RNA–Protein interactions for RNA: ENST00000335508.10

SF3B1-201, Transcript of splicing factor 3b subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B1, Length 6,526 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-201ENST00000335508 RFKQ969G6 155 aa6.58□□□□□ -1.36
SF3B1-201ENST00000335508 TRAPPC9Q96Q05 1148 aa6.58□□□□□ -1.36
SF3B1-201ENST00000335508 CIB1Q99828 191 aa6.58□□□□□ -1.36
SF3B1-201ENST00000335508 PTGES2Q9H7Z7 377 aa6.58□□□□□ -1.36
SF3B1-201ENST00000335508 QSER1Q2KHR3 1735 aa6.58□□□□□ -1.36
SF3B1-201ENST00000335508 OTOGLQ3ZCN5 2332 aa6.58□□□□□ -1.36
SF3B1-201ENST00000335508 TSPAN11A1L157 253 aa6.58□□□□□ -1.36
SF3B1-201ENST00000335508 BLACEA4D250 179 aa6.58□□□□□ -1.36
SF3B1-201ENST00000335508 OR52A4PA6NMU1 304 aa6.58□□□□□ -1.36
SF3B1-201ENST00000335508 ARPC2O15144 300 aa6.58□□□□□ -1.36
SF3B1-201ENST00000335508 C1SP09871 688 aa6.58□□□□□ -1.36
SF3B1-201ENST00000335508 NAT1P18440 290 aa6.58□□□□□ -1.36
SF3B1-201ENST00000335508 RPL4P36578 427 aaKnown RBP6.58□□□□□ -1.36
SF3B1-201ENST00000335508 UFM1P61960 85 aa6.58□□□□□ -1.36
SF3B1-201ENST00000335508 SNTA1Q13424 505 aa6.58□□□□□ -1.36
SF3B1-201ENST00000335508 KRR1Q13601 381 aaKnown RBP6.58□□□□□ -1.36
SF3B1-201ENST00000335508 IRF4Q15306 451 aa6.58□□□□□ -1.36
SF3B1-201ENST00000335508 MLIPQ5VWP3 458 aa6.58□□□□□ -1.36
SF3B1-201ENST00000335508 ERMP1Q7Z2K6 904 aa6.58□□□□□ -1.36
SF3B1-201ENST00000335508 TMEM156Q8N614 296 aa6.58□□□□□ -1.36
SF3B1-201ENST00000335508 OR2L8Q8NGY9 312 aa6.58□□□□□ -1.36
SF3B1-201ENST00000335508 F2RL3Q96RI0 385 aa6.58□□□□□ -1.36
SF3B1-201ENST00000335508 GAL3ST4Q96RP7 486 aa6.58□□□□□ -1.36
SF3B1-201ENST00000335508 DEFB126Q9BYW3 111 aa6.58□□□□□ -1.36
SF3B1-201ENST00000335508 ZDHHC5Q9C0B5 715 aa6.58□□□□□ -1.36
SF3B1-201ENST00000335508 SPIN1Q9Y657 262 aaPredicted RBP6.58□□□□□ -1.36
SF3B1-201ENST00000335508 CCDC163A0A0D9SF12 145 aa6.58□□□□□ -1.36
SF3B1-201ENST00000335508 A0A1W2PPC4 97 aa6.58□□□□□ -1.36
SF3B1-201ENST00000335508 LRRC14BA6NHZ5 514 aa6.58□□□□□ -1.36
SF3B1-201ENST00000335508 ENGP17813 658 aa6.58□□□□□ -1.36
SF3B1-201ENST00000335508 IMPA1P29218 277 aa6.58□□□□□ -1.36
SF3B1-201ENST00000335508 CLCN2P51788 898 aa6.58□□□□□ -1.36
SF3B1-201ENST00000335508 ARFIP1P53367 373 aa6.58□□□□□ -1.36
SF3B1-201ENST00000335508 RABL3Q5HYI8 236 aa6.58□□□□□ -1.36
SF3B1-201ENST00000335508 TOR1AIP1Q5JTV8 583 aa6.58□□□□□ -1.36
SF3B1-201ENST00000335508 DEF8Q6ZN54 512 aa6.58□□□□□ -1.36
SF3B1-201ENST00000335508 SLCO4C1Q6ZQN7 724 aa6.58□□□□□ -1.36
SF3B1-201ENST00000335508 POMGNT2Q8NAT1 580 aa6.58□□□□□ -1.36
SF3B1-201ENST00000335508 OR5AR1Q8NGP9 310 aa6.58□□□□□ -1.36
SF3B1-201ENST00000335508 OR5K2Q8NHB8 316 aa6.58□□□□□ -1.36
SF3B1-201ENST00000335508 MZB1Q8WU39 189 aa6.58□□□□□ -1.36
SF3B1-201ENST00000335508 TMEM234Q8WY98 164 aa6.58□□□□□ -1.36
SF3B1-201ENST00000335508 LINC00615Q96LM1 132 aaPredicted RBP6.58□□□□□ -1.36
SF3B1-201ENST00000335508 COQ10AQ96MF6 247 aa6.58□□□□□ -1.36
SF3B1-201ENST00000335508 KIR3DX1Q9H7L2 352 aa6.58□□□□□ -1.36
SF3B1-201ENST00000335508 TBC1D17Q9HA65 648 aa6.58□□□□□ -1.36
SF3B1-201ENST00000335508 LTB4R2Q9NPC1 389 aa6.58□□□□□ -1.36
SF3B1-201ENST00000335508 SLC35C2Q9NQQ7 365 aa6.58□□□□□ -1.36
SF3B1-201ENST00000335508 PRTFDC1Q9NRG1 225 aa6.58□□□□□ -1.36
SF3B1-201ENST00000335508 BTNL2Q9UIR0 455 aa6.58□□□□□ -1.36
SF3B1-201ENST00000335508 IKZF3Q9UKT9 509 aa6.58□□□□□ -1.36
SF3B1-201ENST00000335508 RAB26Q9ULW5 256 aa6.58□□□□□ -1.36
SF3B1-201ENST00000335508 CLEC4EQ9ULY5 219 aa6.58□□□□□ -1.36
SF3B1-201ENST00000335508 ACTL7AQ9Y615 435 aa6.58□□□□□ -1.36
SF3B1-201ENST00000335508 IGLV3-16A0A075B6K0 115 aa6.58□□□□□ -1.36
SF3B1-201ENST00000335508 OR6C74A6NCV1 312 aa6.58□□□□□ -1.36
SF3B1-201ENST00000335508 H0YJX3 145 aa6.58□□□□□ -1.36
SF3B1-201ENST00000335508 NME6O75414 186 aaPredicted RBP6.58□□□□□ -1.36
SF3B1-201ENST00000335508 SAGP10523 405 aaPredicted RBP6.58□□□□□ -1.36
SF3B1-201ENST00000335508 PORP16435 677 aaPredicted RBP6.58□□□□□ -1.36
SF3B1-201ENST00000335508 TALDO1P37837 337 aa6.58□□□□□ -1.36
SF3B1-201ENST00000335508 CASRP41180 1078 aa6.58□□□□□ -1.36
SF3B1-201ENST00000335508 SPIBQ01892 262 aa6.58□□□□□ -1.36
SF3B1-201ENST00000335508 MFSD13AQ14CX5 517 aa6.58□□□□□ -1.36
SF3B1-201ENST00000335508 ZSWIM9Q86XI8 627 aa6.58□□□□□ -1.36
SF3B1-201ENST00000335508 GATAD2AQ86YP4 633 aa6.58□□□□□ -1.36
SF3B1-201ENST00000335508 SPPL2CQ8IUH8 684 aa6.58□□□□□ -1.36
SF3B1-201ENST00000335508 PRSS58Q8IYP2 241 aa6.58□□□□□ -1.36
SF3B1-201ENST00000335508 OR5K1Q8NHB7 308 aa6.58□□□□□ -1.36
SF3B1-201ENST00000335508 PMM1Q92871 262 aa6.58□□□□□ -1.36
SF3B1-201ENST00000335508 GPATCH1Q9BRR8 931 aaKnown RBP6.58□□□□□ -1.36
SF3B1-201ENST00000335508 ADI1Q9BV57 179 aa6.58□□□□□ -1.36
SF3B1-201ENST00000335508 MKRN2Q9H000 416 aaKnown RBP6.58□□□□□ -1.36
SF3B1-201ENST00000335508 ACSS2Q9NR19 701 aa6.58□□□□□ -1.36
SF3B1-201ENST00000335508 SERINC1Q9NRX5 453 aa6.58□□□□□ -1.36
SF3B1-201ENST00000335508 GEMIN8Q9NWZ8 242 aaKnown RBP6.58□□□□□ -1.36
SF3B1-201ENST00000335508 EMCNQ9ULC0 261 aa6.58□□□□□ -1.36
SF3B1-201ENST00000335508 ERVK-11Q9UQG0 969 aa6.58□□□□□ -1.36
SF3B1-201ENST00000335508 A0A0J9YY10 115 aa6.58□□□□□ -1.36
SF3B1-201ENST00000335508 PRSS38A1L453 326 aa6.58□□□□□ -1.36
SF3B1-201ENST00000335508 TARM1B6A8C7 271 aa6.58□□□□□ -1.36
SF3B1-201ENST00000335508 GFYI3L273 518 aa6.58□□□□□ -1.36
SF3B1-201ENST00000335508 KHNYNO15037 678 aaKnown RBP6.58□□□□□ -1.36
SF3B1-201ENST00000335508 AQP9O43315 295 aa6.58□□□□□ -1.36
SF3B1-201ENST00000335508 EEDO75530 441 aaKnown RBP6.58□□□□□ -1.36
SF3B1-201ENST00000335508 RCBTB2O95199 551 aa6.58□□□□□ -1.36
SF3B1-201ENST00000335508 CER1O95813 267 aa6.58□□□□□ -1.36
SF3B1-201ENST00000335508 ALPPP05187 535 aa6.58□□□□□ -1.36
SF3B1-201ENST00000335508 UBTFL6P0CB48 400 aaPredicted RBP6.58□□□□□ -1.36
SF3B1-201ENST00000335508 UQCRC2P22695 453 aa6.58□□□□□ -1.36
SF3B1-201ENST00000335508 PBX2P40425 430 aa6.58□□□□□ -1.36
SF3B1-201ENST00000335508 GPLD1P80108 840 aa6.58□□□□□ -1.36
SF3B1-201ENST00000335508 TMEM150AQ86TG1 271 aa6.58□□□□□ -1.36
SF3B1-201ENST00000335508 FAM129BQ96TA1 746 aa6.58□□□□□ -1.36
SF3B1-201ENST00000335508 OR8D2Q9GZM6 311 aa6.58□□□□□ -1.36
SF3B1-201ENST00000335508 RPF2Q9H7B2 306 aaKnown RBP6.58□□□□□ -1.36
SF3B1-201ENST00000335508 MKKSQ9NPJ1 570 aaPredicted RBP6.58□□□□□ -1.36
SF3B1-201ENST00000335508 SLC6A14Q9UN76 642 aa6.58□□□□□ -1.36
SF3B1-201ENST00000335508 HMX2A2RU54 273 aa6.57□□□□□ -1.36
SF3B1-201ENST00000335508 CREG1O75629 220 aa6.57□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms