
TRIM55-204ENST00000353317 SRFP11831 508 aa8.24□□□□□ -1.09
TRIM55-204ENST00000353317 KRT6CP48668 564 aa8.24□□□□□ -1.09
TRIM55-204ENST00000353317 TPTEP56180 551 aa8.24□□□□□ -1.09
TRIM55-204ENST00000353317 RPP38P78345 283 aaKnown RBP8.24□□□□□ -1.09
TRIM55-204ENST00000353317 TDGQ13569 410 aa8.24□□□□□ -1.09
TRIM55-204ENST00000353317 NFE2L1Q14494 772 aa8.24□□□□□ -1.09
TRIM55-204ENST00000353317 TTLL9Q3SXZ7 439 aa8.24□□□□□ -1.09
TRIM55-204ENST00000353317 LEXMQ3ZCV2 418 aa8.24□□□□□ -1.09
TRIM55-204ENST00000353317 EEF1AKMT2Q5JPI9 291 aaKnown RBP8.24□□□□□ -1.09
TRIM55-204ENST00000353317 TPRG1LQ5T0D9 272 aa8.24□□□□□ -1.09
TRIM55-204ENST00000353317 C1QTNF12Q5T7M4 302 aa8.24□□□□□ -1.09
TRIM55-204ENST00000353317 PRAMEF9Q5VWM5 478 aa8.24□□□□□ -1.09
TRIM55-204ENST00000353317 LYSMD2Q8IV50 215 aa8.24□□□□□ -1.09
TRIM55-204ENST00000353317 ENTHD1Q8IYW4 607 aa8.24□□□□□ -1.09
TRIM55-204ENST00000353317 SCAIQ8N9R8 606 aa8.24□□□□□ -1.09
TRIM55-204ENST00000353317 ATG16L2Q8NAA4 619 aa8.24□□□□□ -1.09
TRIM55-204ENST00000353317 MCFD2Q8NI22 146 aa8.24□□□□□ -1.09
TRIM55-204ENST00000353317 GANCQ8TET4 914 aa8.24□□□□□ -1.09
TRIM55-204ENST00000353317 POP5Q969H6 163 aaKnown RBP8.24□□□□□ -1.09
TRIM55-204ENST00000353317 TESCQ96BS2 214 aa8.24□□□□□ -1.09
TRIM55-204ENST00000353317 APIPQ96GX9 242 aa8.24□□□□□ -1.09
TRIM55-204ENST00000353317 DACH2Q96NX9 599 aa8.24□□□□□ -1.09
TRIM55-204ENST00000353317 DPH2Q9BQC3 489 aaPredicted RBP8.24□□□□□ -1.09
TRIM55-204ENST00000353317 C1QTNF2Q9BXJ5 285 aa8.24□□□□□ -1.09
TRIM55-204ENST00000353317 DCSTAMPQ9H295 470 aa8.24□□□□□ -1.09
TRIM55-204ENST00000353317 TRIM39Q9HCM9 518 aa8.24□□□□□ -1.09
TRIM55-204ENST00000353317 CCNB1IP1Q9NPC3 277 aa8.24□□□□□ -1.09
TRIM55-204ENST00000353317 ABCB10Q9NRK6 738 aa8.24□□□□□ -1.09
TRIM55-204ENST00000353317 ZNF229Q9UJW7 825 aa8.24□□□□□ -1.09
TRIM55-204ENST00000353317 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP8.24□□□□□ -1.09
TRIM55-204ENST00000353317 RBMX2Q9Y388 322 aaKnown RBP8.24□□□□□ -1.09
TRIM55-204ENST00000353317 TSC22D4Q9Y3Q8 395 aa8.24□□□□□ -1.09
TRIM55-204ENST00000353317 POM121BA6NF01 834 aa8.23□□□□□ -1.09
TRIM55-204ENST00000353317 CLIC1O00299 241 aa8.23□□□□□ -1.09
TRIM55-204ENST00000353317 RNGTTO60942 597 aaKnown RBP8.23□□□□□ -1.09
TRIM55-204ENST00000353317 UPK1BO75841 260 aa8.23□□□□□ -1.09
TRIM55-204ENST00000353317 OXSR1O95747 527 aaPredicted RBP8.23□□□□□ -1.09
TRIM55-204ENST00000353317 DNTTP04053 509 aa8.23□□□□□ -1.09
TRIM55-204ENST00000353317 NTRK1P04629 796 aa8.23□□□□□ -1.09
TRIM55-204ENST00000353317 EFNA1P20827 205 aaPredicted RBP8.23□□□□□ -1.09
TRIM55-204ENST00000353317 C21orf33P30042 268 aaPredicted RBP8.23□□□□□ -1.09
TRIM55-204ENST00000353317 KDELR2P33947 212 aa8.23□□□□□ -1.09
TRIM55-204ENST00000353317 RPIAP49247 311 aa8.23□□□□□ -1.09
TRIM55-204ENST00000353317 MRPS21P82921 87 aaKnown RBP8.23□□□□□ -1.09
TRIM55-204ENST00000353317 CDK3Q00526 305 aa8.23□□□□□ -1.09
TRIM55-204ENST00000353317 NPRL3Q12980 569 aa8.23□□□□□ -1.09
TRIM55-204ENST00000353317 FADDQ13158 208 aa8.23□□□□□ -1.09
TRIM55-204ENST00000353317 VMACQ2NL98 169 aa8.23□□□□□ -1.09
TRIM55-204ENST00000353317 UBE2UQ5VVX9 321 aa8.23□□□□□ -1.09
TRIM55-204ENST00000353317 Q6ZPB1 254 aaPredicted RBP8.23□□□□□ -1.09
TRIM55-204ENST00000353317 NEK10Q6ZWH5 1172 aa8.23□□□□□ -1.09
TRIM55-204ENST00000353317 UBE2R2Q712K3 238 aaPredicted RBP8.23□□□□□ -1.09
TRIM55-204ENST00000353317 HORMAD1Q86X24 394 aa8.23□□□□□ -1.09
TRIM55-204ENST00000353317 ARMC8Q8IUR7 673 aa8.23□□□□□ -1.09
TRIM55-204ENST00000353317 SKA2Q8WVK7 121 aaPredicted RBP8.23□□□□□ -1.09
TRIM55-204ENST00000353317 HTRA1Q92743 480 aa8.23□□□□□ -1.09
TRIM55-204ENST00000353317 SIPA1Q96FS4 1042 aa8.23□□□□□ -1.09
TRIM55-204ENST00000353317 HSH2DQ96JZ2 352 aa8.23□□□□□ -1.09
TRIM55-204ENST00000353317 HHIPQ96QV1 700 aa8.23□□□□□ -1.09
TRIM55-204ENST00000353317 CCM2Q9BSQ5 444 aa8.23□□□□□ -1.09
TRIM55-204ENST00000353317 SLC29A3Q9BZD2 475 aa8.23□□□□□ -1.09
TRIM55-204ENST00000353317 RDH14Q9HBH5 336 aa8.23□□□□□ -1.09
TRIM55-204ENST00000353317 SLC2A4RGQ9NR83 387 aa8.23□□□□□ -1.09
TRIM55-204ENST00000353317 THUMPD1Q9NXG2 353 aaKnown RBP8.23□□□□□ -1.09
TRIM55-204ENST00000353317 KIF17Q9P2E2 1029 aa8.23□□□□□ -1.09
TRIM55-204ENST00000353317 POU2F3Q9UKI9 436 aa8.23□□□□□ -1.09
TRIM55-204ENST00000353317 PLEKHM1Q9Y4G2 1056 aa8.23□□□□□ -1.09
TRIM55-204ENST00000353317 SLCO1B1Q9Y6L6 691 aa8.23□□□□□ -1.09
TRIM55-204ENST00000353317 TBC1D3DA0A087WVF3 549 aa8.23□□□□□ -1.09
TRIM55-204ENST00000353317 TBC1D3IA0A087WXS9 549 aa8.23□□□□□ -1.09
TRIM55-204ENST00000353317 TBC1D3EA0A087X179 549 aa8.23□□□□□ -1.09
TRIM55-204ENST00000353317 TBC1D3KA0A087X1G2 549 aa8.23□□□□□ -1.09
TRIM55-204ENST00000353317 TCRBV21S2A2A0A5A6 115 aa8.23□□□□□ -1.09
TRIM55-204ENST00000353317 TBC1D3FA6NER0 549 aaPredicted RBP8.23□□□□□ -1.09
TRIM55-204ENST00000353317 TTC36A6NLP5 189 aa8.23□□□□□ -1.09
TRIM55-204ENST00000353317 A8MU76 341 aa8.23□□□□□ -1.09
TRIM55-204ENST00000353317 ARHGEF33A8MVX0 844 aa8.23□□□□□ -1.09
TRIM55-204ENST00000353317 EVPLLA8MZ36 301 aa8.23□□□□□ -1.09
TRIM55-204ENST00000353317 TBC1D3LB9A6J9 549 aa8.23□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms