RNA–Protein interactions for RNA: ENST00000316433.8

ZNF540-201, Transcript of zinc finger protein 540, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene ZNF540, Length 3,099 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-201ENST00000316433 DERL2Q9GZP9 239 aa6.39□□□□□ -1.39
ZNF540-201ENST00000316433 IL1RL2Q9HB29 575 aa6.39□□□□□ -1.39
ZNF540-201ENST00000316433 SEBOXQ9HB31 216 aaPredicted RBP6.39□□□□□ -1.39
ZNF540-201ENST00000316433 ZNF334Q9HCZ1 680 aaPredicted RBP6.39□□□□□ -1.39
ZNF540-201ENST00000316433 ACSS2Q9NR19 701 aa6.39□□□□□ -1.39
ZNF540-201ENST00000316433 HCN3Q9P1Z3 774 aa6.39□□□□□ -1.39
ZNF540-201ENST00000316433 CPA4Q9UI42 421 aa6.39□□□□□ -1.39
ZNF540-201ENST00000316433 C3orf18Q9UK00 162 aa6.39□□□□□ -1.39
ZNF540-201ENST00000316433 RUVBL2Q9Y230 463 aaKnown RBP6.39□□□□□ -1.39
ZNF540-201ENST00000316433 PADI2Q9Y2J8 665 aa6.39□□□□□ -1.39
ZNF540-201ENST00000316433 H3BM21 787 aa6.39□□□□□ -1.39
ZNF540-201ENST00000316433 UBDO15205 165 aa6.39□□□□□ -1.39
ZNF540-201ENST00000316433 GSTA4O15217 222 aa6.39□□□□□ -1.39
ZNF540-201ENST00000316433 GADD45GO95257 159 aa6.39□□□□□ -1.39
ZNF540-201ENST00000316433 C9P02748 559 aa6.39□□□□□ -1.39
ZNF540-201ENST00000316433 LCP1P13796 627 aa6.39□□□□□ -1.39
ZNF540-201ENST00000316433 NCK1P16333 377 aa6.39□□□□□ -1.39
ZNF540-201ENST00000316433 PAICSP22234 425 aaKnown RBP6.39□□□□□ -1.39
ZNF540-201ENST00000316433 ATP5A1P25705 553 aaKnown RBP6.39□□□□□ -1.39
ZNF540-201ENST00000316433 G0S2P27469 103 aa6.39□□□□□ -1.39
ZNF540-201ENST00000316433 MAPK1P28482 360 aa6.39□□□□□ -1.39
ZNF540-201ENST00000316433 TGM4P49221 684 aa6.39□□□□□ -1.39
ZNF540-201ENST00000316433 SMSP52788 366 aa6.39□□□□□ -1.39
ZNF540-201ENST00000316433 DEFA5Q01523 94 aa6.39□□□□□ -1.39
ZNF540-201ENST00000316433 YWHAHQ04917 246 aaPredicted RBP6.39□□□□□ -1.39
ZNF540-201ENST00000316433 RAPSNQ13702 412 aa6.39□□□□□ -1.39
ZNF540-201ENST00000316433 GRM3Q14832 879 aa6.39□□□□□ -1.39
ZNF540-201ENST00000316433 IRF4Q15306 451 aa6.39□□□□□ -1.39
ZNF540-201ENST00000316433 RBMS2Q15434 407 aaKnown RBP6.39□□□□□ -1.39
ZNF540-201ENST00000316433 MAPKAPK3Q16644 382 aa6.39□□□□□ -1.39
ZNF540-201ENST00000316433 RNF212Q495C1 297 aa6.39□□□□□ -1.39
ZNF540-201ENST00000316433 PRSS36Q5K4E3 855 aa6.39□□□□□ -1.39
ZNF540-201ENST00000316433 ACER2Q5QJU3 275 aa6.39□□□□□ -1.39
ZNF540-201ENST00000316433 FAM171A1Q5VUB5 890 aa6.39□□□□□ -1.39
ZNF540-201ENST00000316433 LRRC66Q68CR7 880 aa6.39□□□□□ -1.39
ZNF540-201ENST00000316433 C16orf54Q6UWD8 224 aa6.39□□□□□ -1.39
ZNF540-201ENST00000316433 NLRC3Q7RTR2 1065 aa6.39□□□□□ -1.39
ZNF540-201ENST00000316433 HSD17B13Q7Z5P4 300 aaPredicted RBP6.39□□□□□ -1.39
ZNF540-201ENST00000316433 GLCCI1Q86VQ1 547 aa6.39□□□□□ -1.39
ZNF540-201ENST00000316433 NPAS4Q8IUM7 802 aa6.39□□□□□ -1.39
ZNF540-201ENST00000316433 KLHDC8AQ8IYD2 350 aa6.39□□□□□ -1.39
ZNF540-201ENST00000316433 CPXCR1Q8N123 301 aa6.39□□□□□ -1.39
ZNF540-201ENST00000316433 FAM181AQ8N9Y4 354 aa6.39□□□□□ -1.39
ZNF540-201ENST00000316433 DUSP18Q8NEJ0 188 aa6.39□□□□□ -1.39
ZNF540-201ENST00000316433 DMBX1Q8NFW5 382 aa6.39□□□□□ -1.39
ZNF540-201ENST00000316433 CREB3L4Q8TEY5 395 aa6.39□□□□□ -1.39
ZNF540-201ENST00000316433 IMP4Q96G21 291 aaKnown RBP6.39□□□□□ -1.39
ZNF540-201ENST00000316433 SENP8Q96LD8 212 aa6.39□□□□□ -1.39
ZNF540-201ENST00000316433 COQ10AQ96MF6 247 aa6.39□□□□□ -1.39
ZNF540-201ENST00000316433 RBM4BQ9BQ04 359 aaKnown RBP6.39□□□□□ -1.39
ZNF540-201ENST00000316433 TMEM175Q9BSA9 504 aa6.39□□□□□ -1.39
ZNF540-201ENST00000316433 RBM4Q9BWF3 364 aaKnown RBP6.39□□□□□ -1.39
ZNF540-201ENST00000316433 GSDMCQ9BYG8 508 aa6.39□□□□□ -1.39
ZNF540-201ENST00000316433 SEMA4CQ9C0C4 833 aa6.39□□□□□ -1.39
ZNF540-201ENST00000316433 POLR1EQ9GZS1 481 aaKnown RBP6.39□□□□□ -1.39
ZNF540-201ENST00000316433 OR51E2Q9H255 320 aa6.39□□□□□ -1.39
ZNF540-201ENST00000316433 EMC7Q9NPA0 242 aa6.39□□□□□ -1.39
ZNF540-201ENST00000316433 C14orf105Q9NVL8 296 aa6.39□□□□□ -1.39
ZNF540-201ENST00000316433 AIG1Q9NVV5 245 aa6.39□□□□□ -1.39
ZNF540-201ENST00000316433 SMPD4Q9NXE4 827 aa6.39□□□□□ -1.39
ZNF540-201ENST00000316433 TREM2Q9NZC2 230 aa6.39□□□□□ -1.39
ZNF540-201ENST00000316433 SLC17A6Q9P2U8 582 aa6.39□□□□□ -1.39
ZNF540-201ENST00000316433 CRYL1Q9Y2S2 319 aa6.39□□□□□ -1.39
ZNF540-201ENST00000316433 PCDHB14Q9Y5E9 798 aa6.39□□□□□ -1.39
ZNF540-201ENST00000316433 PCDHGC4Q9Y5F7 938 aa6.39□□□□□ -1.39
ZNF540-201ENST00000316433 PCDHGB7Q9Y5F8 929 aa6.39□□□□□ -1.39
ZNF540-201ENST00000316433 PCDHGA6Q9Y5G7 932 aa6.39□□□□□ -1.39
ZNF540-201ENST00000316433 PCDHGA5Q9Y5G8 931 aa6.39□□□□□ -1.39
ZNF540-201ENST00000316433 PCDHGA1Q9Y5H4 931 aa6.39□□□□□ -1.39
ZNF540-201ENST00000316433 GPR45Q9Y5Y3 372 aa6.39□□□□□ -1.39
ZNF540-201ENST00000316433 CASP8AP2Q9UKL3 1982 aa6.39□□□□□ -1.39
ZNF540-201ENST00000316433 KIF26AQ9ULI4 1882 aaPredicted RBP6.39□□□□□ -1.39
ZNF540-201ENST00000316433 SLC35F4A4IF30 521 aa6.39□□□□□ -1.39
ZNF540-201ENST00000316433 A8MT66 165 aa6.39□□□□□ -1.39
ZNF540-201ENST00000316433 TMEM189-UBE2V1I3L0A0 370 aa6.39□□□□□ -1.39
ZNF540-201ENST00000316433 M0R233 179 aa6.39□□□□□ -1.39
ZNF540-201ENST00000316433 KIAA0355O15063 1070 aa6.39□□□□□ -1.39
ZNF540-201ENST00000316433 CHP2O43745 196 aa6.39□□□□□ -1.39
ZNF540-201ENST00000316433 FAM20BO75063 409 aa6.39□□□□□ -1.39
ZNF540-201ENST00000316433 BEST1O76090 585 aa6.39□□□□□ -1.39
ZNF540-201ENST00000316433 LPLP06858 475 aa6.39□□□□□ -1.39
ZNF540-201ENST00000316433 RD3LP0DJH9 198 aa6.39□□□□□ -1.39
ZNF540-201ENST00000316433 MUC1P15941 1255 aaPredicted RBP6.39□□□□□ -1.39
ZNF540-201ENST00000316433 DDX6P26196 483 aaKnown RBP eCLIP6.39□□□□□ -1.39
ZNF540-201ENST00000316433 SLC1A3P43003 542 aa6.39□□□□□ -1.39
ZNF540-201ENST00000316433 MAGEA2P43356 314 aa6.39□□□□□ -1.39
ZNF540-201ENST00000316433 SULT1E1P49888 294 aa6.39□□□□□ -1.39
ZNF540-201ENST00000316433 AP1S1P61966 158 aa6.39□□□□□ -1.39
ZNF540-201ENST00000316433 UBXN11Q5T124 520 aa6.39□□□□□ -1.39
ZNF540-201ENST00000316433 LCN1P1Q5VSP4 162 aa6.39□□□□□ -1.39
ZNF540-201ENST00000316433 LAIR1Q6GTX8 287 aa6.39□□□□□ -1.39
ZNF540-201ENST00000316433 EIF3MQ7L2H7 374 aaKnown RBP6.39□□□□□ -1.39
ZNF540-201ENST00000316433 KIAA0907Q7Z7F0 614 aaPredicted RBP6.39□□□□□ -1.39
ZNF540-201ENST00000316433 IFNEQ86WN2 208 aa6.39□□□□□ -1.39
ZNF540-201ENST00000316433 FUNDC1Q8IVP5 155 aa6.39□□□□□ -1.39
ZNF540-201ENST00000316433 C1orf52Q8N6N3 182 aaKnown RBP6.39□□□□□ -1.39
ZNF540-201ENST00000316433 NANOGP1Q8N7R0 232 aa6.39□□□□□ -1.39
ZNF540-201ENST00000316433 CAMKVQ8NCB2 501 aa6.39□□□□□ -1.39
ZNF540-201ENST00000316433 B3GALNT2Q8NCR0 500 aa6.39□□□□□ -1.39
ZNF540-201ENST00000316433 TMIEQ8NEW7 156 aa6.39□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 56 ms